CuGenDBv2

Gene ID	Pay0000328
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	pentatricopeptide repeat-containing protein MRL1, chloroplastic
Genome location	chr11:2920195..2925763
RNA-Seq Expression	Pay0000328
Synteny	Pay0000328
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR002885 - Pentatricopeptide repeat IPR011990 - Tetratricopeptide-like helical domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008457640.1 PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Cucumis melo]

2.3e-21

41.24

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Query:  VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM
        V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+  F      +   L  FNM    L    +S  +    + +
Subjt:  VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM

Query:  VNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC
        V       + KA+ K +TT+  T      +   ++VFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK    DRVVF   +  C
Subjt:  VNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC

XP_022987004.1 pentatricopeptide repeat-containing protein MRL1, chloroplastic-like isoform X1 [Cucurbita maxima]

1.3e-19

40.21

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Query:  VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM
        V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+  F          L  FNM    L    +S  +  S + +
Subjt:  VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM

Query:  VNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC
        +       + +A+ K +TT+  T      +   ++VFHRMVN GVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK    DRVVF   +  C
Subjt:  VNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC

XP_023512947.1 pentatricopeptide repeat-containing protein MRL1, chloroplastic [Cucurbita pepo subsp. pepo]

9.7e-20

40.21

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Query:  VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM
        V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+  F          L  FNM    L    +S  +  S + +
Subjt:  VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM

Query:  VNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC
        +       + +A+ K +TT+  T      +   ++VFHRMVN GVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK    DRVVF   +  C
Subjt:  VNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC

XP_038901395.1 pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 [Benincasa hispida]

1.2e-20

42.21

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Query:  VAYKNLHGHDWSS--------------GILQE------LDVDR--RNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM
        V YKNLH   + S               ILQ+      LD+++      F+IC+  K V+  F          L  FNM    +   +SS  + R+    
Subjt:  VAYKNLHGHDWSS--------------GILQE------LDVDR--RNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM

Query:  VNYFHSVRL-----SKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC
           F  VRL      KA+ K +TT+  T      +   ++VFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK    DRVVF   +  C
Subjt:  VNYFHSVRL-----SKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC

XP_038901397.1 pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X2 [Benincasa hispida]

1.2e-20

42.21

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Query:  VAYKNLHGHDWSS--------------GILQE------LDVDR--RNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM
        V YKNLH   + S               ILQ+      LD+++      F+IC+  K V+  F          L  FNM    +   +SS  + R+    
Subjt:  VAYKNLHGHDWSS--------------GILQE------LDVDR--RNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM

Query:  VNYFHSVRL-----SKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC
           F  VRL      KA+ K +TT+  T      +   ++VFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK    DRVVF   +  C
Subjt:  VNYFHSVRL-----SKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LLH2 Uncharacterized protein

8.1e-20

44.23

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Query:  LDVDR--RNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFH
        LD+++      F+IC+  K V+  F      +   L  FNM    L    +S  +    + +V       + KA+ K +TT+  T      +   ++VFH
Subjt:  LDVDR--RNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFH

Query:  RMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC
        RMVNAGVEPNVHTYGALIDGCARA QVAKAFGVYGIMRSK    DRVVF   +  C
Subjt:  RMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC

A0A1S3C5X8 pentatricopeptide repeat-containing protein MRL1, chloroplastic

1.1e-21

41.24

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Query:  VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM
        V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+  F      +   L  FNM    L    +S  +    + +
Subjt:  VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM

Query:  VNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC
        V       + KA+ K +TT+  T      +   ++VFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK    DRVVF   +  C
Subjt:  VNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC

A0A5D3BKV6 Pentatricopeptide repeat-containing protein MRL1

1.1e-21

41.24

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Query:  VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM
        V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+  F      +   L  FNM    L    +S  +    + +
Subjt:  VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM

Query:  VNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC
        V       + KA+ K +TT+  T      +   ++VFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK    DRVVF   +  C
Subjt:  VNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC

A0A6J1JFL7 pentatricopeptide repeat-containing protein MRL1, chloroplastic-like isoform X2

6.2e-20

40.21

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Query:  VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM
        V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+  F          L  FNM    L    +S  +  S + +
Subjt:  VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM

Query:  VNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC
        +       + +A+ K +TT+  T      +   ++VFHRMVN GVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK    DRVVF   +  C
Subjt:  VNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC

A0A6J1JHM6 pentatricopeptide repeat-containing protein MRL1, chloroplastic-like isoform X1

6.2e-20

40.21

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Query:  VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM
        V YKNLH   + S               ILQ+++ +     N I+H     IC+  K V+  F          L  FNM    L    +S  +  S + +
Subjt:  VAYKNLHGHDWSS--------------GILQELDVD---RRNNIFH-----ICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGM

Query:  VNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC
        +       + +A+ K +TT+  T      +   ++VFHRMVN GVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK    DRVVF   +  C
Subjt:  VNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC

SwissProt top hits

e value

%identity

Alignment

Q0WLC6 Pentatricopeptide repeat-containing protein MRL1, chloroplastic

2.1e-17

37.18

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Query:  LDVDR--RNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFH
        LD+D+    + F  C++ + V+  F          +  FNM    L    +S  ++    G++       ++ A+ K +TT+  +      +   ++VFH
Subjt:  LDVDR--RNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFH

Query:  RMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC
        +M N+GVE N+HT+GALIDGCARAGQVAKAFG YGI+RSK    DRVVF   +  C
Subjt:  RMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC

Arabidopsis top hits

e value

%identity

Alignment

AT1G20300.1 Pentatricopeptide repeat (PPR) superfamily protein

2.7e-04

45.65

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Query:  ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIM
        IS   +VF  M  AG+EPNV+TY  +ID   R GQ+++A  V+  M
Subjt:  ISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIM

AT3G07290.1 Pentatricopeptide repeat (PPR) superfamily protein

2.1e-04

45.28

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Query:  LISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKDRV
        LI   + +F  M+  G +PNVHTY  LIDG  R G++ +A GV   M  KDR+
Subjt:  LISTWWQVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKDRV

AT4G34830.1 Pentatricopeptide repeat (PPR) superfamily protein

1.5e-18

37.18

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Query:  LDVDR--RNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFH
        LD+D+    + F  C++ + V+  F          +  FNM    L    +S  ++    G++       ++ A+ K +TT+  +      +   ++VFH
Subjt:  LDVDR--RNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTVTLTL-----ISTWWQVFH

Query:  RMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC
        +M N+GVE N+HT+GALIDGCARAGQVAKAFG YGI+RSK    DRVVF   +  C
Subjt:  RMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSK----DRVVFKWHLHHC

Sequences

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CDS sequence

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ATGCTTTGTCTTTCAACTTGGAATCTTACAACTAATCCTTTGAACATTGTTATTATTCTGTGTGGATATATATTTTTGTCCAGATCACCATCGTTGCCCCTATCT
CCAAAGCTTCTTATTCAACTGATAAGCATCAACTCTTTATGGTCATGTATGGTCTTTAGAGGAATTCACATGCGGACATTTTTAGAGCAGGTAACATTGTCCTTG
GATGATCAGTCGTTCCAGCCTCTTATTTTTGGCCATAATGACTACTTACGATTGAATGATCTCATGGTAAATCAATCTATCTGTGCATGGGTAGCATACAAAAAT
CTTCATGGTCATGACTGGTCATCAGGAATACTTCAAGAATTGGATGTAGACAGAAGAAATAATATTTTTCATATTTGCGAAGAGAGTAAACTGGTTCGAAGCCTT
TTCAGTACACCCACTTATTCAAGAACCCACAAATTAGACGGTTTCAATATGGCTTGCTATGGTCTGTTTCAAGGTTCGTCAAGTCTGGGAAATGTAAGGTCATAT
TATGGCATGGTAAATTATTTCCACAGTGTGAGGCTTTCCAAGGCTGAATGGAAAAGATTCACAACTGTAACACTTACTTTAATCTCAACATGGTGGCAAGTATTC
CACCGAATGGTTAATGCTGGTGTGGAACCTAACGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGCAGGTCAAGTGGCAAAGGCATTTGGCGTGTAT
GGAATAATGAGGTCAAAGGACAGAGTTGTATTCAAATGGCACTTACACCATTGTCAGGGTTATCAGCAAGTAGAAGTGTACAAGAGGATCAATGGATTTATAAGG
ATTAGACACCAGTTTACACAGATTTTCATTTTTCTCAGTGCATTAATAGATGTTGCCATACCATGGCTGTCGAATGCGATCTCCTTTAAATCTTAG

mRNA sequence

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Protein sequence

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MLCLSTWNLTTNPLNIVIILCGYIFLSRSPSLPLSPKLLIQLISINSLWSCMVFRGIHMRTFLEQVTLSLDDQSFQPLIFGHNDYLRLNDLMVNQSICAWVAYKN
LHGHDWSSGILQELDVDRRNNIFHICEESKLVRSLFSTPTYSRTHKLDGFNMACYGLFQGSSSLGNVRSYYGMVNYFHSVRLSKAEWKRFTTVTLTLISTWWQVF
HRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKDRVVFKWHLHHCQGYQQVEVYKRINGFIRIRHQFTQIFIFLSALIDVAIPWLSNAISFKS

Pay0000328 (gene) of Melon (Payzawat) v1 genome