; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0000043 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0000043
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionCST complex subunit STN1
Genome locationchr05:7878391..7881109
RNA-Seq ExpressionPay0000043
SyntenyPay0000043
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
InterPro domainsIPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340 - Nucleic acid-binding, OB-fold
IPR040260 - Replication factor A protein-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057432.1 CST complex subunit STN1 [Cucumis melo var. makuwa]7.1e-82100Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
        MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL

Query:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR
        ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR
Subjt:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR

XP_004145384.1 CST complex subunit STN1 [Cucumis sativus]1.3e-7896.77Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
        MNQR+RFSFSLYQTHVKLL FDLNSLNQ SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH DVRIL
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL

Query:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR
         DMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR
Subjt:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR

XP_008449339.1 PREDICTED: CST complex subunit STN1 [Cucumis melo]7.1e-82100Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
        MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL

Query:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR
        ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR
Subjt:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR

XP_038887265.1 CST complex subunit STN1 isoform X1 [Benincasa hispida]1.0e-6784.28Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQ----NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPD
        MNQRQR   SLY TH+KLLGFD+NSLNQ    +SSSD+VSFSR GYAVSC+EIVGVVV  DLKPNRFLKFSVDDGTACVGCILWLNHLTS YFASRH PD
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQ----NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPD

Query:  VRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR
        VRI+ ++ATHFAAQIRVGIV RVRGKLSSYRG+VQITVSDVVVE+DPNAEILHWLDSMR
Subjt:  VRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR

XP_038887266.1 CST complex subunit STN1 isoform X2 [Benincasa hispida]3.8e-6784.18Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQ----NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPD
        MNQRQR   SLY TH+KLLGFD+NSLNQ    +SSSD+VSFSR GYAVSC+EIVGVVV  DLKPNRFLKFSVDDGTACVGCILWLNHLTS YFASRH PD
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQ----NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPD

Query:  VRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSM
        VRI+ ++ATHFAAQIRVGIV RVRGKLSSYRG+VQITVSDVVVE+DPNAEILHWLDSM
Subjt:  VRILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSM

TrEMBL top hitse value%identityAlignment
A0A0A0LNV0 OB domain-containing protein6.1e-7996.77Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
        MNQR+RFSFSLYQTHVKLL FDLNSLNQ SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH DVRIL
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL

Query:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR
         DMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR
Subjt:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR

A0A1S3BLT5 CST complex subunit STN13.5e-82100Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
        MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL

Query:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR
        ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR
Subjt:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR

A0A5D3E3H2 CST complex subunit STN13.5e-82100Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
        MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL

Query:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR
        ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR
Subjt:  ADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR

A0A6J1HFA9 LOW QUALITY PROTEIN: CST complex subunit STN17.7e-6681.01Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDV
        MNQ++  +FSLY TH+KLLGFDLNSL Q   +SSSD+VSFSR+GYAVSC EIVGVVVFRDLKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH PDV
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDV

Query:  RILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR
        RI+ +MATHFAAQIRVGIV RVRG++SSYRG+VQ+TVSDVVVE+DPNAEILHWLD MR
Subjt:  RILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR

A0A6J1HUX0 CST complex subunit STN11.5e-6480.89Show/hide
Query:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDV
        MNQ++  +FSLY TH+KLLGFDLNSL Q   +SSSD+VSFSR+G+AVSC EIVGVVV RDLKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH PDV
Subjt:  MNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDV

Query:  RILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSM
        RI+ +MATHFAAQIRVGIV RVRGK+SSYRG+VQITVSDVVVE+DPNAEILHWLD M
Subjt:  RILADMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSM

SwissProt top hitse value%identityAlignment
Q08DB2 CST complex subunit STN19.6e-0526.62Show/hide
Query:  LYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILW--LNHLTSSYFASRHHPDVRILA-------
        ++    KL   D+  L ++     V F   G+ +   +I+G V+    K + F  + VDD T  + CI W  LN+  SS  ++   P  R L+       
Subjt:  LYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILW--LNHLTSSYFASRHHPDVRILA-------

