CuGenDBv2

Gene ID	Pay0000816
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr07:10955614..10956288
RNA-Seq Expression	Pay0000816
Synteny	Pay0000816
Gene Ontology terms	GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0047979.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.4e-74

74.34

Show/hide

Query:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH
        MKALLGSQDVW+IV+N  EEPESDAAL+QAQREALQN RKKDQKALTIIHQ I D NFEK SGATT  QAWQILENTYK  DRVK+V LQ LRGDYESLH
Subjt:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH

Query:  MKKSESVSDYILRLLAAVNEMKRY--------------------------AIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKED
        MK+SESVSDY  RLLA VNEMKR+                          AIEESKDLSTMSIDQLM SLQ HEEKLLKKNKQ T+QLFQSKLKLKDKE 
Subjt:  MKKSESVSDYILRLLAAVNEMKRY--------------------------AIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKED

Query:  NLEKGNRGRGHGGNRGRSDF--RGQG
        +LEKGNRGRG GGNRGR DF  RGQG
Subjt:  NLEKGNRGRGHGGNRGRSDF--RGQG

KAA0051409.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.6e-74

80.81

Show/hide

Query:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH
        MKALLGSQDVW+IV+N  EEPESDAAL+QAQREALQN RKKDQKALTIIHQ I D NFEK SGATT  QAW+ILENTYK  DRVK+V LQ LRGDYESLH
Subjt:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH

Query:  MKKSESVSDYILRLLAAVNEMKRYAIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKEDNLEKGNRGRGHGGNRGRSDFRGQG
        MK+SESV DY  RLLA VNEMKR+   ESKDLSTMSIDQL+ SLQ HEEKLLKKNKQ T+QLFQSKLKLKDKEDNLEKGNRGRG GGN GR DF+ +G
Subjt:  MKKSESVSDYILRLLAAVNEMKRYAIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKEDNLEKGNRGRGHGGNRGRSDFRGQG

KAA0052397.1 UBN2 domain-containing protein [Cucumis melo var. makuwa]

6.1e-92

85.27

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Query:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH
        MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATT R AWQILENTYK+ADRVKRVCLQ LRGDYESLH
Subjt:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH

Query:  MKKSESVSDYILRLLAAVNEMKRY--------------------------AIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKED
        MKKSESVSDYILRLLA VNEMKRY                          AIEESKDLSTMSIDQLM SLQTHEEKLLKKNKQTTKQLFQSKLKLKDKED
Subjt:  MKKSESVSDYILRLLAAVNEMKRY--------------------------AIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKED

Query:  NLEKGNRGRGHGGNRGRSDFRGQG
        NLEKGNRGRGHGGNRGRSDFR QG
Subjt:  NLEKGNRGRGHGGNRGRSDFRGQG

TYK18362.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.4e-74

74.34

Show/hide

Query:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH
        MKALLGSQDVW+IV+N  EEPESDAAL+QAQREALQN RKKDQKALTIIHQ I D NFEK SGATT  QAWQILENTYK  DRVK+V LQ LRGDYESLH
Subjt:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH

Query:  MKKSESVSDYILRLLAAVNEMKRY--------------------------AIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKED
        MK+SESVSDY  RLLA VNEMKR+                          AIEESKDLSTMSIDQLM SLQ HEEKLLKKNKQ T+QLFQSKLKLKDKE 
Subjt:  MKKSESVSDYILRLLAAVNEMKRY--------------------------AIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKED

Query:  NLEKGNRGRGHGGNRGRSDF--RGQG
        +LEKGNRGRG GGNRGR DF  RGQG
Subjt:  NLEKGNRGRGHGGNRGRSDF--RGQG

XP_008444306.1 PREDICTED: uncharacterized protein LOC103487674 [Cucumis melo]

3.1e-96

96.46

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Query:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH
        MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATT R AWQILENTYK+ADRVKRVCLQ LRGDYESLH
Subjt:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH

