CuGenDBv2

Gene ID	PI0028976
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	DNA/RNA polymerases superfamily protein
Genome location	chr07:11328161..11331106
RNA-Seq Expression	PI0028976
Synteny	PI0028976
Gene Ontology terms	NA
InterPro domains	IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0031989.1 putative Retrotransposon protein [Cucumis melo var. makuwa]

2.1e-42

56.07

Show/hide

Query:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF
        ++FLTKYHA+ D SNKEVVLR+P K E+KF  DK++E   I+ VLKA KL+K  H +YLA +++T A RNDP  + IVCEY++V            EI+F
Subjt:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF

Query:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDYR
        TIE+V GTTPISQT YRM L ELKELK+QL+EL++  YI+P TSPW A       +LF +K+DGS+RLC DYR
Subjt:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDYR

KAA0041141.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

5.9e-37

55.23

Show/hide

Query:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF
        M+FLTKYHA+LDCSNKEVVLRE  KFEVK+                        HT YLA ++DTQ +++D  ++ IV EYL+V            EIE 
Subjt:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF

Query:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDY
        TI+V+  TTPISQT YRM  SELKELKDQLEELL+ GYI+PST PWG +P     +LFVKKKDGSMRLC DY
Subjt:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDY

KAA0041696.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

2.3e-36

54.34

Show/hide

Query:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF
        MDFL  ++A +DC  KEVV R+P   EV F   KK+   S++ VLKA KL++KG TT+LA IV  Q  +  P  + +V E+L+V            EIEF
Subjt:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF

Query:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDYR
        TIE++ GT PISQ LYRM  SELKELK QL+EL+D GYIRPS SPWGA       VLFVKKKDG++RLC DYR
Subjt:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDYR

TYK01558.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

1.5e-40

60.12

Show/hide

Query:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF
        M FLTKYHA  DCSN EVVL+E  KF+VK + +KK+ELA+I+ VLKA K I+K +  YL  IVDTQA+ NDP S+ IVC+YL+V            EI+F
Subjt:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF

Query:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKD
        TIEVVL TTPISQT Y M  SELKELKDQLEELL+  YI+P+TSPWG        +LFVKK D
Subjt:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKD

TYK02467.1 uncharacterized protein E5676_scaffold1738G00930 [Cucumis melo var. makuwa]

4.5e-37

54.34

Show/hide

Query:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF
        M+FLTKYH +LDCSNKEVVLRE  KFEVK+                        HT YLA ++DT+ +++D +++ IVCEYL+V            EIE 
Subjt:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF

Query:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDYR
        TI+V+  TTPISQT YRM  SELKELKDQLEELL+ G I+PST PWG +P     +LFVKKKDGSMRLC DYR
Subjt:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDYR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7THJ0 DNA/RNA polymerases superfamily protein

2.9e-37

55.23

Show/hide

Query:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF
        M+FLTKYHA+LDCSNKEVVLRE  KFEVK+                        HT YLA ++DTQ +++D  ++ IV EYL+V            EIE 
Subjt:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF

Query:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDY
        TI+V+  TTPISQT YRM  SELKELKDQLEELL+ GYI+PST PWG +P     +LFVKKKDGSMRLC DY
Subjt:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDY

A0A5A7TI15 Reverse transcriptase

1.1e-36

54.34

Show/hide

Query:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF
        MDFL  ++A +DC  KEVV R+P   EV F   KK+   S++ VLKA KL++KG TT+LA IV  Q  +  P  + +V E+L+V            EIEF
Subjt:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF

Query:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDYR
        TIE++ GT PISQ LYRM  SELKELK QL+EL+D GYIRPS SPWGA       VLFVKKKDG++RLC DYR
Subjt:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDYR

A0A5D3BRB8 DNA/RNA polymerases superfamily protein

7.3e-41

60.12

Show/hide

Query:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF
        M FLTKYHA  DCSN EVVL+E  KF+VK + +KK+ELA+I+ VLKA K I+K +  YL  IVDTQA+ NDP S+ IVC+YL+V            EI+F
Subjt:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF

Query:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKD
        TIEVVL TTPISQT Y M  SELKELKDQLEELL+  YI+P+TSPWG        +LFVKK D
Subjt:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKD

A0A5D3BSQ2 Uncharacterized protein

2.2e-37

54.34

Show/hide

Query:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF
        M+FLTKYH +LDCSNKEVVLRE  KFEVK+                        HT YLA ++DT+ +++D +++ IVCEYL+V            EIE 
Subjt:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF

Query:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDYR
        TI+V+  TTPISQT YRM  SELKELKDQLEELL+ G I+PST PWG +P     +LFVKKKDGSMRLC DYR
Subjt:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDYR

A0A5D3D2P1 Putative Retrotransposon protein

1.0e-42

56.07

Show/hide

Query:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF
        ++FLTKYHA+ D SNKEVVLR+P K E+KF  DK++E   I+ VLKA KL+K  H +YLA +++T A RNDP  + IVCEY++V            EI+F
Subjt:  MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNV------------EIEF

Query:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDYR
        TIE+V GTTPISQT YRM L ELKELK+QL+EL++  YI+P TSPW A       +LF +K+DGS+RLC DYR
Subjt:  TIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDYR

SwissProt top hits

e value

%identity

Alignment

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

9.6e-06

34.69

Show/hide

Query:  QAIRND--PRSIFIVCEYLNVEIEFTIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDYR
        + IRND  PR      +  N+ ++  IE+  G        Y +T    +E+   +++LLDN +I PS SP          V+ V KKDG+ RLC DYR
Subjt:  QAIRND--PRSIFIVCEYLNVEIEFTIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDYR

Q99315 Transposon Ty3-G Gag-Pol polyprotein

9.6e-06

34.69

Show/hide

Query:  QAIRND--PRSIFIVCEYLNVEIEFTIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDYR
        + IRND  PR      +  N+ ++  IE+  G        Y +T    +E+   +++LLDN +I PS SP          V+ V KKDG+ RLC DYR
Subjt:  QAIRND--PRSIFIVCEYLNVEIEFTIEVVLGTTPISQTLYRMTLSELKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDYR

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATTTCCTCACCAAGTATCACGCAATGTTGGATTGCTCCAATAAGGAGGTAGTATTGAGAGAACCAACAAAATTTGAAGTTAAATTTATATGCGACAAGAAAATGGA
ATTAGCGAGTATAATGTTAGTACTTAAGGCGAGTAAGTTGATTAAAAAGGGGCATACCACTTACCTTGCTCGCATAGTAGACACCCAGGCGATAAGGAATGACCCAAGAA
GTATATTTATAGTTTGTGAGTACTTAAATGTAGAAATTGAGTTTACGATTGAAGTTGTGCTTGGAACAACACCAATTTCTCAAACCCTTTATCGCATGACATTAAGCGAG
TTGAAGGAATTGAAAGATCAATTGGAGGAATTATTAGATAATGGTTATATTCGACCTAGTACCTCACCTTGGGGAGCTCTACCTCACCTTGGGGAGCTCGTCTTATTTGT
AAAGAAGAAAGATGGATCAATGAGGCTATGTACTGATTACCGATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDFLTKYHAMLDCSNKEVVLREPTKFEVKFICDKKMELASIMLVLKASKLIKKGHTTYLARIVDTQAIRNDPRSIFIVCEYLNVEIEFTIEVVLGTTPISQTLYRMTLSE
LKELKDQLEELLDNGYIRPSTSPWGALPHLGELVLFVKKKDGSMRLCTDYR

PI0028976 (gene) of Melon (PI 482460) v1 genome