CuGenDBv2

Gene ID	Pay0000807
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	sigma factor binding protein 2, chloroplastic
Genome location	chr08:9066281..9067114
RNA-Seq Expression	Pay0000807
Synteny	Pay0000807
Gene Ontology terms	GO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domains	IPR008889 - VQ IPR039335 - Sigma factor binding protein 1/2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025974.1 sigma factor binding protein 2 [Cucumis melo var. makuwa]

2.5e-84

100

Show/hide

Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDD
        MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDD
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDD

Query:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR
        DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR
Subjt:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR

KAE8649682.1 hypothetical protein Csa_012221 [Cucumis sativus]

2.5e-71

86.59

Show/hide

Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDD
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSKFPPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDD

Query:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR
        DGA+NLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP P+AAVVYESNAR
Subjt:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR

TYK04210.1 sigma factor binding protein 2 [Cucumis melo var. makuwa]

3.6e-83

98.78

Show/hide

Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDD
        MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSK PPSAVCDDAASTDQLYNTVSGGGDD
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDD

Query:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR
        DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGP+AAVVYESNAR
Subjt:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR

XP_008455708.1 PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo]

1.1e-95

100

Show/hide

Query:  MFSLTLSPFPLKNPFSPSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVC
        MFSLTLSPFPLKNPFSPSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVC
Subjt:  MFSLTLSPFPLKNPFSPSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVC

Query:  DDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR
        DDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR
Subjt:  DDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR

XP_011653858.1 sigma factor binding protein 2, chloroplastic [Cucumis sativus]

2.5e-71

86.59

Show/hide

Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDD
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSKFPPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDD

Query:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR
        DGA+NLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP P+AAVVYESNAR
Subjt:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3J8 VQ domain-containing protein

1.2e-71

86.59

Show/hide

Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDD
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSKFPPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDD

Query:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR
        DGA+NLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP P+AAVVYESNAR
Subjt:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR

A0A1S3C276 sigma factor binding protein 2, chloroplastic

5.3e-96

100

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Query:  MFSLTLSPFPLKNPFSPSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVC
        MFSLTLSPFPLKNPFSPSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVC
Subjt:  MFSLTLSPFPLKNPFSPSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVC

Query:  DDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR
        DDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR
Subjt:  DDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR

A0A5A7SJV9 Sigma factor binding protein 2

1.2e-84

100

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Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDD
        MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDD
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDD

Query:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR
        DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR
Subjt:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR

A0A5D3BYM2 Sigma factor binding protein 2

1.8e-83

98.78

Show/hide

Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDD
        MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSK PPSAVCDDAASTDQLYNTVSGGGDD
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDD

Query:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR
        DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGP+AAVVYESNAR
Subjt:  DGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR

A0A6J1EY87 sigma factor binding protein 2, chloroplastic-like

1.5e-42

64.63

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Query:  AGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDG
        AG  TGN+ R LD V+RRKP KKTKQ NK   KPIKVVYISNPMKVQ SAS FMALVQ+LTGQDADFPDPS FPP+AV D AA  D ++NT +       
Subjt:  AGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDG

Query:  ASNLIVNSNNPSLVDDVPAEDD-ILGSFYDDFDDLIFPPPVMGNLSGLLPGPMA-AVVYESNAR
            ++N+NNPSL  ++P EDD  LGSFYDD DDLIFPPPV+GN   LLP   A AV+YES AR
Subjt:  ASNLIVNSNNPSLVDDVPAEDD-ILGSFYDDFDDLIFPPPVMGNLSGLLPGPMA-AVVYESNAR

SwissProt top hits

e value

%identity

Alignment

O80669 Sigma factor binding protein 2, chloroplastic

3.7e-06

33.33

Show/hide

Query:  KTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNP--SLVDDVPAE
        K K+ +    KPIKV YISNPM+V+T  S+F  LVQELTGQDA     +  PPS     A                       V+ + P  S ++  P +
Subjt:  KTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNP--SLVDDVPAE

