; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0001038 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0001038
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr10:18417052..18417896
RNA-Seq ExpressionPay0001038
SyntenyPay0001038
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036574.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.1e-8967.73Show/hide
Query:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP---------------------APLLLNLGLLSALTI
        +AKGY+QEY IDYEE FA +AR+TSVRSLLAIA AKQWPLLQMDVK+ FLNGTLSEEVYMKPPP                     AP        S +T 
Subjt:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP---------------------APLLLNLGLLSALTI

Query:  LPYLLVRHP------------ILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSST
        L +    H             +LLLLYVDDMI+TGDD QAISDLQCYLGKHFEMK+LG L+YFL LEISS S+GYYLS+AKYAS+LL RS ITDS T ST
Subjt:  LPYLLVRHP------------ILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSST

Query:  PLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS
        PLD NVRLTPFDGVPL+DPTL +QLVGSLIYL VT  DI Y VHIVSQFMAAPRTIHF+A++RIL  IK TLGHGLQFSSQS
Subjt:  PLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS

KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.1e-8967.73Show/hide
Query:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP---------------------APLLLNLGLLSALTI
        +AKGY+QEY IDYEE FA +AR+TSVRSLLAIA AKQWPLLQMDVK+ FLNGTLSEEVYMKPPP                     AP        S +T 
Subjt:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP---------------------APLLLNLGLLSALTI

Query:  LPYLLVRHP------------ILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSST
        L +    H             +LLLLYVDDMI+TGDD QAISDLQCYLGKHFEMK+LG L+YFL LEISS S+GYYLS+AKYAS+LL RS ITDS T ST
Subjt:  LPYLLVRHP------------ILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSST

Query:  PLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS
        PLD NVRLTPFDGVPL+DPTL +QLVGSLIYL VT  DI Y VHIVSQFMAAPRTIHF+A++RIL  IK TLGHGLQFSSQS
Subjt:  PLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS

KAA0065380.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.1e-8967.73Show/hide
Query:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP---------------------APLLLNLGLLSALTI
        +AKGY+QEY IDYEE FA +AR+TSVRSLLAIA AKQWPLLQMDVK+ FLNGTLSEEVYMKPPP                     AP        S +T 
Subjt:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP---------------------APLLLNLGLLSALTI

Query:  LPYLLVRHP------------ILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSST
        L +    H             +LLLLYVDDMI+TGDD QAISDLQCYLGKHFEMK+LG L+YFL LEISS S+GYYLS+AKYAS+LL RS ITDS T ST
Subjt:  LPYLLVRHP------------ILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSST

Query:  PLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS
        PLD NVRLTPFDGVPL+DPTL +QLVGSLIYL VT  DI Y VHIVSQFMAAPRTIHF+A++RIL  IK TLGHGLQFSSQS
Subjt:  PLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS

TYK28981.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.4e-115100Show/hide
Query:  LLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPPAPLLLNLGLLSALTILPYLLVRHPILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLS
        LLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPPAPLLLNLGLLSALTILPYLLVRHPILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLS
Subjt:  LLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPPAPLLLNLGLLSALTILPYLLVRHPILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLS

Query:  YFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSSTPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAI
        YFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSSTPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAI
Subjt:  YFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSSTPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAI

Query:  IRILHNIKSTLGHGLQFSSQSL
        IRILHNIKSTLGHGLQFSSQSL
Subjt:  IRILHNIKSTLGHGLQFSSQSL

XP_016901627.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]2.2e-131100Show/hide
Query:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPPAPLLLNLGLLSALTILPYLLVRHPILLLLYVDDMIV
        MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPPAPLLLNLGLLSALTILPYLLVRHPILLLLYVDDMIV
Subjt:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPPAPLLLNLGLLSALTILPYLLVRHPILLLLYVDDMIV

Query:  TGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSSTPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLI
        TGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSSTPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLI
Subjt:  TGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSSTPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLI

Query:  VTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQSL
        VTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQSL
Subjt:  VTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQSL

TrEMBL top hitse value%identityAlignment
A0A1S4E064 uncharacterized mitochondrial protein AtMg00810-like1.1e-131100Show/hide
Query:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPPAPLLLNLGLLSALTILPYLLVRHPILLLLYVDDMIV
        MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPPAPLLLNLGLLSALTILPYLLVRHPILLLLYVDDMIV
Subjt:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPPAPLLLNLGLLSALTILPYLLVRHPILLLLYVDDMIV

