CuGenDBv2

Gene ID	Pay0000711
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr09:16095859..16098534
RNA-Seq Expression	Pay0000711
Synteny	Pay0000711
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.9e-32

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Query:  EHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLL
        E+ +ASSPI ++F S NKIS+V+LNDD FLLW+FQ++TALE YDLE +L+S  EPPS++  +  E+     +   T  PN  P  +  K QD+LISSWLL
Subjt:  EHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLL

Query:  GLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLK
        G M+E+ILNQML+C S K+IW  L GI+ +R LAQAMQ K
Subjt:  GLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLK

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

7.6e-09

36.22

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Query:  QLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGSAICLLCEGLSHWPNTS--PRTAPWKSLLIQHHPSHYYPTKNMSPSSSP
        Q+  MVA+ DLN+DSNWYPDS  TNHLT++ +N  IG +Y G  Q+Y ANGS +      ++H+ + S    T P+KS  + +       TKN+      
Subjt:  QLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGSAICLLCEGLSHWPNTS--PRTAPWKSLLIQHHPSHYYPTKNMSPSSSP

Query:  KVLSVVSPSIYPFSHSHQVLMQFCGTL
                S+  F+  + V  +F  TL
Subjt:  KVLSVVSPSIYPFSHSHQVLMQFCGTL

KAA0066107.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.3e-81

98.68

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Query:  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK
        MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK
Subjt:  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK

Query:  TQDQLISSWLLGLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKT
        TQDQLISSWLLGLMNE+ILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLK+
Subjt:  TQDQLISSWLLGLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKT

KAA0066108.1 Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]

1.0e-58

94.78

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Query:  LKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGSAICLLCEGLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMSPSSSPKVL
        +  MVASHDLNMDSNWYPDS  TNHLTNNFNNQFIGFKYRGERQVYDANGSAICLLCEGLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMS SSSPKVL
Subjt:  LKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGSAICLLCEGLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMSPSSSPKVL

Query:  SVVSPSIYPFSHSHQ
        SVVSPSIYPFSHSHQ
Subjt:  SVVSPSIYPFSHSHQ

XP_008465350.1 PREDICTED: uncharacterized protein LOC103502987 isoform X1 [Cucumis melo]

4.0e-175

100

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Query:  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK
        MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK
Subjt:  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK

Query:  TQDQLISSWLLGLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGS
        TQDQLISSWLLGLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGS
Subjt:  TQDQLISSWLLGLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGS

Query:  AICLLCEGLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMSPSSSPKVLSVVSPSIYPFSHSHQVLMQFCGTLLILLPIWGITELHPLWLLSLLMFLTLS
        AICLLCEGLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMSPSSSPKVLSVVSPSIYPFSHSHQVLMQFCGTLLILLPIWGITELHPLWLLSLLMFLTLS
Subjt:  AICLLCEGLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMSPSSSPKVLSVVSPSIYPFSHSHQVLMQFCGTLLILLPIWGITELHPLWLLSLLMFLTLS

Query:  ILIL
        ILIL
Subjt:  ILIL

XP_008465355.1 PREDICTED: uncharacterized protein LOC103502987 isoform X2 [Cucumis melo]

2.7e-168

97.7

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Query:  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK
        MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK
Subjt:  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK

Query:  TQDQLISSWLLGLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGS
        TQDQLISSWLLGLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGS
Subjt:  TQDQLISSWLLGLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGS

Query:  AICLLCEGLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMSPSSSPKVLSVVSPSIYPFSHSHQVLMQFCGTLLILLPIWGITELHPLWLLSLLMFLTLS
               GLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMSPSSSPKVLSVVSPSIYPFSHSHQVLMQFCGTLLILLPIWGITELHPLWLLSLLMFLTLS
Subjt:  AICLLCEGLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMSPSSSPKVLSVVSPSIYPFSHSHQVLMQFCGTLLILLPIWGITELHPLWLLSLLMFLTLS

Query:  ILIL
        ILIL
Subjt:  ILIL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CQ60 uncharacterized protein LOC103502987 isoform X1

1.9e-175

100

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Query:  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK
        MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK
Subjt:  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK

Query:  TQDQLISSWLLGLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGS
        TQDQLISSWLLGLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGS
Subjt:  TQDQLISSWLLGLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGS

Query:  AICLLCEGLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMSPSSSPKVLSVVSPSIYPFSHSHQVLMQFCGTLLILLPIWGITELHPLWLLSLLMFLTLS
        AICLLCEGLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMSPSSSPKVLSVVSPSIYPFSHSHQVLMQFCGTLLILLPIWGITELHPLWLLSLLMFLTLS
Subjt:  AICLLCEGLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMSPSSSPKVLSVVSPSIYPFSHSHQVLMQFCGTLLILLPIWGITELHPLWLLSLLMFLTLS

Query:  ILIL
        ILIL
Subjt:  ILIL

A0A1S3CQ70 uncharacterized protein LOC103502987 isoform X2

1.3e-168

97.7

Show/hide

Query:  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK
        MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK
Subjt:  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK

Query:  TQDQLISSWLLGLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGS
        TQDQLISSWLLGLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGS
Subjt:  TQDQLISSWLLGLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGS

Query:  AICLLCEGLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMSPSSSPKVLSVVSPSIYPFSHSHQVLMQFCGTLLILLPIWGITELHPLWLLSLLMFLTLS
               GLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMSPSSSPKVLSVVSPSIYPFSHSHQVLMQFCGTLLILLPIWGITELHPLWLLSLLMFLTLS
Subjt:  AICLLCEGLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMSPSSSPKVLSVVSPSIYPFSHSHQVLMQFCGTLLILLPIWGITELHPLWLLSLLMFLTLS

