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PI0028996 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028996
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr12:10896358..10896795
RNA-Seq ExpressionPI0028996
SyntenyPI0028996
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026281.1 reverse transcriptase [Cucumis melo var. makuwa]7.9e-4067.13Show/hide
Query:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------
        MGEA V IG+LGSLIAHFQVRP LI+RII+AQ  D +++KLAEEVR N R+NYSLR DGA MKY+RLC+  DQA K QIL+EAH SAYAMH  S      
Subjt:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------

Query:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLNPLLV
                 MK EIA+YVAKCLICQQVK ERQRPA LLNPL V
Subjt:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLNPLLV

KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.5e-4167.83Show/hide
Query:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------
        M EA V +GKLGSLIAHFQV+P LI+RII+AQ  D  L+KLAEEVR N R+NYSL+DD ALMKY+RLC+  DQ  KDQIL+EAH SAYAMH  S      
Subjt:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------

Query:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLNPLLV
                 MKREIA+YVAKCLICQQVK ERQRPAGLLNPL V
Subjt:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLNPLLV

KAA0042192.1 polyprotein [Cucumis melo var. makuwa]5.5e-4168.35Show/hide
Query:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------
        MGEATV +GKLGSLIAHFQVRP LI+ IIQAQ  D +L+KLAEEVRLN  +N++LR DGALMKY+RLC+ +DQ  KDQIL+EAH SAYAMH  S      
Subjt:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------

Query:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLN
                 MKREI EYVA CLICQQVK ERQRPAGLLN
Subjt:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLN

KAA0056222.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-4167.59Show/hide
Query:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------
        MGEA V +GKL SL+AHFQVRP LI+RII+AQ  D  L+KLAEEVR N R+NYSLR DGALMK +RLC+  DQ  KDQILEEAH SAYAMH  S      
Subjt:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------

Query:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLNPLLVPK
                 +KREIA+YVAKCLICQQVK ERQRPAGLLNPL VP+
Subjt:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLNPLLVPK

KAA0067054.1 putative Retrotransposon protein [Cucumis melo var. makuwa]3.2e-4167.83Show/hide
Query:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------
        MGE    +GKLGSLIAHFQVRP LI+RII+AQ  D +L+KLAEEVR N R+NYSLR D ALMKY+RLC+  DQA KDQILEEAH SAYAMH  S      
Subjt:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------

Query:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLNPLLV
                 MKREIA+YVAKCLICQQVK E QRP GLLNPL V
Subjt:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLNPLLV

TrEMBL top hitse value%identityAlignment
A0A5A7UK27 Reverse transcriptase9.1e-4267.59Show/hide
Query:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------
        MGEA V +GKL SL+AHFQVRP LI+RII+AQ  D  L+KLAEEVR N R+NYSLR DGALMK +RLC+  DQ  KDQILEEAH SAYAMH  S      
Subjt:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------

Query:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLNPLLVPK
                 +KREIA+YVAKCLICQQVK ERQRPAGLLNPL VP+
Subjt:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLNPLLVPK

A0A5A7VI68 Putative Retrotransposon protein1.6e-4167.83Show/hide
Query:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------
        MGE    +GKLGSLIAHFQVRP LI+RII+AQ  D +L+KLAEEVR N R+NYSLR D ALMKY+RLC+  DQA KDQILEEAH SAYAMH  S      
Subjt:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------

Query:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLNPLLV
                 MKREIA+YVAKCLICQQVK E QRP GLLNPL V
Subjt:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLNPLLV

A0A5D3DCU0 Reverse transcriptase3.8e-4067.13Show/hide
Query:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------
        MGEA V IG+LGSLIAHFQVRP LI+RII+AQ  D +++KLAEEVR N R+NYSLR DGA MKY+RLC+  DQA K QIL+EAH SAYAMH  S      
Subjt:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------

Query:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLNPLLV
                 MK EIA+YVAKCLICQQVK ERQRPA LLNPL V
Subjt:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLNPLLV

A0A5D3DES5 DNA/RNA polymerases superfamily protein2.6e-4167.83Show/hide
Query:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------
        M EA V +GKLGSLIAHFQV+P LI+RII+AQ  D  L+KLAEEVR N R+NYSL+DD ALMKY+RLC+  DQ  KDQIL+EAH SAYAMH  S      
Subjt:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------

Query:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLNPLLV
                 MKREIA+YVAKCLICQQVK ERQRPAGLLNPL V
Subjt:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLNPLLV

A0A5D3DTE8 Polyprotein2.6e-4168.35Show/hide
Query:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------
        MGEATV +GKLGSLIAHFQVRP LI+ IIQAQ  D +L+KLAEEVRLN  +N++LR DGALMKY+RLC+ +DQ  KDQIL+EAH SAYAMH  S      
Subjt:  MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRS------

Query:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLN
                 MKREI EYVA CLICQQVK ERQRPAGLLN
Subjt:  ---------MKREIAEYVAKCLICQQVKSERQRPAGLLN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGAGGCAACTGTGTTAATAGGCAAGCTGGGTAGTTTAATCGCACATTTTCAAGTGAGACCTACCTTGATAAATCGTATTATTCAAGCTCAGCCAGGAGATACAGT
GCTTAAGAAGTTAGCTGAAGAAGTAAGATTAAACATTCGAATGAATTATAGTTTGAGGGATGATGGTGCCTTGATGAAATATAATAGGTTGTGTATGTCTAAAGATCAAG
CATTTAAAGATCAAATTTTAGAAGAAGCACATGGTTCTGCATACGCAATGCATCTCAGAAGTATGAAGCGTGAAATTGCAGAATATGTGGCTAAGTGTTTGATCTGTCAG
CAAGTTAAATCGGAACGTCAGAGACCAGCGGGACTCCTAAATCCACTTCTAGTGCCAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCGAGGCAACTGTGTTAATAGGCAAGCTGGGTAGTTTAATCGCACATTTTCAAGTGAGACCTACCTTGATAAATCGTATTATTCAAGCTCAGCCAGGAGATACAGT
GCTTAAGAAGTTAGCTGAAGAAGTAAGATTAAACATTCGAATGAATTATAGTTTGAGGGATGATGGTGCCTTGATGAAATATAATAGGTTGTGTATGTCTAAAGATCAAG
CATTTAAAGATCAAATTTTAGAAGAAGCACATGGTTCTGCATACGCAATGCATCTCAGAAGTATGAAGCGTGAAATTGCAGAATATGTGGCTAAGTGTTTGATCTGTCAG
CAAGTTAAATCGGAACGTCAGAGACCAGCGGGACTCCTAAATCCACTTCTAGTGCCAAAGTGA
Protein sequenceShow/hide protein sequence
MGEATVLIGKLGSLIAHFQVRPTLINRIIQAQPGDTVLKKLAEEVRLNIRMNYSLRDDGALMKYNRLCMSKDQAFKDQILEEAHGSAYAMHLRSMKREIAEYVAKCLICQ
QVKSERQRPAGLLNPLLVPK