CuGenDBv2

Gene ID	PI0029008
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	60S ribosomal protein L30
Genome location	chr02:3509697..3511087
RNA-Seq Expression	PI0029008
Synteny	PI0029008
Gene Ontology terms	GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45 IPR022991 - Ribosomal protein L30e, conserved site IPR029064 - 50S ribosomal protein L30e-like IPR039109 - Ribosomal protein L30/YlxQ

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004251199.1 60S ribosomal protein L30 [Solanum lycopersicum]

3.0e-39

77.98

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Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKT ++ +          +  +  LG +TVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKSMP
Subjt:  DSDIIKSMP

XP_008451087.1 PREDICTED: 60S ribosomal protein L30 [Cucumis melo]

1.2e-40

79.28

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Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKT ++ +          +  +  LG +TVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

XP_011660089.1 60S ribosomal protein L30 [Cucumis sativus]

4.7e-40

78.38

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Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKT ++ +          +  +  LG +TVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

XP_022960585.1 60S ribosomal protein L30-like [Cucurbita moschata]

3.0e-39

77.98

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Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKT ++ +          +  +  LG +TVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

XP_038878626.1 60S ribosomal protein L30 [Benincasa hispida]

1.4e-39

78.9

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Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKT ++ +          +  +  LG +TVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKSMP
Subjt:  DSDIIKSMP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LXA9 Ribosomal_L7Ae domain-containing protein

2.3e-40

78.38

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Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKT ++ +          +  +  LG +TVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

A0A1S3BQS6 60S ribosomal protein L30

6.0e-41

79.28

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Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKT ++ +          +  +  LG +TVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

A0A3Q7J0N1 Ribosomal_L7Ae domain-containing protein

1.5e-39

77.98

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Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKT ++ +          +  +  LG +TVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKSMP
Subjt:  DSDIIKSMP

A0A5D3CI16 60S ribosomal protein L30

6.0e-41

79.28

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Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKT ++ +          +  +  LG +TVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

A0A6J1JJ11 60S ribosomal protein L30-like

1.5e-39

77.98

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Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKT ++ +          +  +  LG +TVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

SwissProt top hits

e value

%identity

Alignment

O48558 60S ribosomal protein L30

1.0e-37

70.64

Show/hide

Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVA KKT +S D          +  +  LG +TVL+TLRNSK KL+IIANNCPPLRKSEIEYYAMLAKV VHH++G+NVDLGTACGKY+RVCCLSIIDPG
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIK+ P
Subjt:  DSDIIKSMP

O49884 60S ribosomal protein L30

2.9e-40

73.39

Show/hide

Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKT ++ +          +  +  LG +TVLK+LR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSI+DPG
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIK++P
Subjt:  DSDIIKSMP

Q9C8F7 Putative 60S ribosomal protein L30-1

1.9e-36

67.89

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Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKT +S +          +  +  LG ++VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

Q9M5M6 60S ribosomal protein L30

1.6e-38

71.56

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Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKT ++ +          +  +  LG +TVL++LR++KGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RVCCLSIID G
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

Q9SDG6 60S ribosomal protein L30

2.3e-37

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Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKT +S D          +  +  LG +TVL+TLRNSK KL+II+NNCPPLRKSEIEYYAMLAKV VHH++G+NVDLGTACGKY+RVCCLSIIDPG
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPE
        DSDIIK+  E
Subjt:  DSDIIKSMPE

Arabidopsis top hits

e value

%identity

Alignment

AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

1.4e-37

67.89

Show/hide

Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKT +S +          +  +  LG ++VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

AT1G77940.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

4.0e-37

66.97

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Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MV  KKT +S +          +  +  LG ++VLK+LR SKGKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

AT3G18740.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

4.4e-36

65.14

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Query:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVA KK  +S +          +  +  LG ++VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTTRSRD----------EEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIK++P
Subjt:  DSDIIKSMP

Sequences

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CDS sequence

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ATGGTGGCCGCAAAGAAGACGACTCGCTCTCGTGATGAAGAGTGGGAAATACACCTTGGGATACAAACCGTCCTCAAGACCTTGAGGAACTCTAAAGGTAAGCTGATTAT
CATTGCCAACAACTGCCCTCCACTCCGAAAGTCCGAGATCGAATACTATGCAATGTTGGCCAAGGTTGGAGTTCACCATTACAATGGAAGTAATGTCGACCTTGGAACCG
CTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCCGGTGATTCGGATATTATCAAGAGCATGCCCGAAAGTTAG

mRNA sequence

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Protein sequence

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MVAAKKTTRSRDEEWEIHLGIQTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPES

PI0029008 (gene) of Melon (PI 482460) v1 genome