Query:  MKKSESVSDYILRLLAAVNEMKRYAIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKEDNLEKGNRGRGHGGNRGRSDFRGQG
        MKKSESVSDYILRLLA VNEMKRYAIEESKDLSTMSIDQLM SLQTHEEKLLKKNKQTTKQLFQSKLKLKDKEDNLEKGNRGRGHGGNRGRSDFR QG
Subjt:  MKKSESVSDYILRLLAAVNEMKRYAIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKEDNLEKGNRGRGHGGNRGRSDFRGQG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BAT9 uncharacterized protein LOC103487674

1.5e-96

96.46

Show/hide

Query:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH
        MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATT R AWQILENTYK+ADRVKRVCLQ LRGDYESLH
Subjt:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH

Query:  MKKSESVSDYILRLLAAVNEMKRYAIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKEDNLEKGNRGRGHGGNRGRSDFRGQG
        MKKSESVSDYILRLLA VNEMKRYAIEESKDLSTMSIDQLM SLQTHEEKLLKKNKQTTKQLFQSKLKLKDKEDNLEKGNRGRGHGGNRGRSDFR QG
Subjt:  MKKSESVSDYILRLLAAVNEMKRYAIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKEDNLEKGNRGRGHGGNRGRSDFRGQG

A0A5A7SJX6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.6e-74

74.34

Show/hide

Query:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH
        MKALLGSQDVW+IV+N  EEPESDAAL+QAQREALQN RKKDQKALTIIHQ I D NFEK SGATT  QAWQILENTYK  DRVK+V LQ LRGDYESLH
Subjt:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH

Query:  MKKSESVSDYILRLLAAVNEMKRY--------------------------AIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKED
        MK+SESVSDY  RLLA VNEMKR+                          AIEESKDLSTMSIDQLM SLQ HEEKLLKKNKQ T+QLFQSKLKLKDKE 
Subjt:  MKKSESVSDYILRLLAAVNEMKRY--------------------------AIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKED

Query:  NLEKGNRGRGHGGNRGRSDF--RGQG
        +LEKGNRGRG GGNRGR DF  RGQG
Subjt:  NLEKGNRGRGHGGNRGRSDF--RGQG

A0A5A7UDA0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-74

80.81

Show/hide

Query:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH
        MKALLGSQDVW+IV+N  EEPESDAAL+QAQREALQN RKKDQKALTIIHQ I D NFEK SGATT  QAW+ILENTYK  DRVK+V LQ LRGDYESLH
Subjt:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH

Query:  MKKSESVSDYILRLLAAVNEMKRYAIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKEDNLEKGNRGRGHGGNRGRSDFRGQG
        MK+SESV DY  RLLA VNEMKR+   ESKDLSTMSIDQL+ SLQ HEEKLLKKNKQ T+QLFQSKLKLKDKEDNLEKGNRGRG GGN GR DF+ +G
Subjt:  MKKSESVSDYILRLLAAVNEMKRYAIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKEDNLEKGNRGRGHGGNRGRSDFRGQG

A0A5A7V3X9 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.6e-74

74.34

Show/hide

Query:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH
        MKALLGSQDVW+IV+N  EEPESDAAL+QAQREALQN RKKDQKALTIIHQ I D NFEK SGATT  QAWQILENTYK  DRVK+V LQ LRGDYESLH
Subjt:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH

Query:  MKKSESVSDYILRLLAAVNEMKRY--------------------------AIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKED
        MK+SESVSDY  RLLA VNEMKR+                          AIEESKDLSTMSIDQLM SLQ HEEKLLKKNKQ T+QLFQSKLKLKDKE 
Subjt:  MKKSESVSDYILRLLAAVNEMKRY--------------------------AIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKED

