CuGenDBv2

Gene ID	Pay0000064
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Coatomer, beta' subunit
Genome location	chr04:12281985..12283794
RNA-Seq Expression	Pay0000064
Synteny	Pay0000064
Gene Ontology terms	GO:0006886 - intracellular protein transport (biological process) GO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process) GO:0006890 - retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (biological process) GO:0006891 - intra-Golgi vesicle-mediated transport (biological process) GO:0000139 - Golgi membrane (cellular component) GO:0030126 - COPI vesicle coat (cellular component) GO:0005198 - structural molecule activity (molecular function)
InterPro domains	IPR006692 - Coatomer, WD associated region

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004149846.1 coatomer subunit beta'-2 isoform X1 [Cucumis sativus]

3.4e-47

99.02

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

XP_008447490.1 PREDICTED: coatomer subunit beta'-2-like isoform X1 [Cucumis melo]

3.4e-47

99.02

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

XP_008447491.1 PREDICTED: coatomer subunit beta'-2-like isoform X2 [Cucumis melo]

3.4e-47

99.02

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

XP_011651524.1 coatomer subunit beta'-2 isoform X2 [Cucumis sativus]

3.4e-47

99.02

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

XP_016899939.1 PREDICTED: coatomer subunit beta'-2-like [Cucumis melo]

6.5e-54

98.25

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKEDLNEQVTILSW
        SKEDLNEQ TILSW
Subjt:  SKEDLNEQVTILSW

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L8I6 Coatomer subunit beta'

1.7e-47

99.02

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

A0A1S3BGZ7 Coatomer subunit beta'

1.7e-47

99.02

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

A0A1S3BIG1 Coatomer subunit beta'

1.7e-47

99.02

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

A0A1S4DVC7 coatomer subunit beta'-2-like

3.1e-54

98.25

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKEDLNEQVTILSW
        SKEDLNEQ TILSW
Subjt:  SKEDLNEQVTILSW

A0A5A7UAX5 Coatomer subunit beta'-2-like isoform X1

1.7e-47

99.02

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

SwissProt top hits

e value

%identity

Alignment

Q5VQ78 Coatomer subunit beta'-1

7.7e-42

84.31

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKLDMAEECL  A D SGLLLLYSSLGDA+GI +LA+ AKE GKNNVAFLCLF+LGKLEDC+QLL++SNRIPEAALMARSYLPSKVSEIVAIWR DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

Q6H8D5 Coatomer subunit beta'-2

8.5e-41

78.43

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKLDMAEECL +A+D SGLLLLYSSLGDA+G+++L ++AKEQGKNNVAFLC F+LGKLE+CLQLL+ESNRIPEAALM+RSYLPSKV EIV +W+KDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
         K
Subjt:  SK

Q8L828 Coatomer subunit beta'-3

1.1e-43

85.29

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKL +AE+C+KYA+D SGLLLLYSSLGDA+G+S+LA LAKEQGKNNVAFLCLF LG+LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WR+DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

Q9C827 Coatomer subunit beta'-2

1.1e-45

89.22

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKL MAEEC+KYA+D SGLLLLYSSLGDA+G+++LATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

Q9CAA0 Coatomer subunit beta'-1

7.7e-42

82.35

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKLDMAEEC+++A+D SGLLLLYSSLGDA G+ +LA LAKEQGKNNVAFLCLF+LG++EDCL LLVESNRIPEAALMARSYLPSKVSEIVA+WR DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
        +K
Subjt:  SK

Arabidopsis top hits

e value

%identity

Alignment

AT1G52360.1 Coatomer, beta' subunit

8.1e-47

89.22

Show/hide

Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKL MAEEC+KYA+D SGLLLLYSSLGDA+G+++LATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

AT1G52360.2 Coatomer, beta' subunit

8.1e-47

89.22

Show/hide

Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKL MAEEC+KYA+D SGLLLLYSSLGDA+G+++LATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

AT3G15980.1 Coatomer, beta' subunit

7.6e-45

85.29

Show/hide

Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKL +AE+C+KYA+D SGLLLLYSSLGDA+G+S+LA LAKEQGKNNVAFLCLF LG+LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WR+DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

AT3G15980.2 Coatomer, beta' subunit

7.6e-45

85.29

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKL +AE+C+KYA+D SGLLLLYSSLGDA+G+S+LA LAKEQGKNNVAFLCLF LG+LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WR+DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

AT3G15980.3 Coatomer, beta' subunit

7.6e-45

85.29

Show/hide

Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKL +AE+C+KYA+D SGLLLLYSSLGDA+G+S+LA LAKEQGKNNVAFLCLF LG+LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WR+DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

Sequences

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CDS sequence

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ATGTCGATTGGAAAGTTGGACATGGCCGAGGAATGTTTGAAGTATGCTGTAGATTATAGTGGTTTGTTATTGTTGTACTCTTCCCTAGGAGACGCTCAAGGCATATCACA
ACTTGCAACCCTTGCCAAGGAGCAAGGAAAGAACAACGTTGCATTCCTTTGTTTATTTGTGTTGGGTAAATTGGAAGACTGCCTTCAGTTGTTAGTAGAAAGTAATCGGA
TTCCAGAAGCTGCTTTGATGGCTCGATCTTATCTTCCAAGCAAGGTATCAGAGATAGTAGCAATTTGGAGGAAAGACCTGAGTAAGGAAGACTTGAATGAACAAGTTACA
ATATTATCTTGGTAA

mRNA sequence

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Protein sequence

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MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSKEDLNEQVT
ILSW

Pay0000064 (gene) of Melon (Payzawat) v1 genome