; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0029089 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0029089
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:11107738..11108744
RNA-Seq ExpressionPI0029089
SyntenyPI0029089
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031967.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-7251.48Show/hide
Query:  MTRSSNQELYFFEDLNRETRRIRRERREETILNIP----QDLLDNKEPNLE---QSNLDRETMGQVREKTLRELSEPNEDQ-------------------
        MTRSSN E  +FEDLN+E RRIRRERREE   NIP    Q+ L   EP+L+     NL R  MG+VREKT+R+L E +EDQ                   
Subjt:  MTRSSNQELYFFEDLNRETRRIRRERREETILNIP----QDLLDNKEPNLE---QSNLDRETMGQVREKTLRELSEPNEDQ-------------------

Query:  -----------------------------------------------------------------------------------RANNIRKEIYVIRQAFG
                                                                                           R NNIRKEIY IRQAFG
Subjt:  -----------------------------------------------------------------------------------RANNIRKEIYVIRQAFG

Query:  ESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELISWMVENSQNFGNRTSELDNSLTKEVSELKSQMLNMTT
        ESL +YWE+FKELCA+FPHHHIF PSLIQYFY GLL+ DRNTVDAAAGGALA+K PTEARELIS M +NSQ FGNR SEL+NSLTKEVSELKSQMLNMTT
Subjt:  ESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELISWMVENSQNFGNRTSELDNSLTKEVSELKSQMLNMTT

Query:  LLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEANV
        LLTSFVQG  +KV KC VCGLVGHPNDKCP+++EE N+
Subjt:  LLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEANV

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-6583.23Show/hide
Query:  RANNIRKEIYVIRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELISWMVENSQNFGNRTSELDNS
        RANNIRKEIY IRQ FGESLSEY ERFKELCASFPHHHI DPSLIQY Y  LL+ DRNTVDA AGGALADK PTEARELIS M ENSQ+F NR SELDNS
Subjt:  RANNIRKEIYVIRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELISWMVENSQNFGNRTSELDNS

Query:  LTKEVSELKSQMLNMTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEANV
        LTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N+
Subjt:  LTKEVSELKSQMLNMTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEANV

KAA0058150.1 uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa]1.6e-7078.29Show/hide
Query:  TMGQVREKTLRELSEPNEDQRANNIRKEIYVIRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELI
        T G +++K L +    +   RANNIRKEIY IRQAFGESLS+YWERFKELCAS PH+HIFDPSLIQYFYSGLL+ DRNTVDAA GGALADKTPTEAR+LI
Subjt:  TMGQVREKTLRELSEPNEDQRANNIRKEIYVIRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELI

Query:  SWMVENSQNFGNRTSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEANV
        S M+ENSQ+FGNR SELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N+
Subjt:  SWMVENSQNFGNRTSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEANV

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.6e-6776.57Show/hide
Query:  TMGQVREKTLRELSEPNEDQRANNIRKEIYVIRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELI
        T G +++K L +    +   RANNIRKEIY IRQAFGESLS+YW+R KELCASFPHHHI DPSLIQYF+SGLL+ DRNT+D  AGGALADKTPTEARELI
Subjt:  TMGQVREKTLRELSEPNEDQRANNIRKEIYVIRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELI

Query:  SWMVENSQNFGNRTSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEANV
        S MVENSQ+FGNR SELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKC  ++E+ N+
Subjt:  SWMVENSQNFGNRTSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEANV

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.5e-6863.72Show/hide
Query:  MGQVREKTLRELSEPNEDQ----------------------------------------------------RANNIRKEIYVIRQAFGESLSEYWERFKE
        MG+VREKTLREL+EP+EDQ                                                    RANNIRKEIY IRQAF ESLSEYWERFKE
Subjt:  MGQVREKTLRELSEPNEDQ----------------------------------------------------RANNIRKEIYVIRQAFGESLSEYWERFKE

Query:  LCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELISWMVENSQNFGNRTSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSIK
        LCASFPHHHIFDPSL QYFYSGLL+ DRNTVDA AG ALADKTPTEA ELIS M EN Q+FGNR S+L+N LTKEVSELKS+MLNMTTLLTSFVQG   K
Subjt:  LCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELISWMVENSQNFGNRTSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSIK

Query:  VAKCGVCGLVGHPNDKCPDLVEEANV
        V KCGVCGLVGHPNDKCP+++E+ N+
Subjt:  VAKCGVCGLVGHPNDKCPDLVEEANV

TrEMBL top hitse value%identityAlignment
A0A5A7SRF5 Retrotransposon gag protein8.0e-7351.48Show/hide
Query:  MTRSSNQELYFFEDLNRETRRIRRERREETILNIP----QDLLDNKEPNLE---QSNLDRETMGQVREKTLRELSEPNEDQ-------------------
        MTRSSN E  +FEDLN+E RRIRRERREE   NIP    Q+ L   EP+L+     NL R  MG+VREKT+R+L E +EDQ                   
Subjt:  MTRSSNQELYFFEDLNRETRRIRRERREETILNIP----QDLLDNKEPNLE---QSNLDRETMGQVREKTLRELSEPNEDQ-------------------

Query:  -----------------------------------------------------------------------------------RANNIRKEIYVIRQAFG
                                                                                           R NNIRKEIY IRQAFG
Subjt:  -----------------------------------------------------------------------------------RANNIRKEIYVIRQAFG

Query:  ESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELISWMVENSQNFGNRTSELDNSLTKEVSELKSQMLNMTT
        ESL +YWE+FKELCA+FPHHHIF PSLIQYFY GLL+ DRNTVDAAAGGALA+K PTEARELIS M +NSQ FGNR SEL+NSLTKEVSELKSQMLNMTT
Subjt:  ESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELISWMVENSQNFGNRTSELDNSLTKEVSELKSQMLNMTT

Query:  LLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEANV
        LLTSFVQG  +KV KC VCGLVGHPNDKCP+++EE N+
Subjt:  LLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEANV

A0A5A7USL5 Retrotrans_gag domain-containing protein7.5e-7178.29Show/hide
Query:  TMGQVREKTLRELSEPNEDQRANNIRKEIYVIRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELI
        T G +++K L +    +   RANNIRKEIY IRQAFGESLS+YWERFKELCAS PH+HIFDPSLIQYFYSGLL+ DRNTVDAA GGALADKTPTEAR+LI
Subjt:  TMGQVREKTLRELSEPNEDQRANNIRKEIYVIRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELI

Query:  SWMVENSQNFGNRTSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEANV
        S M+ENSQ+FGNR SELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N+
Subjt:  SWMVENSQNFGNRTSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEANV

A0A5A7V0Q7 Retrotransposon gag protein1.7e-6776.57Show/hide
Query:  TMGQVREKTLRELSEPNEDQRANNIRKEIYVIRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELI
        T G +++K L +    +   RANNIRKEIY IRQAFGESLS+YW+R KELCASFPHHHI DPSLIQYF+SGLL+ DRNT+D  AGGALADKTPTEARELI
Subjt:  TMGQVREKTLRELSEPNEDQRANNIRKEIYVIRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELI

Query:  SWMVENSQNFGNRTSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEANV
        S MVENSQ+FGNR SELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKC  ++E+ N+
Subjt:  SWMVENSQNFGNRTSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEANV

A0A5D3CFE7 Retrotransposon gag protein2.7e-6863.72Show/hide
Query:  MGQVREKTLRELSEPNEDQ----------------------------------------------------RANNIRKEIYVIRQAFGESLSEYWERFKE
        MG+VREKTLREL+EP+EDQ                                                    RANNIRKEIY IRQAF ESLSEYWERFKE
Subjt:  MGQVREKTLRELSEPNEDQ----------------------------------------------------RANNIRKEIYVIRQAFGESLSEYWERFKE

Query:  LCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELISWMVENSQNFGNRTSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSIK
        LCASFPHHHIFDPSL QYFYSGLL+ DRNTVDA AG ALADKTPTEA ELIS M EN Q+FGNR S+L+N LTKEVSELKS+MLNMTTLLTSFVQG   K
Subjt:  LCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELISWMVENSQNFGNRTSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSIK

Query:  VAKCGVCGLVGHPNDKCPDLVEEANV
        V KCGVCGLVGHPNDKCP+++E+ N+
Subjt:  VAKCGVCGLVGHPNDKCPDLVEEANV

A0A5D3CRR8 Retrotransposon gag protein7.3e-6683.23Show/hide
Query:  RANNIRKEIYVIRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELISWMVENSQNFGNRTSELDNS
        RANNIRKEIY IRQ FGESLSEY ERFKELCASFPHHHI DPSLIQY Y  LL+ DRNTVDA AGGALADK PTEARELIS M ENSQ+F NR SELDNS
Subjt:  RANNIRKEIYVIRQAFGESLSEYWERFKELCASFPHHHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELISWMVENSQNFGNRTSELDNS

Query:  LTKEVSELKSQMLNMTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEANV
        LTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N+
Subjt:  LTKEVSELKSQMLNMTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEANV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCGTTCTTCCAACCAAGAACTCTATTTCTTTGAAGACCTGAATAGGGAAACACGTAGGATTAGGAGAGAAAGGAGAGAAGAAACCATTTTGAACATCCCTCAAGA
TCTATTAGACAACAAAGAGCCTAATCTAGAACAATCAAACCTTGATAGAGAAACCATGGGGCAAGTTAGAGAGAAAACCTTAAGAGAGCTTTCCGAGCCTAACGAGGACC
AAAGAGCCAATAATATTCGGAAAGAAATCTACGTAATAAGGCAAGCTTTTGGGGAGTCCTTGTCTGAATATTGGGAAAGGTTTAAGGAGCTCTGCGCTAGCTTCCCCCAT
CACCATATTTTTGATCCATCACTAATACAATATTTCTATTCTGGACTACTAACTATGGATAGAAATACAGTAGATGCTGCAGCAGGTGGTGCTTTGGCTGACAAAACCCC
TACTGAGGCTAGAGAACTCATTTCATGGATGGTTGAAAATTCACAGAATTTTGGAAATAGGACATCCGAGCTCGACAATTCATTGACTAAGGAGGTAAGTGAACTCAAAT
CACAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTATTAAAGTTGCTAAGTGTGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGC
CCAGACTTAGTGGAAGAGGCAAATGTGGGCACTTGTCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACCCGTTCTTCCAACCAAGAACTCTATTTCTTTGAAGACCTGAATAGGGAAACACGTAGGATTAGGAGAGAAAGGAGAGAAGAAACCATTTTGAACATCCCTCAAGA
TCTATTAGACAACAAAGAGCCTAATCTAGAACAATCAAACCTTGATAGAGAAACCATGGGGCAAGTTAGAGAGAAAACCTTAAGAGAGCTTTCCGAGCCTAACGAGGACC
AAAGAGCCAATAATATTCGGAAAGAAATCTACGTAATAAGGCAAGCTTTTGGGGAGTCCTTGTCTGAATATTGGGAAAGGTTTAAGGAGCTCTGCGCTAGCTTCCCCCAT
CACCATATTTTTGATCCATCACTAATACAATATTTCTATTCTGGACTACTAACTATGGATAGAAATACAGTAGATGCTGCAGCAGGTGGTGCTTTGGCTGACAAAACCCC
TACTGAGGCTAGAGAACTCATTTCATGGATGGTTGAAAATTCACAGAATTTTGGAAATAGGACATCCGAGCTCGACAATTCATTGACTAAGGAGGTAAGTGAACTCAAAT
CACAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTATTAAAGTTGCTAAGTGTGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGC
CCAGACTTAGTGGAAGAGGCAAATGTGGGCACTTGTCATTAG
Protein sequenceShow/hide protein sequence
MTRSSNQELYFFEDLNRETRRIRRERREETILNIPQDLLDNKEPNLEQSNLDRETMGQVREKTLRELSEPNEDQRANNIRKEIYVIRQAFGESLSEYWERFKELCASFPH
HHIFDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELISWMVENSQNFGNRTSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKC
PDLVEEANVGTCH