Query:  TGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSSTPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLI
        TGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSSTPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLI
Subjt:  TGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSSTPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLI

Query:  VTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQSL
        VTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQSL
Subjt:  VTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQSL

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-8967.73Show/hide
Query:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP---------------------APLLLNLGLLSALTI
        +AKGY+QEY IDYEE FA +AR+TSVRSLLAIA AKQWPLLQMDVK+ FLNGTLSEEVYMKPPP                     AP        S +T 
Subjt:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP---------------------APLLLNLGLLSALTI

Query:  LPYLLVRHP------------ILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSST
        L +    H             +LLLLYVDDMI+TGDD QAISDLQCYLGKHFEMK+LG L+YFL LEISS S+GYYLS+AKYAS+LL RS ITDS T ST
Subjt:  LPYLLVRHP------------ILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSST

Query:  PLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS
        PLD NVRLTPFDGVPL+DPTL +QLVGSLIYL VT  DI Y VHIVSQFMAAPRTIHF+A++RIL  IK TLGHGLQFSSQS
Subjt:  PLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-8967.73Show/hide
Query:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP---------------------APLLLNLGLLSALTI
        +AKGY+QEY IDYEE FA +AR+TSVRSLLAIA AKQWPLLQMDVK+ FLNGTLSEEVYMKPPP                     AP        S +T 
Subjt:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP---------------------APLLLNLGLLSALTI

Query:  LPYLLVRHP------------ILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSST
        L +    H             +LLLLYVDDMI+TGDD QAISDLQCYLGKHFEMK+LG L+YFL LEISS S+GYYLS+AKYAS+LL RS ITDS T ST
Subjt:  LPYLLVRHP------------ILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSST

Query:  PLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS
        PLD NVRLTPFDGVPL+DPTL +QLVGSLIYL VT  DI Y VHIVSQFMAAPRTIHF+A++RIL  IK TLGHGLQFSSQS
Subjt:  PLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS

A0A5D3DWU7 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-8967.73Show/hide
Query:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP---------------------APLLLNLGLLSALTI
        +AKGY+QEY IDYEE FA +AR+TSVRSLLAIA AKQWPLLQMDVK+ FLNGTLSEEVYMKPPP                     AP        S +T 
Subjt:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP---------------------APLLLNLGLLSALTI

Query:  LPYLLVRHP------------ILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSST
        L +    H             +LLLLYVDDMI+TGDD QAISDLQCYLGKHFEMK+LG L+YFL LEISS S+GYYLS+AKYAS+LL RS ITDS T ST
Subjt:  LPYLLVRHP------------ILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSST

Query:  PLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS
        PLD NVRLTPFDGVPL+DPTL +QLVGSLIYL VT  DI Y VHIVSQFMAAPRTIHF+A++RIL  IK TLGHGLQFSSQS
Subjt:  PLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS

A0A5D3DZN4 Putative mitochondrial protein4.1e-115100Show/hide
Query:  LLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPPAPLLLNLGLLSALTILPYLLVRHPILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLS
        LLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPPAPLLLNLGLLSALTILPYLLVRHPILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLS
Subjt:  LLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPPAPLLLNLGLLSALTILPYLLVRHPILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLS

Query:  YFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSSTPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAI
        YFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSSTPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAI
Subjt:  YFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSSTPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAI

Query:  IRILHNIKSTLGHGLQFSSQSL
        IRILHNIKSTLGHGLQFSSQSL
Subjt:  IRILHNIKSTLGHGLQFSSQSL

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.1e-2228.62Show/hide
Query:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPPAPL---------------------------------
        +A+G+ Q+Y IDYEE FA +ARI+S R +L++ +     + QMDVK+ FLNGTL EE+YM+ P                                     
Subjt:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPPAPL---------------------------------

Query:  --LLNLGLLSALTILPYLLVRHPILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTS
           +N  +   + IL    +   I +LLYVDD+++   D   +++ + YL + F M +L  + +F+ + I    +  YLS++ Y   +L++ ++ +    
Subjt:  --LLNLGLLSALTILPYLLVRHPILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTS

Query:  STPL--DLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIV-THHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQF
        STPL   +N  L   D    D  T  + L+G L+Y+++ T  D+T  V+I+S++ +   +  +  + R+L  +K T+   L F
Subjt:  STPL--DLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIV-THHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQF

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-949.6e-2129.25Show/hide
Query:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPP-----------------------PAPLLLNLGLLSAL
        + KG+ Q+  ID++E+F+ + ++TS+R++L++A +    + Q+DVK+ FL+G L EE+YM+ P                        AP    +   S +
Subjt:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPP-----------------------PAPLLLNLGLLSAL

