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Pay0000013 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0000013
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionLa-related protein 1A isoform X1
Genome locationchr11:9534874..9542361
RNA-Seq ExpressionPay0000013
SyntenyPay0000013
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032482.1 la-related protein 1A isoform X1 [Cucumis melo var. makuwa]3.8e-5194.92Show/hide
Query:  MLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIMKGIKISSKVGAHDVDDLSSQFSSTFMLDEELEIKQKS
        MLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIMKGIKISSKVGAHDVDDLSSQFSSTFMLDEELEIKQKS
Subjt:  MLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIMKGIKISSKVGAHDVDDLSSQFSSTFMLDEELEIKQKS

Query:  IKKDDLTSNGRVGSQPID
        IKKDDLTSNGR    P++
Subjt:  IKKDDLTSNGRVGSQPID

KAA0032483.1 TBC1 domain family member 17 [Cucumis melo var. makuwa]1.2e-4490.48Show/hide
Query:  IEYATRKEDCQQMFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHQIDSKSMLNI
        IEYATRKEDCQQMFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHQI+ +  +++
Subjt:  IEYATRKEDCQQMFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHQIDSKSMLNI

Query:  ETSSN
        E  SN
Subjt:  ETSSN

KAE8649415.1 hypothetical protein Csa_021682 [Cucumis sativus]7.7e-4466.08Show/hide
Query:  LDGSRSTPNNNLETAKDPKIIQWMLTLH-QIDSKSMLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIM--
        LD   S+ N  ++  K  K  +W   +    DSKS LN+ETSS PVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCS EQFSSRD+ EVANLDI+  
Subjt:  LDGSRSTPNNNLETAKDPKIIQWMLTLH-QIDSKSMLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIM--

Query:  --------KGIKISSKVGAHDVDDLSSQFSSTFMLDEELEIKQKSIKKDDLTSNGRVGSQPIDHLSKNSKE
                +GIKISS VGAHDVDDLSSQFSSTFMLDEELEI+QK+IKKDDLTSNGR+  +  D ++ N ++
Subjt:  --------KGIKISSKVGAHDVDDLSSQFSSTFMLDEELEIKQKSIKKDDLTSNGRVGSQPIDHLSKNSKE

TYJ98320.1 la-related protein 1A isoform X2 [Cucumis melo var. makuwa]8.2e-4681.48Show/hide
Query:  MLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIMK------------------------GIKISSKVGAHD
        MLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDI+K                        GIKISSKVGAHD
Subjt:  MLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIMK------------------------GIKISSKVGAHD

Query:  VDDLSSQFSSTFMLDEELEIKQKSIKKDDLTSNGR
        VDDLSSQFSSTFMLDEELEIKQKSIKKDDLTSNGR
Subjt:  VDDLSSQFSSTFMLDEELEIKQKSIKKDDLTSNGR

XP_004149652.1 LOW QUALITY PROTEIN: la-related protein 1A [Cucumis sativus]7.7e-4466.08Show/hide
Query:  LDGSRSTPNNNLETAKDPKIIQWMLTLH-QIDSKSMLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIM--
        LD   S+ N  ++  K  K  +W   +    DSKS LN+ETSS PVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCS EQFSSRD+ EVANLDI+  
Subjt:  LDGSRSTPNNNLETAKDPKIIQWMLTLH-QIDSKSMLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIM--

Query:  --------KGIKISSKVGAHDVDDLSSQFSSTFMLDEELEIKQKSIKKDDLTSNGRVGSQPIDHLSKNSKE
                +GIKISS VGAHDVDDLSSQFSSTFMLDEELEI+QK+IKKDDLTSNGR+  +  D ++ N ++
Subjt:  --------KGIKISSKVGAHDVDDLSSQFSSTFMLDEELEIKQKSIKKDDLTSNGRVGSQPIDHLSKNSKE

TrEMBL top hitse value%identityAlignment
A0A0A0KWS8 HTH La-type RNA-binding domain-containing protein3.7e-4466.08Show/hide
Query:  LDGSRSTPNNNLETAKDPKIIQWMLTLH-QIDSKSMLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIM--
        LD   S+ N  ++  K  K  +W   +    DSKS LN+ETSS PVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCS EQFSSRD+ EVANLDI+  
Subjt:  LDGSRSTPNNNLETAKDPKIIQWMLTLH-QIDSKSMLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIM--

Query:  --------KGIKISSKVGAHDVDDLSSQFSSTFMLDEELEIKQKSIKKDDLTSNGRVGSQPIDHLSKNSKE
                +GIKISS VGAHDVDDLSSQFSSTFMLDEELEI+QK+IKKDDLTSNGR+  +  D ++ N ++
Subjt:  --------KGIKISSKVGAHDVDDLSSQFSSTFMLDEELEIKQKSIKKDDLTSNGRVGSQPIDHLSKNSKE

