CuGenDBv2

Gene ID	Pay0000312
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr06:11328246..11328734
RNA-Seq Expression	Pay0000312
Synteny	Pay0000312
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0055085 - transmembrane transport (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domains	IPR025314 - Domain of unknown function DUF4219

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037127.1 gag-pol polyprotein [Cucumis melo var. makuwa]

1.2e-74

99.34

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Query:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN
        MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN
Subjt:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN

Query:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLL
        YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIK+YSVRLLDIANQIRLL
Subjt:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLL

KAA0064094.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.0e-72

90.12

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Query:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN
        MDAI SSSF+SISP IFDGDNYQVW VRMEAYMEALDIWEAVEEDYEIPALP+NPTMAQIK QKEKKTKK KAKACLFAAVSSTIFTRI+TLRSAYEIWN
Subjt:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN

Query:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLLGFEFKDSRIV
        YLKS+Y GDERI+GMRVLNLIREFELQKMKE +SIK+YSVRLLDIANQIRLLG  FKDSRIV
Subjt:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLLGFEFKDSRIV

TYJ95793.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.0e-72

90.12

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Query:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN
        MDAI SSSF+SISP IFDGDNYQVW VRMEAYMEALDIWEAVEEDYEIPALP+NPTMAQIK QKEKKTKK KAKACLFAAVSSTIFTRI+TLRSAYEIWN
Subjt:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN

Query:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLLGFEFKDSRIV
        YLKS+Y GDERI+GMRVLNLIREFELQKMKE +SIK+YSVRLLDIANQIRLLG  FKDSRIV
Subjt:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLLGFEFKDSRIV

TYK27376.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.0e-72

90.12

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Query:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN
        MDAI SSSF+SISP IFDGDNYQVW VRMEAYMEALDIWEAVEEDYEIPALP+NPTMAQIK QKEKKTKK KAKACLFAAVSSTIFTRI+TLRSAYEIWN
Subjt:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN

Query:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLLGFEFKDSRIV
        YLKS+Y GDERI+GMRVLNLIREFELQKMKE +SIK+YSVRLLDIANQIRLLG  FKDSRIV
Subjt:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLLGFEFKDSRIV

XP_008456224.1 PREDICTED: uncharacterized protein LOC103496228 [Cucumis melo]

8.8e-81

99.38

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Query:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN
        MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN
Subjt:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN

Query:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLLGFEFKDSRIV
        YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIK+YSVRLLDIANQIRLLGFEFKDSRIV
Subjt:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLLGFEFKDSRIV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C2Q5 uncharacterized protein LOC103496228

4.3e-81

99.38

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Query:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN
        MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN
Subjt:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN

Query:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLLGFEFKDSRIV
        YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIK+YSVRLLDIANQIRLLGFEFKDSRIV
Subjt:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLLGFEFKDSRIV

A0A5A7T6E3 Gag-pol polyprotein

6.0e-75

99.34

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Query:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN
        MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN
Subjt:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN

Query:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLL
        YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIK+YSVRLLDIANQIRLL
Subjt:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLL

A0A5D3BL45 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.5e-73

90.12

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Query:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN
        MDAI SSSF+SISP IFDGDNYQVW VRMEAYMEALDIWEAVEEDYEIPALP+NPTMAQIK QKEKKTKK KAKACLFAAVSSTIFTRI+TLRSAYEIWN
Subjt:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN

Query:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLLGFEFKDSRIV
        YLKS+Y GDERI+GMRVLNLIREFELQKMKE +SIK+YSVRLLDIANQIRLLG  FKDSRIV
Subjt:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLLGFEFKDSRIV

A0A5D3DMJ1 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.5e-73

90.12

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Query:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN
        MDAI SSSF+SISP IFDGDNYQVW VRMEAYMEALDIWEAVEEDYEIPALP+NPTMAQIK QKEKKTKK KAKACLFAAVSSTIFTRI+TLRSAYEIWN
Subjt:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN

Query:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLLGFEFKDSRIV
        YLKS+Y GDERI+GMRVLNLIREFELQKMKE +SIK+YSVRLLDIANQIRLLG  FKDSRIV
Subjt:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLLGFEFKDSRIV

A0A5D3E2V7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.5e-73

90.12

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Query:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN
        MDAI SSSF+SISP IFDGDNYQVW VRMEAYMEALDIWEAVEEDYEIPALP+NPTMAQIK QKEKKTKK KAKACLFAAVSSTIFTRI+TLRSAYEIWN
Subjt:  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWN

Query:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLLGFEFKDSRIV
        YLKS+Y GDERI+GMRVLNLIREFELQKMKE +SIK+YSVRLLDIANQIRLLG  FKDSRIV
Subjt:  YLKSKYVGDERIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLLGFEFKDSRIV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGACGCCATAGCAAGTTCCAGTTTCTCTTCCATTTCTCCATCGATATTTGATGGAGACAACTACCAAGTTTGGACAGTTCGTATGGAAGCTTATATGGAAGCTTTGGA
TATTTGGGAAGCAGTGGAAGAGGATTATGAAATTCCTGCTCTTCCAAACAATCCTACCATGGCACAAATCAAAGTGCAAAAGGAGAAGAAGACAAAGAAAATCAAGGCAA
AGGCATGTCTGTTTGCTGCAGTCTCATCTACTATCTTCACTAGAATTTTGACTTTGAGATCAGCATATGAGATATGGAATTATCTCAAGTCAAAGTATGTGGGAGATGAA
AGAATCAGAGGAATGCGTGTGCTAAACTTGATTCGAGAATTCGAGTTGCAGAAGATGAAGGAAATAAAATCAATTAAAAAGTATTCTGTTAGGTTATTGGACATTGCAAA
CCAAATCAGATTACTTGGTTTTGAGTTCAAGGACTCAAGAATTGTATAA

mRNA sequence

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Protein sequence

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MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQIKVQKEKKTKKIKAKACLFAAVSSTIFTRILTLRSAYEIWNYLKSKYVGDE
RIRGMRVLNLIREFELQKMKEIKSIKKYSVRLLDIANQIRLLGFEFKDSRIV

Pay0000312 (gene) of Melon (Payzawat) v1 genome