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PI0028936 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028936
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr12:16166890..16167598
RNA-Seq ExpressionPI0028936
SyntenyPI0028936
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-1839.31Show/hide
Query:  MRGPSCSGFGWNEEYQCIIAERDLFDSWVK----------------------IGQQEHVRRPLLTW--------DLMCQTI---------LMTVFHLMIY
        MRGPSCSGFGWNEE+QCIIAERDLFDSWVK                       G+         T+        ++   TI         + T++   ++
Subjt:  MRGPSCSGFGWNEEYQCIIAERDLFDSWVK----------------------IGQQEHVRRPLLTW--------DLMCQTI---------LMTVFHLMIY

Query:  -----MMKTSRRLKDEIVQVGVRGNGAIVDWPKEKRATEVELRAEVVKQLDGILELWSRDRVKLMQILFRSID
             M      +   +++ G     AI DW KEKRA E+E+RA+VVKQL  I EL S+ R KLMQILFRS++
Subjt:  -----MMKTSRRLKDEIVQVGVRGNGAIVDWPKEKRATEVELRAEVVKQLDGILELWSRDRVKLMQILFRSID

KGN66636.1 hypothetical protein Csa_007482 [Cucumis sativus]1.3e-3262.79Show/hide
Query:  MRGPSCSGFGWNEEYQCIIAERDLFDSWV--------KIGQQEHVRRPLLTWDLMCQTILMTVFHLMIYMMKTSRRLKDEIVQVGVRGNGAIVDWPKEKR
        MRGPSCS FGWNEEYQCI+ E++LFDSWV        KIG QEH +R LL W  MCQTILMTVF L+        ++K+EIV V V+GN AIV WPKE+R
Subjt:  MRGPSCSGFGWNEEYQCIIAERDLFDSWV--------KIGQQEHVRRPLLTWDLMCQTILMTVFHLMIYMMKTSRRLKDEIVQVGVRGNGAIVDWPKEKR

Query:  ATEVELRAEVVKQLDGILELWSRDRVKLM
        AT+VEL  EVVKQL  I EL +R RVKLM
Subjt:  ATEVELRAEVVKQLDGILELWSRDRVKLM

TYK07962.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-1539.22Show/hide
Query:  MRGPSCSGFGWNEEYQCIIAERDLFDSWVKIGQQEHVRRPLLTWDLM------------CQTILMTVFHLMIYMMKTSRRLKDE-------IVQVGVRGN
        MR  S   FGWNEE+QCI+A+ + FDSW     +  + +    +D +            C      V   M+ M      L D        +   GV  +
Subjt:  MRGPSCSGFGWNEEYQCIIAERDLFDSWVKIGQQEHVRRPLLTWDLM------------CQTILMTVFHLMIYMMKTSRRLKDE-------IVQVGVRGN

Query:  -----GAIVDWPKEKRATEVELRAEVVKQLDGILELWSRDRVKLMQILFRSID
             G   DWPKEK ATEVEL A+VVKQL GI EL S+DR KL+QILFRS++
Subjt:  -----GAIVDWPKEKRATEVELRAEVVKQLDGILELWSRDRVKLMQILFRSID

TYK19779.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-1246.15Show/hide
Query:  MRGPSCSGFGWNEEYQCIIAERDLFDSWVKIGQQE----HVRRP-------LLTWDLMCQTILMT---VFHLMIYMMKTSRRLKDEIVQ--VGVRGNGAI
        +RGPSCSGFGWNE++QCIIAERDLFD+WVK         H   P       +   D   +  L T   V   ++ M      L D   Q    +   GAI
Subjt:  MRGPSCSGFGWNEEYQCIIAERDLFDSWVKIGQQE----HVRRP-------LLTWDLMCQTILMT---VFHLMIYMMKTSRRLKDEIVQ--VGVRGNGAI

Query:  VDWPKEKRATEVELRAE
         DWPKEKRATEVELR E
Subjt:  VDWPKEKRATEVELRAE

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]9.1e-1835.86Show/hide
Query:  MRGPSCSGFGWNEEYQCIIAERDLFDSWVK----------------------IGQQEHVRRPLLTW--------DLMCQTI---------LMTVFHLMIY
        MRGPSCSGFGWNEE+QCIIAERDLFDSW+K                       G+         T+        ++   TI         + T++   ++
Subjt:  MRGPSCSGFGWNEEYQCIIAERDLFDSWVK----------------------IGQQEHVRRPLLTW--------DLMCQTI---------LMTVFHLMIY

