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Pay0000705 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0000705
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionPre-mRNA-splicing factor CWC25-like protein
Genome locationchr08:19867616..19883754
RNA-Seq ExpressionPay0000705
SyntenyPay0000705
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005684 - U2-type spliceosomal complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034965.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa]7.9e-3396.2Show/hide
Query:  IGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSSKD
        +GEPICMTLVVA GNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIA TATEPSSSKD
Subjt:  IGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSSKD

KAA0037864.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa]6.7e-3296.15Show/hide
Query:  IGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSSK
        +GEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHE LNLLYELGLEVGKASNSDGFKSLETLPSSTIA TATEPSSSK
Subjt:  IGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSSK

TYK21842.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa]7.1e-3498.73Show/hide
Query:  IGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSSKD
        +GEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSSKD
Subjt:  IGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSSKD

XP_008462005.1 PREDICTED: uncharacterized protein LOC103500480 isoform X1 [Cucumis melo]1.3e-3277.36Show/hide
Query:  RGNKRLGPPSVFN--WLTVSEEDIGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSS
        R +K L  P  F+     VS ED+GEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLN LYELGL+VGKASN DGFKSLETL SSTIA TATEPSSS
Subjt:  RGNKRLGPPSVFN--WLTVSEEDIGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSS

Query:  KDVFFM
        K   F+
Subjt:  KDVFFM

XP_016902821.1 PREDICTED: uncharacterized protein LOC103500480 isoform X2 [Cucumis melo]1.8e-3280.2Show/hide
Query:  RGNKRLGPPSVFN--WLTVSEEDIGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSS
        R +K L  P  F+     VS ED+GEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLN LYELGL+VGKASN DGFKSLETL SSTIA TATEPSSS
Subjt:  RGNKRLGPPSVFN--WLTVSEEDIGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSS

Query:  K
        K
Subjt:  K

TrEMBL top hitse value%identityAlignment
A0A1S3CFU5 uncharacterized protein LOC103500480 isoform X16.5e-3377.36Show/hide
Query:  RGNKRLGPPSVFN--WLTVSEEDIGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSS
        R +K L  P  F+     VS ED+GEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLN LYELGL+VGKASN DGFKSLETL SSTIA TATEPSSS
Subjt:  RGNKRLGPPSVFN--WLTVSEEDIGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSS

Query:  KDVFFM
        K   F+
Subjt:  KDVFFM

A0A1S4E3L4 uncharacterized protein LOC103500480 isoform X28.5e-3380.2Show/hide
Query:  RGNKRLGPPSVFN--WLTVSEEDIGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSS
        R +K L  P  F+     VS ED+GEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLN LYELGL+VGKASN DGFKSLETL SSTIA TATEPSSS
Subjt:  RGNKRLGPPSVFN--WLTVSEEDIGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSS

Query:  K
        K
Subjt:  K

A0A5A7T0H4 Pre-mRNA-splicing factor CWC25-like protein3.8e-3396.2Show/hide
Query:  IGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSSKD
        +GEPICMTLVVA GNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIA TATEPSSSKD
Subjt:  IGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSSKD

A0A5D3CF18 Pre-mRNA-splicing factor CWC25-like protein3.2e-3296.15Show/hide
Query:  IGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSSK
        +GEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHE LNLLYELGLEVGKASNSDGFKSLETLPSSTIA TATEPSSSK
Subjt:  IGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSSK

A0A5D3DE30 Pre-mRNA-splicing factor CWC25-like protein3.4e-3498.73Show/hide
Query:  IGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSSKD
        +GEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSSKD
Subjt:  IGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSLETLPSSTIATTATEPSSSKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAAATTTAAAACATGTGTGAAGCAAGAAAAAACCAGTGAAGAGAAAGAGGACTTAGATTTTGTTGAGTATTGTGAAGAAGATGATCGTGGAAATAAGAGATTGGG
GCCACCAAGTGTGTTTAATTGGTTGACTGTTTCAGAAGAAGATATAGGAGAACCGATTTGCATGACTTTGGTCGTTGCCGCCGGCAACAAAATACTTCAGAAGAAGGGAA
CCGTCATTTTCTTTTTCACATTTTTTAGGAAGCATGAGAGATTGAATTTGCTTTATGAATTGGGTTTGGAAGTTGGGAAAGCTAGCAATTCCGATGGATTTAAAAGCCTT
GAAACCCTACCTAGTTCAACTATTGCCACGACTGCCACTGAACCATCTAGTTCCAAGGATGTTTTTTTTATGAGGTTTTTCCCAACATTCCCAATGCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAAAATTTAAAACATGTGTGAAGCAAGAAAAAACCAGTGAAGAGAAAGAGGACTTAGATTTTGTTGAGTATTGTGAAGAAGATGATCGTGGAAATAAGAGATTGGG
GCCACCAAGTGTGTTTAATTGGTTGACTGTTTCAGAAGAAGATATAGGAGAACCGATTTGCATGACTTTGGTCGTTGCCGCCGGCAACAAAATACTTCAGAAGAAGGGAA
CCGTCATTTTCTTTTTCACATTTTTTAGGAAGCATGAGAGATTGAATTTGCTTTATGAATTGGGTTTGGAAGTTGGGAAAGCTAGCAATTCCGATGGATTTAAAAGCCTT
GAAACCCTACCTAGTTCAACTATTGCCACGACTGCCACTGAACCATCTAGTTCCAAGGATGTTTTTTTTATGAGGTTTTTCCCAACATTCCCAATGCATTAG
Protein sequenceShow/hide protein sequence
MTKFKTCVKQEKTSEEKEDLDFVEYCEEDDRGNKRLGPPSVFNWLTVSEEDIGEPICMTLVVAAGNKILQKKGTVIFFFTFFRKHERLNLLYELGLEVGKASNSDGFKSL
ETLPSSTIATTATEPSSSKDVFFMRFFPTFPMH