CuGenDBv2

Gene ID	PI0028982
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Nucleolar protein 16
Genome location	chr01:24859857..24862136
RNA-Seq Expression	PI0028982
Synteny	PI0028982
Gene Ontology terms	GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component)
InterPro domains	IPR019002 - Ribosome biogenesis protein Nop16

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004136032.1 uncharacterized protein LOC101209910 [Cucumis sativus]

3.2e-98

96.88

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEE PTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPD+VL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRKRR
        DSSGSDVEEDDLKTALGKKRKDGKSA LQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLIL RKRR
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRKRR

XP_008451586.1 PREDICTED: uncharacterized protein LOC103492822 [Cucumis melo]

5.0e-99

98.42

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEE PTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRK
        DSSGSDVEEDDLKTALGKKRKDGKSA LQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL RK
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRK

XP_022991747.1 uncharacterized protein LOC111488281 [Cucurbita maxima]

5.0e-91

90.16

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEE P WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQV    PPSDDP
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
        DSVLDSSGSDVEEDDLKTALGKKRKDGKSA L+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL R
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

XP_023547523.1 uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]

1.9e-90

89.64

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEE P WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQV    PPSDDP
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
        DSVLDSSGSDVEEDDLKTALGKKRKDGKSA L+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRYH CLDKNPLIL R
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

XP_038898931.1 nucleolar protein 16 [Benincasa hispida]

1.8e-93

91.28

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP
        MGRSRRKYK+SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEE PTWD+K  VI NYKSFGVISNPNLLSVRSRTDHIVESDSLQV    PPSD+P
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRKR
        DSVLDSSGSDVEEDDLKTALGKKRKDGKSA LQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRK+
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRKR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAV9 Nucleolar protein 16

1.6e-98

96.88

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEE PTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPD+VL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRKRR
        DSSGSDVEEDDLKTALGKKRKDGKSA LQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY+SCLD NPLIL RKRR
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRKRR

A0A1S3BSM4 Nucleolar protein 16

2.4e-99

98.42

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEE PTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRK
        DSSGSDVEEDDLKTALGKKRKDGKSA LQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL RK
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRK

A0A5A7VLA5 Nucleolar protein 16

2.4e-99

98.42

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL
        MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEE PTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVL

Query:  DSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRK
        DSSGSDVEEDDLKTALGKKRKDGKSA LQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL RK
Subjt:  DSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRK

A0A6J1GRW5 Nucleolar protein 16

2.7e-90

89.12

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEE P WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESD LQV    PPSDDP
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
        DSVLDSSGSDVEEDDLKTALGKKR+DGKSA L+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL R
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

A0A6J1JMQ4 Nucleolar protein 16

2.4e-91

90.16

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEE P WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQV    PPSDDP
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
        DSVLDSSGSDVEEDDLKTALGKKRKDGKSA L+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL R
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G02870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

9.5e-64

62.56

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Query:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV-----PPSDD
        M RSRRKY+ SR KV+V LPK+NPN+FKP+F  PPKLR+L+    ++ P WD++ SVIQNYKSFGVISNPNLL +R+RTDH+++ DSL V     PP+DD
Subjt:  MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQV-----PPSDD

Query:  P---DSVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL
        P   +     SGS++EEDDLKTALGK+RKDGKSA LQPLTT+QR H+ +L+EK+GDD + M+ D KLNSMQHSVATL KLC RY    DKNP+++
Subjt:  P---DSVLDSSGSDVEEDDLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL

Sequences

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CDS sequence

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ATGGGAAGGTCTCGAAGAAAGTACAAGAAATCTCGCCCAAAAGTTAAGGTTGGTTTGCCCAAAAGAAACCCTAATGTCTTCAAGCCATCTTTTTGCATGCCGCCTAAGCT
CCGCTCCTTGCTCGCCGAACAATTTGAAGAAGGTCCAACATGGGATGAGAAAGGAAGTGTCATTCAAAACTATAAATCCTTCGGTGTTATTTCTAATCCTAATTTGCTCA
GTGTTCGTTCCCGCACTGATCACATCGTTGAGAGCGACTCTCTCCAAGTCCCGCCGTCCGATGATCCTGACTCCGTTCTTGATTCTTCCGGTAGTGATGTTGAAGAGGAC
GATTTGAAAACAGCATTGGGAAAGAAGCGCAAAGATGGGAAATCTGCATCTCTACAACCATTGACCACACTTCAGCGTGTTCATGTCGGTAAGCTAATCGAGAAATATGG
AGATGATTACCAGAGGATGTTTATGGATACAAAGCTGAACTCAATGCAGCATTCTGTCGCCACTCTAGAGAAACTATGCAAAAGATATCACAGTTGTTTAGATAAGAATC
CATTGATATTGATTCGTAAACGACGATAG

mRNA sequence

Show/hide mRNA sequence

ATAAACCCTACGAAATCCCAAATGAGTTCTTCATCTTCCACATACTAAAACCCTAGCCACCAATTTCCTTTTATCCTTCCAATTCACAGAGATGGGAAGGTCTCGAAGAA
AGTACAAGAAATCTCGCCCAAAAGTTAAGGTTGGTTTGCCCAAAAGAAACCCTAATGTCTTCAAGCCATCTTTTTGCATGCCGCCTAAGCTCCGCTCCTTGCTCGCCGAA
CAATTTGAAGAAGGTCCAACATGGGATGAGAAAGGAAGTGTCATTCAAAACTATAAATCCTTCGGTGTTATTTCTAATCCTAATTTGCTCAGTGTTCGTTCCCGCACTGA
TCACATCGTTGAGAGCGACTCTCTCCAAGTCCCGCCGTCCGATGATCCTGACTCCGTTCTTGATTCTTCCGGTAGTGATGTTGAAGAGGACGATTTGAAAACAGCATTGG
GAAAGAAGCGCAAAGATGGGAAATCTGCATCTCTACAACCATTGACCACACTTCAGCGTGTTCATGTCGGTAAGCTAATCGAGAAATATGGAGATGATTACCAGAGGATG
TTTATGGATACAAAGCTGAACTCAATGCAGCATTCTGTCGCCACTCTAGAGAAACTATGCAAAAGATATCACAGTTGTTTAGATAAGAATCCATTGATATTGATTCGTAA
ACGACGATAGCTCCTTCATCTTTCAAATTGTTTTGTTACAAGAGGTGAAAATCAGATAAGGTATGATCATGAAATTTTATTGAGCAATATTGTTTTGAAACTAAATGTAT
GAGCCTTAATAGATGAACCATTCTTCCTGCTTCCTGTAGTTTTATTCCTTAAAAAAACTGCTCATAATTTTAATTCATGTTTAGTTGGTGGCATCTAGGGAATTTTTCAT
TTTAGGGAACCGATGGTGTGTTTGGAATAATTTTGAGAAAAAAATGCTTTCAAAATCAAATTGATTCTTCTATAAACACCTTCCAAAAATTAATAATTTTAAGTGTGGGT
AGTATAGGTTATGGAGTGATTTTAGATTAAGAAAAGTGGTTTTTTTTAAAAAAAAATCTTAATAAATAAGTAGTTCAAGCGATATGAATGACGTACTAAGTACGGTTATT
TTTGTATAAAGTAGGTGTACTTTTGTAAGTTTCATATCATTTTGGTATAAAAAATTCTTTGGACAATCTTTCCTAGATGGATTGCTCTAAAAATGTCCTAAAAATTTAAA
TTGTTTAGTAGAAAATCCTCAAAATACGTTTTAAGAAATAGAGATATATTTTATAATTCATAGAATCTATTGTAATATCAACTTAACAAATTTGCCATTGAAAATATAAG
ATATAATTACAAGATATAATTACGATTTTATTTATTTTTGAAGTTGTTAAACTAGACTTTATTTGAAAGGACAATTGTTTTTAGATGACAAAACAGTTGAAAATGC

Protein sequence

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MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEGPTWDEKGSVIQNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSDDPDSVLDSSGSDVEED
DLKTALGKKRKDGKSASLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIRKRR

PI0028982 (gene) of Melon (PI 482460) v1 genome