CuGenDBv2

Gene ID	PI0028964
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Conserved oligomeric Golgi complex subunit 6
Genome location	chr07:20013199..20013543
RNA-Seq Expression	PI0028964
Synteny	PI0028964
Gene Ontology terms	GO:0006810 - transport (biological process) GO:0005794 - Golgi apparatus (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8649614.1 hypothetical protein Csa_012223 [Cucumis sativus]

2.1e-19

57.39

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Query:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYDN-HGSKQQVPRPQVPCKAS
        MT F   S  G+C+G   +DRDSRH+SP SLSESLKAFFG VL             VPKLRTEAC+QVARS SEA +LIY+       + P P   CKAS
Subjt:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYDN-HGSKQQVPRPQVPCKAS

Query:  SKPDKNNFGNIIIEI
        SKPDK +FGNI IEI
Subjt:  SKPDKNNFGNIIIEI

KAG6608028.1 Conserved oligomeric Golgi complex subunit 6, partial [Cucurbita argyrosperma subsp. sororia]

4.6e-11

55.56

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Query:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD
        MTYFHKSS     +       D++H SPVSLSE+LKAFFG VL             VPKLR+EACIQVARS +E YELIY+
Subjt:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD

XP_004142643.1 conserved oligomeric Golgi complex subunit 6 [Cucumis sativus]

7.1e-12

56.79

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Query:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD
        MTYFHKSS+AG  +    +  + +  SP SLSESLKAFFG  L             VPKLR+EACIQVARS +EAYELIYD
Subjt:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD

XP_008444218.2 PREDICTED: conserved oligomeric Golgi complex subunit 6 [Cucumis melo]

3.5e-11

55.56

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Query:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD
        MTYFHKS +AG  +    +  + +  SP SLSESLKAFFG  L             VPKLR+EACIQVARS +EAYELIYD
Subjt:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD

XP_038899282.1 conserved oligomeric Golgi complex subunit 6 [Benincasa hispida]

2.4e-12

58.02

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Query:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD
        MTYFHKSS+AG  +    +  + +  SP SLSESLKAFFG VL             VPKLR+EACIQVARS +EAYELIYD
Subjt:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L1U3 Conserved oligomeric Golgi complex subunit 6

3.4e-12

56.79

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Query:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD
        MTYFHKSS+AG  +    +  + +  SP SLSESLKAFFG  L             VPKLR+EACIQVARS +EAYELIYD
Subjt:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD

A0A0A0L353 Conserved oligomeric Golgi complex subunit 6

1.1e-18

60.82

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Query:  IDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYDN-HGSKQQVPRPQVPCKASSKPDKNNFGNIIIEI
        +DRDSRH+SP SLSESLKAFFG VL             VPKLRTEAC+QVARS SEA +LIY+       + P P   CKASSKPDK +FGNI IEI
Subjt:  IDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYDN-HGSKQQVPRPQVPCKASSKPDKNNFGNIIIEI

A0A1S3BAN8 Conserved oligomeric Golgi complex subunit 6

1.7e-11

55.56

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Query:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD
        MTYFHKS +AG  +    +  + +  SP SLSESLKAFFG  L             VPKLR+EACIQVARS +EAYELIYD
Subjt:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD

A0A5A7UEV6 Conserved oligomeric Golgi complex subunit 6

1.7e-11

55.56

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Query:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD
        MTYFHKS +AG  +    +  + +  SP SLSESLKAFFG  L             VPKLR+EACIQVARS +EAYELIYD
Subjt:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD

A0A6J1IV23 Conserved oligomeric Golgi complex subunit 6

6.5e-11

54.32

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Query:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD
        MTYFHKSS     +       D++H SP SLSE+LKAFFG VL             VPKLR+EACIQVARS +E YELIY+
Subjt:  MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYD

SwissProt top hits

e value

%identity

Alignment

Q6NMI3 Conserved oligomeric Golgi complex subunit 6

3.2e-07

42.17

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Query:  DSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYDNHGSKQQVPRPQVPCKASSKPDK
        + +  SP  LSE LKAFFG VL             VPKLR+EAC++VA++ +EAYE+IY    + QQ   P     A   PD+
Subjt:  DSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYDNHGSKQQVPRPQVPCKASSKPDK

Arabidopsis top hits

e value

%identity

Alignment

AT1G31780.1 CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast hits to 379 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).

2.3e-08

42.17

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Query:  DSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYDNHGSKQQVPRPQVPCKASSKPDK
        + +  SP  LSE LKAFFG VL             VPKLR+EAC++VA++ +EAYE+IY    + QQ   P     A   PD+
Subjt:  DSRHVSPVSLSESLKAFFGFVL-------------VPKLRTEACIQVARSPSEAYELIYDNHGSKQQVPRPQVPCKASSKPDK

Sequences

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CDS sequence

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ATGACATATTTCCATAAAAGCTCACAAGCAGGCAAATGCAGCGGATGGACCACGATTGACCGAGATTCAAGACACGTCTCTCCCGTTTCACTTTCGGAGAGCTTGAAAGC
TTTCTTTGGGTTTGTTTTGGTTCCTAAATTGCGAACGGAAGCCTGTATTCAAGTGGCTCGATCACCGTCTGAAGCTTACGAACTTATATATGACAATCATGGATCCAAAC
AACAGGTACCCAGACCCCAAGTCCCTTGCAAGGCATCCTCCAAACCAGATAAGAACAATTTTGGGAATATAATTATAGAGATTTGA

mRNA sequence

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Protein sequence

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MTYFHKSSQAGKCSGWTTIDRDSRHVSPVSLSESLKAFFGFVLVPKLRTEACIQVARSPSEAYELIYDNHGSKQQVPRPQVPCKASSKPDKNNFGNIIIEI

PI0028964 (gene) of Melon (PI 482460) v1 genome