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PI0029074 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0029074
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr08:7018788..7018952
RNA-Seq ExpressionPI0029074
SyntenyPI0029074
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050781.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-1478.85Show/hide
Query:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH
        MTN  I ++IDE DST+ATT  DDIHYIETSNEWSQW DDLAEEMF+EWELH
Subjt:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH

KAA0053146.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.1e-1476.92Show/hide
Query:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH
        MTNI I +DIDE DST+ATT GDDI+YIET+NEW+QW D+LAEEMFS+WELH
Subjt:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH

KAA0065893.1 retrotransposon protein [Cucumis melo var. makuwa]4.0e-1478.43Show/hide
Query:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWEL
        MTN  I ++IDE DST+ATT+ DDIHYIETSNEWSQW DDLAEEMF+EWEL
Subjt:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWEL

TYK08565.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-1478.85Show/hide
Query:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH
        MTN  I ++IDE DST+ATT  DDIHYIETSNEWSQW DDLAEEMF+EWELH
Subjt:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH

TYK27175.1 retrotransposon protein [Cucumis melo var. makuwa]5.3e-1480.39Show/hide
Query:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWEL
        MTN  I ++IDE DST+ATT  DDIHYIETSNEWSQW DDLAEEMFSEWEL
Subjt:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWEL

TrEMBL top hitse value%identityAlignment
A0A5A7UB39 Retrotransposon protein8.8e-1578.85Show/hide
Query:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH
        MTN  I ++IDE DST+ATT  DDIHYIETSNEWSQW DDLAEEMF+EWELH
Subjt:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH

A0A5A7UFY9 Putative nuclease HARBI11.5e-1476.92Show/hide
Query:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH
        MTNI I +DIDE DST+ATT GDDI+YIET+NEW+QW D+LAEEMFS+WELH
Subjt:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH

A0A5A7VCK9 Retrotransposon protein2.0e-1478.43Show/hide
Query:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWEL
        MTN  I ++IDE DST+ATT+ DDIHYIETSNEWSQW DDLAEEMF+EWEL
Subjt:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWEL

A0A5D3BCB2 Retrotransposon protein2.6e-1468.52Show/hide
Query:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELHAH
        MTN  IP+DIDE  S++ATT+GDDIHY+ETSNEWS+W D+L +EMFS+WEL  H
Subjt:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELHAH

A0A5D3CAK2 Retrotransposon protein8.8e-1578.85Show/hide
Query:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH
        MTN  I ++IDE DST+ATT  DDIHYIETSNEWSQW DDLAEEMF+EWELH
Subjt:  MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAACATTGGTATACCGAATGATATCGATGAGGGTGATTCGACATATGCAACAACTATAGGTGACGACATTCACTACATTGAGACCTCGAACGAATGGAGCCAATG
GGGGGATGATCTGGCTGAAGAAATGTTTAGTGAATGGGAGTTACATGCTCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAAACATTGGTATACCGAATGATATCGATGAGGGTGATTCGACATATGCAACAACTATAGGTGACGACATTCACTACATTGAGACCTCGAACGAATGGAGCCAATG
GGGGGATGATCTGGCTGAAGAAATGTTTAGTGAATGGGAGTTACATGCTCATTAG
Protein sequenceShow/hide protein sequence
MTNIGIPNDIDEGDSTYATTIGDDIHYIETSNEWSQWGDDLAEEMFSEWELHAH