A0A5A7SN62 La-related protein 1A isoform X11.9e-5194.92Show/hide
Query:  MLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIMKGIKISSKVGAHDVDDLSSQFSSTFMLDEELEIKQKS
        MLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIMKGIKISSKVGAHDVDDLSSQFSSTFMLDEELEIKQKS
Subjt:  MLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIMKGIKISSKVGAHDVDDLSSQFSSTFMLDEELEIKQKS

Query:  IKKDDLTSNGRVGSQPID
        IKKDDLTSNGR    P++
Subjt:  IKKDDLTSNGRVGSQPID

A0A5A7SQ27 TBC1 domain family member 175.8e-4590.48Show/hide
Query:  IEYATRKEDCQQMFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHQIDSKSMLNI
        IEYATRKEDCQQMFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHQI+ +  +++
Subjt:  IEYATRKEDCQQMFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHQIDSKSMLNI

Query:  ETSSN
        E  SN
Subjt:  ETSSN

A0A5D3BEU8 La-related protein 1A isoform X24.0e-4681.48Show/hide
Query:  MLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIMK------------------------GIKISSKVGAHD
        MLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDI+K                        GIKISSKVGAHD
Subjt:  MLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIMK------------------------GIKISSKVGAHD

Query:  VDDLSSQFSSTFMLDEELEIKQKSIKKDDLTSNGR
        VDDLSSQFSSTFMLDEELEIKQKSIKKDDLTSNGR
Subjt:  VDDLSSQFSSTFMLDEELEIKQKSIKKDDLTSNGR

A0A5D3DDZ4 La-related protein 1A isoform X19.2e-4363.74Show/hide
Query:  LDGSRSTPNNNLETAKDPKIIQWMLTLH-QIDSKSMLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIM--
        LD   S+ N  ++  K  K   W   +    DSKS LN+ETSSNPVDES NS VDENASDGSRVLASNDNIKSS+LQGCS EQFSSRD+ EVANLDI+  
Subjt:  LDGSRSTPNNNLETAKDPKIIQWMLTLH-QIDSKSMLNIETSSNPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSWEQFSSRDNQEVANLDIM--

Query:  --------KGIKISSKVGAHDVDDLSSQFSSTFMLDEELEIKQKSIKKDDLTSNGRVGSQPIDHLSKNSKE
                +GIKISS VG HD DDLSSQFSSTFMLDEELEI+QK+IKKDDLTSNGR+  +  D ++ N ++
Subjt:  --------KGIKISSKVGAHDVDDLSSQFSSTFMLDEELEIKQKSIKKDDLTSNGRVGSQPIDHLSKNSKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G20440.1 Ypt/Rab-GAP domain of gyp1p superfamily protein1.3e-0429.67Show/hide
Query:  EYATRKEDCQQMFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHQI
        +Y   KE+C++M  V+ SG+Y+T  V+ E+  PI +  V      ++G  V                       T  D +++QWML+LHQI
Subjt:  EYATRKEDCQQMFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHQI

AT2G20440.2 Ypt/Rab-GAP domain of gyp1p superfamily protein1.3e-0429.67Show/hide
Query:  EYATRKEDCQQMFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHQI
        +Y   KE+C++M  V+ SG+Y+T  V+ E+  PI +  V      ++G  V                       T  D +++QWML+LHQI
Subjt:  EYATRKEDCQQMFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHQI

AT4G27100.1 Ypt/Rab-GAP domain of gyp1p superfamily protein6.8e-1446.24Show/hide
Query:  QIEYATRKEDCQQMFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHQI
        +++YA+ KE+C+QMF V+ SGR+ TAPVI+E+ QP +DPLVL EIN                N +GS            D KIIQW+LTLHQI
Subjt:  QIEYATRKEDCQQMFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHQI

AT4G27100.2 Ypt/Rab-GAP domain of gyp1p superfamily protein6.8e-1446.24Show/hide
Query:  QIEYATRKEDCQQMFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHQI
        +++YA+ KE+C+QMF V+ SGR+ TAPVI+E+ QP +DPLVL EIN                N +GS            D KIIQW+LTLHQI
Subjt:  QIEYATRKEDCQQMFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHQI

AT5G54780.1 Ypt/Rab-GAP domain of gyp1p superfamily protein1.1e-1140.86Show/hide
Query:  QIEYATRKEDCQQMFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHQI
        +++YA+ KE+C+QMF V+ SG +ITAPVI+   +PI+DP+VL E               T+   +GS    +       D K+IQW+LTLHQI
Subjt:  QIEYATRKEDCQQMFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHQI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCTCTCTTCTCTAAATTTCTCTCCGACCTTCCCTCACGCCTCTCTATCTCTCCACTGCCAACGCCTGCGACTGAGCGCCGACCAGACAAATTTCAAGACCATTGC
TTCTGACTCTCGCCGCGCGGGCCCGTTGCTAGTCTCCGGTCGTTGTCCACTGTTTTCGACCTTCCCTCATGCCTCTCTATCTCTCCACCGCCAACGCCTGCAACTGAGTG
CCAACCAGACAGATTTCAAGACCATCGCTTTCGATTCTCATTGCCAGATTGAGTATGCCACTCGGAAGGAAGATTGTCAACAAATGTTTACCGTTGTTGAAAGTGGTAGA
TACATCACAGCTCCTGTAATCTCAGAGGATGATCAGCCCATTCATGATCCGCTTGTACTCTTGGAAATAAATCCGGACAAAGGTCCAACTGTACCTCAAGATACTGGCCC
CACCGATGGCAATCTGGATGGTTCACGATCAACTCCTAATAATAATTTGGAAACTGCGAAGGATCCGAAAATAATTCAGTGGATGCTTACTTTACATCAGATAGACTCTA
AATCAATGTTAAACATTGAGACCTCATCCAATCCAGTGGATGAAAGTACCAACTCTTTGGTGGACGAGAATGCTTCAGATGGTTCTAGGGTGCTTGCATCGAATGATAAT
ATCAAATCTTCACTGCTTCAAGGTTGTTCTTGGGAGCAGTTCTCAAGCAGGGACAACCAAGAAGTAGCTAATCTAGACATAATGAAAGGCATAAAGATTTCATCAAAGGT
TGGTGCACATGATGTTGATGACCTTTCAAGCCAATTTTCAAGCACTTTTATGCTTGATGAAGAGCTAGAGATCAAACAAAAATCGATAAAGAAAGATGATTTAACTTCAA
ACGGAAGAGTTGGTTCTCAACCAATTGATCATTTGTCAAAGAATAGTAAAGAAGACCTAATGGGGGCATCACCATACGTGAAGGATAGTTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCTCTCTTCTCTAAATTTCTCTCCGACCTTCCCTCACGCCTCTCTATCTCTCCACTGCCAACGCCTGCGACTGAGCGCCGACCAGACAAATTTCAAGACCATTGC
TTCTGACTCTCGCCGCGCGGGCCCGTTGCTAGTCTCCGGTCGTTGTCCACTGTTTTCGACCTTCCCTCATGCCTCTCTATCTCTCCACCGCCAACGCCTGCAACTGAGTG
CCAACCAGACAGATTTCAAGACCATCGCTTTCGATTCTCATTGCCAGATTGAGTATGCCACTCGGAAGGAAGATTGTCAACAAATGTTTACCGTTGTTGAAAGTGGTAGA
TACATCACAGCTCCTGTAATCTCAGAGGATGATCAGCCCATTCATGATCCGCTTGTACTCTTGGAAATAAATCCGGACAAAGGTCCAACTGTACCTCAAGATACTGGCCC
CACCGATGGCAATCTGGATGGTTCACGATCAACTCCTAATAATAATTTGGAAACTGCGAAGGATCCGAAAATAATTCAGTGGATGCTTACTTTACATCAGATAGACTCTA
AATCAATGTTAAACATTGAGACCTCATCCAATCCAGTGGATGAAAGTACCAACTCTTTGGTGGACGAGAATGCTTCAGATGGTTCTAGGGTGCTTGCATCGAATGATAAT
ATCAAATCTTCACTGCTTCAAGGTTGTTCTTGGGAGCAGTTCTCAAGCAGGGACAACCAAGAAGTAGCTAATCTAGACATAATGAAAGGCATAAAGATTTCATCAAAGGT
TGGTGCACATGATGTTGATGACCTTTCAAGCCAATTTTCAAGCACTTTTATGCTTGATGAAGAGCTAGAGATCAAACAAAAATCGATAAAGAAAGATGATTTAACTTCAA
ACGGAAGAGTTGGTTCTCAACCAATTGATCATTTGTCAAAGAATAGTAAAGAAGACCTAATGGGGGCATCACCATACGTGAAGGATAGTTCGTGA
Protein sequenceShow/hide protein sequence
MLLSSLNFSPTFPHASLSLHCQRLRLSADQTNFKTIASDSRRAGPLLVSGRCPLFSTFPHASLSLHRQRLQLSANQTDFKTIAFDSHCQIEYATRKEDCQQMFTVVESGR
YITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHQIDSKSMLNIETSSNPVDESTNSLVDENASDGSRVLASNDN
IKSSLLQGCSWEQFSSRDNQEVANLDIMKGIKISSKVGAHDVDDLSSQFSSTFMLDEELEIKQKSIKKDDLTSNGRVGSQPIDHLSKNSKEDLMGASPYVKDSS