Query:  TILPYLLV-------------RHPILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEI--SSLSNGYYLSKAKYASNLLTRSSITDS
            YL                + I+LLLYVDDM++ G D   I+ L+  L K F+MK+LG     L ++I     S   +LS+ KY   +L R ++ ++
Subjt:  TILPYLLV-------------RHPILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEI--SSLSNGYYLSKAKYASNLLTRSSITDS

Query:  LTSSTPLDLNVRLTPFDGVPLDDPTLDQQ----------LVGSLIY-LIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQF
           STPL  +++L+      +   T++++           VGSL+Y ++ T  DI + V +VS+F+  P   H+ A+  IL  ++ T G  L F
Subjt:  LTSSTPLDLNVRLTPFDGVPLDDPTLDQQ----------LVGSLIY-LIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQF

P92519 Uncharacterized mitochondrial protein AtMg008103.1e-1937.11Show/hide
Query:  LLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSSTPLDLNVRLTPFDGVPLDDPTLDQ
        LLLYVDD+++TG     ++ L   L   F MK+LG + YFL ++I +  +G +LS+ KYA  +L  + + D    STPL L +  +        DP+  +
Subjt:  LLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSSTPLDLNVRLTPFDGVPLDDPTLDQ

Query:  QLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS
         +VG+L YL +T  DI+Y V+IV Q M  P    F  + R+L  +K T+ HGL     S
Subjt:  QLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.2e-3332.73Show/hide
Query:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP-----------------------AP---------LL
        +AKGYNQ   +DY E F+ + + TS+R +L +AV + WP+ Q+DV + FL GTL+++VYM  PP                       AP          L
Subjt:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP-----------------------AP---------LL

Query:  LNLGLLSALTILPYLLVRHP---ILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTS
        L +G +++++     +++     + +L+YVDD+++TG+D   + +    L + F +K+   L YFL +E   +  G +LS+ +Y  +LL R+++  +   
Subjt:  LNLGLLSALTILPYLLVRHP---ILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTS

Query:  STPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGL
        +TP+  + +L+ + G  L DPT  + +VGSL YL  T  DI+Y V+ +SQFM  P   H  A+ RIL  +  T  HG+
Subjt:  STPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE29.9e-3433.09Show/hide
Query:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP-----------------------AP---------LL
        +AKGYNQ   +DY E F+ + + TS+R +L +AV + WP+ Q+DV + FL GTL++EVYM  PP                       AP          L
Subjt:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP-----------------------AP---------LL

Query:  LNLGLLSALTILPYLLV---RHPILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTS
        L +G +++++     ++   R  I +L+YVDD+++TG+D   +      L + F +K    L YFL +E   +  G +LS+ +Y  +LL R+++  +   
Subjt:  LNLGLLSALTILPYLLV---RHPILLLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTS

Query:  STPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGL
        +TP+  + +LT   G  L DPT  + +VGSL YL  T  D++Y V+ +SQ+M  P   H++A+ R+L  +  T  HG+
Subjt:  STPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGL

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 84.1e-3533.33Show/hide
Query:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP------------------------------------
        +AKGY Q+  ID+ E F+ + ++TSV+ +LAI+    + L Q+D+ + FLNG L EE+YMK PP                                    
Subjt:  MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPP------------------------------------

Query:  APLLLNLGLLSALTILPYLLVRHPIL---LLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITD
        +  L+  G + + +   Y L     L   +L+YVDD+I+  ++  A+ +L+  L   F++++LG L YFL LEI+  + G  + + KYA +LL  + +  
Subjt:  APLLLNLGLLSALTILPYLLVRHPIL---LLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITD

Query:  SLTSSTPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS
           SS P+D +V  +   G    D    ++L+G L+YL +T  DI++ V+ +SQF  APR  H  A+++ILH IK T+G GL +SSQ+
Subjt:  SLTSSTPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS

ATMG00240.1 Gag-Pol-related retrotransposon family protein9.0e-0641.51Show/hide
Query:  IYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS
        +YL +T  D+T+ V+ +SQF +A RT    A+ ++LH +K T+G GL +S+ S
Subjt:  IYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS

ATMG00810.1 DNA/RNA polymerases superfamily protein2.2e-2037.11Show/hide
Query:  LLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSSTPLDLNVRLTPFDGVPLDDPTLDQ
        LLLYVDD+++TG     ++ L   L   F MK+LG + YFL ++I +  +G +LS+ KYA  +L  + + D    STPL L +  +        DP+  +
Subjt:  LLLYVDDMIVTGDDFQAISDLQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSSTPLDLNVRLTPFDGVPLDDPTLDQ

Query:  QLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS
         +VG+L YL +T  DI+Y V+IV Q M  P    F  + R+L  +K T+ HGL     S
Subjt:  QLVGSLIYLIVTHHDITYVVHIVSQFMAAPRTIHFSAIIRILHNIKSTLGHGLQFSSQS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAAGGCTATAATCAGGAATATGACATTGATTATGAAGAAATGTTTGCTTTAATGGCTCGAATAACGTCTGTTCGTAGTCTTTTAGCCATCGCAGTTGCAAAACA
ATGGCCCCTTCTTCAAATGGATGTTAAAAGTGTGTTTCTAAATGGCACCCTATCTGAAGAAGTCTATATGAAACCACCACCCGCTCCACTATTACTCAACTTGGGTTTAC
TTTCAGCTCTTACGATTCTACCTTATTTACTCGTCAGACACCCCATTCTCCTTCTTTTATATGTTGATGACATGATTGTTACTGGAGATGACTTTCAAGCCATATCTGAT
TTGCAATGTTACCTGGGCAAGCACTTTGAGATGAAGAATTTAGGAACCCTTAGCTATTTTCTTGATCTTGAGATCTCATCCTTGTCTAATGGCTACTACTTATCTAAAGC
CAAGTATGCCTCTAATCTCCTAACTCGGTCTAGTATCACTGATTCTCTCACATCCTCAACTCCTCTAGATCTGAATGTGCGACTCACTCCTTTTGATGGTGTTCCTCTTG
ACGATCCCACTCTGGATCAACAACTTGTTGGCAGTTTGATTTACTTAATTGTGACCCATCATGATATTACGTATGTAGTTCACATTGTTAGTCAATTCATGGCTGCTCCT
CGCACTATTCACTTCAGTGCTATCATCCGTATTTTACACAATATTAAAAGCACTTTAGGTCATGGTCTACAATTCTCCTCACAGTCTCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAAGGCTATAATCAGGAATATGACATTGATTATGAAGAAATGTTTGCTTTAATGGCTCGAATAACGTCTGTTCGTAGTCTTTTAGCCATCGCAGTTGCAAAACA
ATGGCCCCTTCTTCAAATGGATGTTAAAAGTGTGTTTCTAAATGGCACCCTATCTGAAGAAGTCTATATGAAACCACCACCCGCTCCACTATTACTCAACTTGGGTTTAC
TTTCAGCTCTTACGATTCTACCTTATTTACTCGTCAGACACCCCATTCTCCTTCTTTTATATGTTGATGACATGATTGTTACTGGAGATGACTTTCAAGCCATATCTGAT
TTGCAATGTTACCTGGGCAAGCACTTTGAGATGAAGAATTTAGGAACCCTTAGCTATTTTCTTGATCTTGAGATCTCATCCTTGTCTAATGGCTACTACTTATCTAAAGC
CAAGTATGCCTCTAATCTCCTAACTCGGTCTAGTATCACTGATTCTCTCACATCCTCAACTCCTCTAGATCTGAATGTGCGACTCACTCCTTTTGATGGTGTTCCTCTTG
ACGATCCCACTCTGGATCAACAACTTGTTGGCAGTTTGATTTACTTAATTGTGACCCATCATGATATTACGTATGTAGTTCACATTGTTAGTCAATTCATGGCTGCTCCT
CGCACTATTCACTTCAGTGCTATCATCCGTATTTTACACAATATTAAAAGCACTTTAGGTCATGGTCTACAATTCTCCTCACAGTCTCTCTGA
Protein sequenceShow/hide protein sequence
MAKGYNQEYDIDYEEMFALMARITSVRSLLAIAVAKQWPLLQMDVKSVFLNGTLSEEVYMKPPPAPLLLNLGLLSALTILPYLLVRHPILLLLYVDDMIVTGDDFQAISD
LQCYLGKHFEMKNLGTLSYFLDLEISSLSNGYYLSKAKYASNLLTRSSITDSLTSSTPLDLNVRLTPFDGVPLDDPTLDQQLVGSLIYLIVTHHDITYVVHIVSQFMAAP
RTIHFSAIIRILHNIKSTLGHGLQFSSQSL