Query:  DDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNA
         ++ G +Y   D+ +F  P M   S  L G  ++  Y  NA
Subjt:  DDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNA

Q9LDH1 Sigma factor binding protein 1, chloroplastic

5.8e-07

47.67

Show/hide

Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLK------KPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFPPS
        M++ ++T     +LD   ++KP+  +++S K+ K      KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   P S
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLK------KPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFPPS

Arabidopsis top hits

e value

%identity

Alignment

AT2G41180.1 VQ motif-containing protein

2.7e-07

33.33

Show/hide

Query:  KTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNP--SLVDDVPAE
        K K+ +    KPIKV YISNPM+V+T  S+F  LVQELTGQDA     +  PPS     A                       V+ + P  S ++  P +
Subjt:  KTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNP--SLVDDVPAE

Query:  DDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNA
         ++ G +Y   D+ +F  P M   S  L G  ++  Y  NA
Subjt:  DDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNA

AT3G56710.1 sigma factor binding protein 1

4.1e-08

47.67

Show/hide

Query:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLK------KPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFPPS
        M++ ++T     +LD   ++KP+  +++S K+ K      KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   P S
Subjt:  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLK------KPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFPPS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTTTCCCTCACTCTCTCTCCTTTCCCCTTAAAAAACCCTTTTTCCCCTTCCAAAATGGACGCCGGCGCCGCCACCGGAAACAACCCCCGAACTCTCGACGCCGTTTA
CCGGCGTAAACCTGCCAAGAAAACAAAACAATCCAACAAGAAATTAAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAAT
TCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAATTCCCCCCATCCGCGGTATGCGACGACGCCGCCTCCACCGACCAACTCTAC
AACACGGTATCCGGTGGCGGTGACGACGACGGTGCTAGTAATCTTATTGTGAATAGTAACAACCCTTCACTTGTTGACGACGTGCCGGCGGAGGACGACATTCTCGGTAG
CTTTTATGACGACTTTGACGACTTGATTTTTCCTCCTCCGGTAATGGGAAACTTATCTGGGTTGCTTCCGGGTCCCATGGCAGCGGTTGTCTATGAATCTAATGCAAGGT
GA

mRNA sequence

Show/hide mRNA sequence

CTCGCTTCTCATACGCTCCTTGTCGGCGCTTGGCTTCCTCTCTCCCAATTAAATTCTTGTCGGTTTCTTCCCTCTCCTAATCCCTATGTTTTCCCTCACTCTCTCTCCTT
TCCCCTTAAAAAACCCTTTTTCCCCTTCCAAAATGGACGCCGGCGCCGCCACCGGAAACAACCCCCGAACTCTCGACGCCGTTTACCGGCGTAAACCTGCCAAGAAAACA
AAACAATCCAACAAGAAATTAAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCAC
CGGCCAAGACGCTGACTTTCCTGACCCCTCTAAATTCCCCCCATCCGCGGTATGCGACGACGCCGCCTCCACCGACCAACTCTACAACACGGTATCCGGTGGCGGTGACG
ACGACGGTGCTAGTAATCTTATTGTGAATAGTAACAACCCTTCACTTGTTGACGACGTGCCGGCGGAGGACGACATTCTCGGTAGCTTTTATGACGACTTTGACGACTTG
ATTTTTCCTCCTCCGGTAATGGGAAACTTATCTGGGTTGCTTCCGGGTCCCATGGCAGCGGTTGTCTATGAATCTAATGCAAGGTGAAAATATTTTTTGATATTATAATG
TGTGAAAGATCCTTGTATCTCTTTAATTTTATCTTCCATTTTTCTATAAGCTTTTTTAATGAACATGTATAATTGTATATTAATTGGGGAGTAATTGTTAACTTGTGAAA
AAAATATCAAGGTATCAAATTTATGATAAAAAGATGTTTTAATAAATTAAAAGGAATTTGTGGA

Protein sequence

Show/hide protein sequence

MFSLTLSPFPLKNPFSPSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLY
NTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR

Pay0000807 (gene) of Melon (Payzawat) v1 genome