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Pay0000859 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0000859
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionPol protein
Genome locationchr08:10545384..10545872
RNA-Seq ExpressionPay0000859
SyntenyPay0000859
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025823.1 pol protein [Cucumis melo var. makuwa]1.8e-6986.42Show/hide
Query:  MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WIGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP
        MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG                      WIGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP
Subjt:  MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WIGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP

Query:  LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN
        LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN
Subjt:  LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN

KAA0035814.1 pol protein [Cucumis melo var. makuwa]1.5e-5772.84Show/hide
Query:  MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WIGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP
        MLTA+SRQKSYA+ +RKDLEFEV DMVFLKV PMKG                      WIGPVAYRLALPPSFSAVHDVF+VSMLR+Y  DPTHVVD EP
Subjt:  MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WIGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP

Query:  LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN
        LQI+E+L+Y+E PVEILAR+VKML NRGISLVK+LWRNHGVEEATWER+ED+RAQYPELFE+
Subjt:  LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN

KAA0047631.1 pol protein [Cucumis melo var. makuwa]2.0e-5774.07Show/hide
Query:  MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WIGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP
        MLTAQSRQKSY +EQRKDLEF+V DMVFLKV PMK                        IGPVAYRLALPP+FS VHDVF+VSMLR+YVADPTHVVDFEP
Subjt:  MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WIGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP

Query:  LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN
        LQINE+LSY+E+PVEILAREVKML NR I+LVKVLWRNHGV EATWERE+D+RAQYPELFEN
Subjt:  LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN

KAA0051192.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.4e-5875.78Show/hide
Query:  LTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG-------------WIGP---------VAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPL
        LTAQS QKSYA+++RKDLEFEV DMVFLKV PMKG             ++GP         VAYRLALPPSFS  HDVF+VSMLRRYVADPTHVVDFEPL
Subjt:  LTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG-------------WIGP---------VAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPL

Query:  QINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN
        QINEDLSY+EQP+EILAREVKMLHNR ISLVKVLWRNHGVEEATWEREED+R QYPELFE+
Subjt:  QINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN

TYK29789.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.7e-6178.4Show/hide
Query:  MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKGW----------------------IGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP
        MLTAQSRQKSYA+E+RKDLEF+V DMVFLKV PMKG+                      IGPVAYRLALPPSFSAVHDVF+VSMLRRYVADPTHVV FEP
Subjt:  MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKGW----------------------IGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP

Query:  LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN
        LQINEDLSY+EQPVEILAREVKML NR ISLVKVLWRNHGVEEATWEREED+RAQYPELFE+
Subjt:  LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN

TrEMBL top hitse value%identityAlignment
A0A5A7SMC0 Pol protein8.5e-7086.42Show/hide
Query:  MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WIGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP
        MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG                      WIGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP
Subjt:  MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WIGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP

Query:  LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN
        LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN
Subjt:  LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN

A0A5A7SWV1 Pol protein7.5e-5872.84Show/hide
Query:  MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WIGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP
        MLTA+SRQKSYA+ +RKDLEFEV DMVFLKV PMKG                      WIGPVAYRLALPPSFSAVHDVF+VSMLR+Y  DPTHVVD EP
Subjt:  MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WIGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP

Query:  LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN
        LQI+E+L+Y+E PVEILAR+VKML NRGISLVK+LWRNHGVEEATWER+ED+RAQYPELFE+
Subjt:  LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN

A0A5A7U220 Pol protein9.8e-5874.07Show/hide
Query:  MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WIGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP
        MLTAQSRQKSY +EQRKDLEF+V DMVFLKV PMK                        IGPVAYRLALPP+FS VHDVF+VSMLR+YVADPTHVVDFEP
Subjt:  MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG----------------------WIGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP

Query:  LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN
        LQINE+LSY+E+PVEILAREVKML NR I+LVKVLWRNHGV EATWERE+D+RAQYPELFEN
Subjt:  LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN

A0A5A7U5P9 DNA/RNA polymerases superfamily protein1.2e-5875.78Show/hide
Query:  LTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG-------------WIGP---------VAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPL
        LTAQS QKSYA+++RKDLEFEV DMVFLKV PMKG             ++GP         VAYRLALPPSFS  HDVF+VSMLRRYVADPTHVVDFEPL
Subjt:  LTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKG-------------WIGP---------VAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPL

Query:  QINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN
        QINEDLSY+EQP+EILAREVKMLHNR ISLVKVLWRNHGVEEATWEREED+R QYPELFE+
Subjt:  QINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN

A0A5D3E202 Ty3-gypsy retrotransposon protein3.2e-6178.4Show/hide
Query:  MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKGW----------------------IGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP
        MLTAQSRQKSYA+E+RKDLEF+V DMVFLKV PMKG+                      IGPVAYRLALPPSFSAVHDVF+VSMLRRYVADPTHVV FEP
Subjt:  MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKGW----------------------IGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEP

Query:  LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN
        LQINEDLSY+EQPVEILAREVKML NR ISLVKVLWRNHGVEEATWEREED+RAQYPELFE+
Subjt:  LQINEDLSYKEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGACAGCACAGAGCAGACAGAAGAGTTATGCTAATGAACAGCGTAAGGATCTCGAGTTTGAGGTGGAAGACATGGTCTTTCTGAAGGTAACACCTATGAAG
GGTTGGATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCCCCATCATTTTCTGCAGTGCATGATGTGTTCTATGTCTCCATGCTGAGGAGGTATGTTGCAGACCCG
ACACATGTGGTTGACTTTGAGCCATTGCAAATTAATGAGGACTTGAGCTACAAGGAGCAACCAGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTCCATAATCGA
GGAATCTCACTGGTCAAAGTTCTTTGGCGAAACCACGGAGTTGAAGAGGCCACATGGGAGAGAGAAGAGGACTTGAGAGCCCAGTACCCCGAGCTGTTCGAGAAC
TAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGACAGCACAGAGCAGACAGAAGAGTTATGCTAATGAACAGCGTAAGGATCTCGAGTTTGAGGTGGAAGACATGGTCTTTCTGAAGGTAACACCTATGAAG
GGTTGGATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCCCCATCATTTTCTGCAGTGCATGATGTGTTCTATGTCTCCATGCTGAGGAGGTATGTTGCAGACCCG
ACACATGTGGTTGACTTTGAGCCATTGCAAATTAATGAGGACTTGAGCTACAAGGAGCAACCAGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTCCATAATCGA
GGAATCTCACTGGTCAAAGTTCTTTGGCGAAACCACGGAGTTGAAGAGGCCACATGGGAGAGAGAAGAGGACTTGAGAGCCCAGTACCCCGAGCTGTTCGAGAAC
TAG
Protein sequenceShow/hide protein sequence
MLTAQSRQKSYANEQRKDLEFEVEDMVFLKVTPMKGWIGPVAYRLALPPSFSAVHDVFYVSMLRRYVADPTHVVDFEPLQINEDLSYKEQPVEILAREVKMLHNR
GISLVKVLWRNHGVEEATWEREEDLRAQYPELFEN