Query:  NLEKGNRGRGHGGNRGRSDF--RGQG
        +LEKGNRGRG GGNRGR DF  RGQG
Subjt:  NLEKGNRGRGHGGNRGRSDF--RGQG

A0A5D3D6U8 UBN2 domain-containing protein

2.9e-92

85.27

Show/hide

Query:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH
        MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATT R AWQILENTYK+ADRVKRVCLQ LRGDYESLH
Subjt:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLH

Query:  MKKSESVSDYILRLLAAVNEMKRY--------------------------AIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKED
        MKKSESVSDYILRLLA VNEMKRY                          AIEESKDLSTMSIDQLM SLQTHEEKLLKKNKQTTKQLFQSKLKLKDKED
Subjt:  MKKSESVSDYILRLLAAVNEMKRY--------------------------AIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKED

Query:  NLEKGNRGRGHGGNRGRSDFRGQG
        NLEKGNRGRGHGGNRGRSDFR QG
Subjt:  NLEKGNRGRGHGGNRGRSDFRGQG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G48720.1 unknown protein

5.6e-11

45.59

Show/hide

Query:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTR
        MKA+LG+ DVW IV     EPE++ +LSQ Q++ L++ RK+D+KAL +I+Q + +  FEK   AT+ +
Subjt:  MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTR

AT3G21000.1 Gag-Pol-related retrotransposon family protein

1.3e-07

28.57

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Query:  KALLGSQDVWN-IVNNVCEEPESDAALSQA-QREALQNIRK---KDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKAD--RVKRVCLQILRG
        K+ L  Q +W+ +VN V ++P  +  L+   Q E L   R    KD KAL I+  ++ D  F KT  A++ +  W +L    ++A   R+++V ++ L  
Subjt:  KALLGSQDVWN-IVNNVCEEPESDAALSQA-QREALQNIRK---KDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKAD--RVKRVCLQILRG

Query:  DYESLHMKKSESVSDYILRLLAAVNEMKRYAIEES-----KDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQ
          E L M   ES S Y+ + L  +  + R  +E+S     K++ T ++      L +  E+L+  +K T+K L +
Subjt:  DYESLHMKKSESVSDYILRLLAAVNEMKRYAIEES-----KDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQ

Sequences

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CDS sequence

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ATGAAAGCTTTACTCGGTTCACAAGATGTGTGGAACATTGTTAATAATGTTTGTGAAGAACCAGAAAGTGATGCGGCTTTGAGTCAAGCTCAACGAGAAGCTTTACAAAA
TATAAGGAAAAAAGATCAAAAGGCTCTTACCATCATTCATCAAACCATTCATGATTTCAATTTTGAGAAAACTTCTGGAGCAACTACTACACGTCAAGCATGGCAAATTT
TGGAGAATACATATAAAAAAGCAGATCGAGTGAAGAGGGTTTGCCTTCAAATATTGAGAGGTGATTATGAATCATTACATATGAAGAAGTCTGAATCAGTTTCAGATTAT
ATTTTAAGACTGCTAGCAGCAGTAAATGAAATGAAGAGATATGCTATTGAAGAATCAAAGGATTTGAGTACAATGTCAATTGATCAACTTATGAGTTCTTTACAAACCCA
TGAAGAGAAGCTTCTTAAGAAGAATAAGCAGACGACTAAGCAACTTTTTCAGTCAAAGTTAAAATTAAAAGACAAGGAAGACAACCTAGAAAAAGGCAATCGAGGTCGAG
GACATGGTGGCAATCGTGGACGTAGTGATTTCAGAGGTCAAGGTTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MKALLGSQDVWNIVNNVCEEPESDAALSQAQREALQNIRKKDQKALTIIHQTIHDFNFEKTSGATTTRQAWQILENTYKKADRVKRVCLQILRGDYESLHMKKSESVSDY
ILRLLAAVNEMKRYAIEESKDLSTMSIDQLMSSLQTHEEKLLKKNKQTTKQLFQSKLKLKDKEDNLEKGNRGRGHGGNRGRSDFRGQG

Pay0000816 (gene) of Melon (Payzawat) v1 genome