Query:  M-------------------MKTSRRLKD-----------EIVQVGVRGNGAIVDWPKEKRATEVELRAEVVKQLDGILELWSRDRVKLMQILFRSID
        M                      S+R +             +++ G     AI DWPKEKRA EVE+RA+VVKQL  I +L S+DR KLMQILFRS++
Subjt:  M-------------------MKTSRRLKD-----------EIVQVGVRGNGAIVDWPKEKRATEVELRAEVVKQLDGILELWSRDRVKLMQILFRSID

TrEMBL top hitse value%identityAlignment
A0A0A0M343 Uncharacterized protein6.4e-3362.79Show/hide
Query:  MRGPSCSGFGWNEEYQCIIAERDLFDSWV--------KIGQQEHVRRPLLTWDLMCQTILMTVFHLMIYMMKTSRRLKDEIVQVGVRGNGAIVDWPKEKR
        MRGPSCS FGWNEEYQCI+ E++LFDSWV        KIG QEH +R LL W  MCQTILMTVF L+        ++K+EIV V V+GN AIV WPKE+R
Subjt:  MRGPSCSGFGWNEEYQCIIAERDLFDSWV--------KIGQQEHVRRPLLTWDLMCQTILMTVFHLMIYMMKTSRRLKDEIVQVGVRGNGAIVDWPKEKR

Query:  ATEVELRAEVVKQLDGILELWSRDRVKLM
        AT+VEL  EVVKQL  I EL +R RVKLM
Subjt:  ATEVELRAEVVKQLDGILELWSRDRVKLM

A0A1S3B4L3 uncharacterized protein LOC1034859534.4e-1835.86Show/hide
Query:  MRGPSCSGFGWNEEYQCIIAERDLFDSWVK----------------------IGQQEHVRRPLLTW--------DLMCQTI---------LMTVFHLMIY
        MRGPSCSGFGWNEE+QCIIAERDLFDSW+K                       G+         T+        ++   TI         + T++   ++
Subjt:  MRGPSCSGFGWNEEYQCIIAERDLFDSWVK----------------------IGQQEHVRRPLLTW--------DLMCQTI---------LMTVFHLMIY

Query:  M-------------------MKTSRRLKD-----------EIVQVGVRGNGAIVDWPKEKRATEVELRAEVVKQLDGILELWSRDRVKLMQILFRSID
        M                      S+R +             +++ G     AI DWPKEKRA EVE+RA+VVKQL  I +L S+DR KLMQILFRS++
Subjt:  M-------------------MKTSRRLKD-----------EIVQVGVRGNGAIVDWPKEKRATEVELRAEVVKQLDGILELWSRDRVKLMQILFRSID

A0A5A7U0H7 Retrotransposon protein4.4e-1835.86Show/hide
Query:  MRGPSCSGFGWNEEYQCIIAERDLFDSWVK----------------------IGQQEHVRRPLLTW--------DLMCQTI---------LMTVFHLMIY
        MRGPSCSGFGWNEE+QCIIAERDLFDSW+K                       G+         T+        ++   TI         + T++   ++
Subjt:  MRGPSCSGFGWNEEYQCIIAERDLFDSWVK----------------------IGQQEHVRRPLLTW--------DLMCQTI---------LMTVFHLMIY

Query:  M-------------------MKTSRRLKD-----------EIVQVGVRGNGAIVDWPKEKRATEVELRAEVVKQLDGILELWSRDRVKLMQILFRSID
        M                      S+R +             +++ G     AI DWPKEKRA EVE+RA+VVKQL  I +L S+DR KLMQILFRS++
Subjt:  M-------------------MKTSRRLKD-----------EIVQVGVRGNGAIVDWPKEKRATEVELRAEVVKQLDGILELWSRDRVKLMQILFRSID

