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PI0028900 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028900
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr05:9282108..9282737
RNA-Seq ExpressionPI0028900
SyntenyPI0028900
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051365.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-0848.57Show/hide
Query:  MRGPSYSGFGWNEEYQCIIVERELFDSWVKDF-----YTNHFHIMTICRMCSTEIGQQEHMQRPLLTWDL
        M GP+ SGFGWN+E +CII E+ELF++WV+ +       N+F I T   MCS  IGQQ    R   TW L
Subjt:  MRGPSYSGFGWNEEYQCIIVERELFDSWVKDF-----YTNHFHIMTICRMCSTEIGQQEHMQRPLLTWDL

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]2.8e-0931.45Show/hide
Query:  MRGPSYSGFGWNEEYQCIIVERELFDSWVKD-------------FYTNHFHIMTICRMCS--------------------------------TEIGQQEH
        MRGPS SGFGWNEE+QCII ER+LFDSWVK              +Y +  ++    R                                   T   Q  H
Subjt:  MRGPSYSGFGWNEEYQCIIVERELFDSWVKD-------------FYTNHFHIMTICRMCS--------------------------------TEIGQQEH

Query:  MQRPLLTWDLMCQTVLMTVDQVKDEIVQVGVRGNGKRATKVELRAEVVKQLQGIPELRS
        +  P   + +  + +   ++   +++  +      KRA ++E+RA+VVKQLQ IPELRS
Subjt:  MQRPLLTWDLMCQTVLMTVDQVKDEIVQVGVRGNGKRATKVELRAEVVKQLQGIPELRS

KGN66636.1 hypothetical protein Csa_007482 [Cucumis sativus]8.8e-2759.52Show/hide
Query:  MRGPSYSGFGWNEEYQCIIVERELFDSWVKDFYTNHFHIMTICRMCSTEIGQQEHMQRPLLTWDLMCQTVLMT----VDQVKDEIVQVGVRGN-------
        MRGPS S FGWNEEYQCI+ E+ELFDSWVKD             M S +IG QEH QR LL W  MCQT+LMT    VDQVK+EIV V V+GN       
Subjt:  MRGPSYSGFGWNEEYQCIIVERELFDSWVKDFYTNHFHIMTICRMCSTEIGQQEHMQRPLLTWDLMCQTVLMT----VDQVKDEIVQVGVRGN-------

Query:  -GKRATKVELRAEVVKQLQGIPELRS
          +RATKVEL  EVVKQLQ IPEL++
Subjt:  -GKRATKVELRAEVVKQLQGIPELRS

TYK05827.1 retrotransposon protein [Cucumis melo var. makuwa]2.9e-0645.07Show/hide
Query:  MRGPSYSGFGWNEEYQCIIVERELFDSWVKDF------YTNHFHIMTICRMCSTEIGQQEHMQRPLLTWDL
        MRG + SGFGWN++ +CIIVE+EL DSWV+         TN F I T   +CS  I ++    R   TW L
Subjt:  MRGPSYSGFGWNEEYQCIIVERELFDSWVKDF------YTNHFHIMTICRMCSTEIGQQEHMQRPLLTWDL

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.0e-0683.33Show/hide
Query:  MRGPSYSGFGWNEEYQCIIVERELFDSWVK
        MRGPS SGFGWNEE+QCII ER+LFDSW+K
Subjt:  MRGPSYSGFGWNEEYQCIIVERELFDSWVK

TrEMBL top hitse value%identityAlignment
A0A0A0M343 Uncharacterized protein4.3e-2759.52Show/hide
Query:  MRGPSYSGFGWNEEYQCIIVERELFDSWVKDFYTNHFHIMTICRMCSTEIGQQEHMQRPLLTWDLMCQTVLMT----VDQVKDEIVQVGVRGN-------
        MRGPS S FGWNEEYQCI+ E+ELFDSWVKD             M S +IG QEH QR LL W  MCQT+LMT    VDQVK+EIV V V+GN       
Subjt:  MRGPSYSGFGWNEEYQCIIVERELFDSWVKDFYTNHFHIMTICRMCSTEIGQQEHMQRPLLTWDLMCQTVLMT----VDQVKDEIVQVGVRGN-------