Query:  ILIL
        ILIL
Subjt:  ILIL

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.4e-32

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Query:  EHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLL
        E+ +ASSPI ++F S NKIS+V+LNDD FLLW+FQ++TALE YDLE +L+S  EPPS++  +  E+     +   T  PN  P  +  K QD+LISSWLL
Subjt:  EHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLL

Query:  GLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLK
        G M+E+ILNQML+C S K+IW  L GI+ +R LAQAMQ K
Subjt:  GLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLK

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.7e-09

36.22

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Query:  QLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGSAICLLCEGLSHWPNTS--PRTAPWKSLLIQHHPSHYYPTKNMSPSSSP
        Q+  MVA+ DLN+DSNWYPDS  TNHLT++ +N  IG +Y G  Q+Y ANGS +      ++H+ + S    T P+KS  + +       TKN+      
Subjt:  QLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGSAICLLCEGLSHWPNTS--PRTAPWKSLLIQHHPSHYYPTKNMSPSSSP

Query:  KVLSVVSPSIYPFSHSHQVLMQFCGTL
                S+  F+  + V  +F  TL
Subjt:  KVLSVVSPSIYPFSHSHQVLMQFCGTL

A0A5A7VGA1 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.6e-81

98.68

Show/hide

Query:  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK
        MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK
Subjt:  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVK

Query:  TQDQLISSWLLGLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKT
        TQDQLISSWLLGLMNE+ILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLK+
Subjt:  TQDQLISSWLLGLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKT

A0A5D3CT89 Reverse transcriptase, RNA-dependent DNA polymerase

5.0e-59

94.78

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Query:  LKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGSAICLLCEGLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMSPSSSPKVL
        +  MVASHDLNMDSNWYPDS  TNHLTNNFNNQFIGFKYRGERQVYDANGSAICLLCEGLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMS SSSPKVL
Subjt:  LKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGSAICLLCEGLSHWPNTSPRTAPWKSLLIQHHPSHYYPTKNMSPSSSPKVL

Query:  SVVSPSIYPFSHSHQ
        SVVSPSIYPFSHSHQ
Subjt:  SVVSPSIYPFSHSHQ

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

4.8e-06

26.77

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Query:  NKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNEDILNQMLNCNS
        N  ++ +L   N+L+W  QV    +GY+L  +LD S             T  PP        P   P     K QD+LI S +LG ++  +   +    +
Subjt:  NKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNEDILNQMLNCNS

Query:  TKDIWANLHGIYFARCLAQAMQLKTMV
           IW  L  IY         QL+T +
Subjt:  TKDIWANLHGIYFARCLAQAMQLKTMV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

3.7e-06

26.61

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Query:  NKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNEDILNQMLNCNS
        N  ++ +L   N+L+W  QV    +GY+L  +LD S             TP PP        P   P     + QD+LI S +LG ++  +   +    +
Subjt:  NKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWLLGLMNEDILNQMLNCNS

Query:  TKDIWANLHGIYFARCLAQAMQLK
           IW  L  IY         QL+
Subjt:  TKDIWANLHGIYFARCLAQAMQLK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGAATTCAATCATGGACTTGCAATATCGAGGAACACCAAGATGCTTCCTCCCCTATCTTCGAAATGTTTAGCTCTCGGAACAAGATCTCCATCGTTGAACTAAACGA
TGACAACTTTCTTCTGTGGAGATTTCAAGTTGTTACAGCATTGGAAGGTTATGATTTAGAAAAATACCTTGATTCTTCCTTAGAACCCCCATCTCAGTTTTTCAATGTCA
AAGTCGAAACACCCCAGCCACCCTTGGCGTGTCTTCTCACAAACTATCCAAACTCCAAACCCAGAATTCAAGAAGTGAAAACCCAAGATCAATTAATTTCTTCATGGTTG
CTCGGTTTGATGAATGAGGATATTCTCAACCAAATGCTCAACTGCAACTCCACAAAGGATATATGGGCCAATCTTCATGGAATTTATTTTGCACGATGTCTTGCTCAAGC
AATGCAATTAAAGACTATGGTTGCATCTCATGATTTGAATATGGACAGCAATTGGTATCCTGACTCTGACGTCACAAATCACCTCACAAATAATTTCAACAACCAATTTA
TTGGATTTAAGTATAGAGGTGAAAGACAGGTTTATGATGCAAATGGTTCAGCCATCTGTTTGCTATGTGAAGGATTATCACACTGGCCAAACACTTCTCCAAGGACTGCT
CCATGGAAGTCTTTATTGATTCAACATCACCCTTCTCATTACTATCCCACGAAGAATATGTCACCATCTAGTTCTCCTAAAGTGTTGAGCGTTGTCTCACCATCAATTTA
TCCCTTTTCTCATAGTCATCAGGTTCTAATGCAGTTTTGCGGCACCTTGCTGATCCTCCTTCCAATATGGGGAATTACGGAACTTCATCCTCTATGGCTCCTTTCCCTAT
TGATGTTCCTCACGTTATCAATTCTCATCCTATGA

mRNA sequence

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Protein sequence

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MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYLDSSLEPPSQFFNVKVETPQPPLACLLTNYPNSKPRIQEVKTQDQLISSWL
LGLMNEDILNQMLNCNSTKDIWANLHGIYFARCLAQAMQLKTMVASHDLNMDSNWYPDSDVTNHLTNNFNNQFIGFKYRGERQVYDANGSAICLLCEGLSHWPNTSPRTA
PWKSLLIQHHPSHYYPTKNMSPSSSPKVLSVVSPSIYPFSHSHQVLMQFCGTLLILLPIWGITELHPLWLLSLLMFLTLSILIL

Pay0000711 (gene) of Melon (Payzawat) v1 genome