A0A5D3C9I2 Retrotransposon protein1.2e-1539.22Show/hide
Query:  MRGPSCSGFGWNEEYQCIIAERDLFDSWVKIGQQEHVRRPLLTWDLM------------CQTILMTVFHLMIYMMKTSRRLKDE-------IVQVGVRGN
        MR  S   FGWNEE+QCI+A+ + FDSW     +  + +    +D +            C      V   M+ M      L D        +   GV  +
Subjt:  MRGPSCSGFGWNEEYQCIIAERDLFDSWVKIGQQEHVRRPLLTWDLM------------CQTILMTVFHLMIYMMKTSRRLKDE-------IVQVGVRGN

Query:  -----GAIVDWPKEKRATEVELRAEVVKQLDGILELWSRDRVKLMQILFRSID
             G   DWPKEK ATEVEL A+VVKQL GI EL S+DR KL+QILFRS++
Subjt:  -----GAIVDWPKEKRATEVELRAEVVKQLDGILELWSRDRVKLMQILFRSID

A0A5D3DG22 Retrotransposon protein1.2e-1839.31Show/hide
Query:  MRGPSCSGFGWNEEYQCIIAERDLFDSWVK----------------------IGQQEHVRRPLLTW--------DLMCQTI---------LMTVFHLMIY
        MRGPSCSGFGWNEE+QCIIAERDLFDSWVK                       G+         T+        ++   TI         + T++   ++
Subjt:  MRGPSCSGFGWNEEYQCIIAERDLFDSWVK----------------------IGQQEHVRRPLLTW--------DLMCQTI---------LMTVFHLMIY

Query:  -----MMKTSRRLKDEIVQVGVRGNGAIVDWPKEKRATEVELRAEVVKQLDGILELWSRDRVKLMQILFRSID
             M      +   +++ G     AI DW KEKRA E+E+RA+VVKQL  I EL S+ R KLMQILFRS++
Subjt:  -----MMKTSRRLKDEIVQVGVRGNGAIVDWPKEKRATEVELRAEVVKQLDGILELWSRDRVKLMQILFRSID

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGGCCATCCTGTAGTGGGTTTGGGTGGAATGAAGAATATCAATGCATCATCGCAGAACGGGACTTGTTTGATAGTTGGGTGAAGATCGGGCAACAGGAGCACGT
GCGGAGACCTTTGCTGACGTGGGATCTAATGTGTCAAACAATTTTAATGACGGTGTTCCACTTGATGATCTACATGATGAAGACATCCCGACGATTGAAGGACGAAATTG
TTCAAGTGGGAGTAAGAGGAAACGGGGCAATTGTCGATTGGCCAAAAGAGAAGCGTGCAACAGAGGTCGAATTGCGTGCTGAAGTCGTGAAACAACTAGATGGTATCCTT
GAACTATGGAGCCGAGATAGGGTAAAGCTTATGCAAATATTATTCCGTAGTATTGATGACACATGGATTCCTGTCGGTCCCAACGAAACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGGCCATCCTGTAGTGGGTTTGGGTGGAATGAAGAATATCAATGCATCATCGCAGAACGGGACTTGTTTGATAGTTGGGTGAAGATCGGGCAACAGGAGCACGT
GCGGAGACCTTTGCTGACGTGGGATCTAATGTGTCAAACAATTTTAATGACGGTGTTCCACTTGATGATCTACATGATGAAGACATCCCGACGATTGAAGGACGAAATTG
TTCAAGTGGGAGTAAGAGGAAACGGGGCAATTGTCGATTGGCCAAAAGAGAAGCGTGCAACAGAGGTCGAATTGCGTGCTGAAGTCGTGAAACAACTAGATGGTATCCTT
GAACTATGGAGCCGAGATAGGGTAAAGCTTATGCAAATATTATTCCGTAGTATTGATGACACATGGATTCCTGTCGGTCCCAACGAAACTTAA
Protein sequenceShow/hide protein sequence
MRGPSCSGFGWNEEYQCIIAERDLFDSWVKIGQQEHVRRPLLTWDLMCQTILMTVFHLMIYMMKTSRRLKDEIVQVGVRGNGAIVDWPKEKRATEVELRAEVVKQLDGIL
ELWSRDRVKLMQILFRSIDDTWIPVGPNET