Query:  -DMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDP--NAEILHWLD
                A++ +G ++RVRG +  +RG  +I  +     DDP  N +I   L+
Subjt:  -DMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDP--NAEILHWLD

Q9LMK5 CST complex subunit STN13.1e-3555.1Show/hide
Query:  SLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFA
        SL  TH KL+  D+  L Q S ++S SFS  G A VS  EIVG +V RDL P +FLKF VDDGT CV C++WLN LTSSYF+      + +LA  A   A
Subjt:  SLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFA

Query:  AQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR
        AQIR+G V RVRG++ SYRG++QIT +  V E DPNAEILHWL+ ++
Subjt:  AQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR

Arabidopsis top hitse value%identityAlignment
AT1G07130.1 Nucleic acid-binding, OB-fold-like protein2.2e-3655.1Show/hide
Query:  SLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFA
        SL  TH KL+  D+  L Q S ++S SFS  G A VS  EIVG +V RDL P +FLKF VDDGT CV C++WLN LTSSYF+      + +LA  A   A
Subjt:  SLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYA-VSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFA

Query:  AQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR
        AQIR+G V RVRG++ SYRG++QIT +  V E DPNAEILHWL+ ++
Subjt:  AQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR

AT2G24490.1 replicon protein A26.4e-0424.39Show/hide
Query:  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGM
        SS +       G +++   +VG+V  +D      ++F++DDGT  + C  W+    S  F +R                  +R G  VR+ G L +++G 
Subjt:  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGM

Query:  VQITVSDVVVEDDPNAEILHWLD
         Q+ V  V    D N    H+++
Subjt:  VQITVSDVVVEDDPNAEILHWLD

AT2G24490.2 replicon protein A26.4e-0424.39Show/hide
Query:  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGM
        SS +       G +++   +VG+V  +D      ++F++DDGT  + C  W+    S  F +R                  +R G  VR+ G L +++G 
Subjt:  SSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVRGKLSSYRGM

Query:  VQITVSDVVVEDDPNAEILHWLD
         Q+ V  V    D N    H+++
Subjt:  VQITVSDVVVEDDPNAEILHWLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCAACGGCAACGTTTCTCGTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGGTTTCGACCTAAATTCCCTCAACCAAAATTCCTCTTCTGATTCAGTTTCTTT
CTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTCTTCCGTGACCTGAAGCCTAACAGGTTTCTCAAATTCTCCGTTGACGATGGTACTGCAT
GTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCCAGATGTTCGAATTCTGGCAGATATGGCGACCCATTTCGCAGCCCAA
ATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAAT
TCTGCATTGGTTGGATTCTATGAGGGGAGATTATCGGTGGGATGGAGGCGGTTTTGTACAAAAATTGCCACCGAAAACCGACTCAGTGGATTTACAAGAGGAGAGACCTA
CCATCGACTCATCAACAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACCAACGGCAACGTTTCTCGTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGGTTTCGACCTAAATTCCCTCAACCAAAATTCCTCTTCTGATTCAGTTTCTTT
CTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTCTTCCGTGACCTGAAGCCTAACAGGTTTCTCAAATTCTCCGTTGACGATGGTACTGCAT
GTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCCAGATGTTCGAATTCTGGCAGATATGGCGACCCATTTCGCAGCCCAA
ATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAAT
TCTGCATTGGTTGGATTCTATGAGGGGAGATTATCGGTGGGATGGAGGCGGTTTTGTACAAAAATTGCCACCGAAAACCGACTCAGTGGATTTACAAGAGGAGAGACCTA
CCATCGACTCATCAACAGTTTGA
Protein sequenceShow/hide protein sequence
MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQ
IRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRGDYRWDGGGFVQKLPPKTDSVDLQEERPTIDSSTV