Query:  -GKRATKVELRAEVVKQLQGIPELRS
          +RATKVEL  EVVKQLQ IPEL++
Subjt:  -GKRATKVELRAEVVKQLQGIPELRS

A0A1S3B4L3 uncharacterized protein LOC1034859534.9e-0783.33Show/hide
Query:  MRGPSYSGFGWNEEYQCIIVERELFDSWVK
        MRGPS SGFGWNEE+QCII ER+LFDSW+K
Subjt:  MRGPSYSGFGWNEEYQCIIVERELFDSWVK

A0A5A7U0H7 Retrotransposon protein4.9e-0783.33Show/hide
Query:  MRGPSYSGFGWNEEYQCIIVERELFDSWVK
        MRGPS SGFGWNEE+QCII ER+LFDSW+K
Subjt:  MRGPSYSGFGWNEEYQCIIVERELFDSWVK

A0A5A7UCJ1 Retrotransposon protein5.2e-0948.57Show/hide
Query:  MRGPSYSGFGWNEEYQCIIVERELFDSWVKDF-----YTNHFHIMTICRMCSTEIGQQEHMQRPLLTWDL
        M GP+ SGFGWN+E +CII E+ELF++WV+ +       N+F I T   MCS  IGQQ    R   TW L
Subjt:  MRGPSYSGFGWNEEYQCIIVERELFDSWVKDF-----YTNHFHIMTICRMCSTEIGQQEHMQRPLLTWDL

A0A5D3DG22 Retrotransposon protein1.4e-0931.45Show/hide
Query:  MRGPSYSGFGWNEEYQCIIVERELFDSWVKD-------------FYTNHFHIMTICRMCS--------------------------------TEIGQQEH
        MRGPS SGFGWNEE+QCII ER+LFDSWVK              +Y +  ++    R                                   T   Q  H
Subjt:  MRGPSYSGFGWNEEYQCIIVERELFDSWVKD-------------FYTNHFHIMTICRMCS--------------------------------TEIGQQEH

Query:  MQRPLLTWDLMCQTVLMTVDQVKDEIVQVGVRGNGKRATKVELRAEVVKQLQGIPELRS
        +  P   + +  + +   ++   +++  +      KRA ++E+RA+VVKQLQ IPELRS
Subjt:  MQRPLLTWDLMCQTVLMTVDQVKDEIVQVGVRGNGKRATKVELRAEVVKQLQGIPELRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGGCCATCCTATAGTGGGTTTGGATGGAATGAAGAATATCAATGCATCATCGTAGAACGGGAGTTGTTTGATAGTTGGGTCAAGGACTTTTACACAAATCATTT
CCATATTATGACGATCTGTCGTATGTGTTCGACAGAGATCGGGCAACAGGAGCATATGCAGAGACCTTTACTGACGTGGGATCTAATGTGCCAAACAGTTTTAATGACGG
TCGATCAAGTGAAGGATGAAATTGTTCAAGTGGGAGTAAGAGGAAACGGGAAGCGTGCAACAAAGGTCGAATTGCGTGCTGAAGTCGTGAAACAACTGCAAGGTATCCCA
GAACTACGGAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGGCCATCCTATAGTGGGTTTGGATGGAATGAAGAATATCAATGCATCATCGTAGAACGGGAGTTGTTTGATAGTTGGGTCAAGGACTTTTACACAAATCATTT
CCATATTATGACGATCTGTCGTATGTGTTCGACAGAGATCGGGCAACAGGAGCATATGCAGAGACCTTTACTGACGTGGGATCTAATGTGCCAAACAGTTTTAATGACGG
TCGATCAAGTGAAGGATGAAATTGTTCAAGTGGGAGTAAGAGGAAACGGGAAGCGTGCAACAAAGGTCGAATTGCGTGCTGAAGTCGTGAAACAACTGCAAGGTATCCCA
GAACTACGGAGCTGA
Protein sequenceShow/hide protein sequence
MRGPSYSGFGWNEEYQCIIVERELFDSWVKDFYTNHFHIMTICRMCSTEIGQQEHMQRPLLTWDLMCQTVLMTVDQVKDEIVQVGVRGNGKRATKVELRAEVVKQLQGIP
ELRS