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Pay0001123 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0001123
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGag/pol protein
Genome locationchr10:16002927..16003469
RNA-Seq ExpressionPay0001123
SyntenyPay0001123
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035676.1 gag/pol protein [Cucumis melo var. makuwa]4.6e-7280.56Show/hide
Query:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSR----------KKAHVYILASMSDVLAKKHESLATTKKIIDSLKG
        MN  IVQLLAS+KLNGDNYA WK  LNTILVVDDLRF+LTEECPQTP SNANR SR          +KA VYILASMSDVLAKKHE LATTK+I+DSLKG
Subjt:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSR----------KKAHVYILASMSDVLAKKHESLATTKKIIDSLKG

Query:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
        MFGQ EWS+RHE IKYIYTKRMK+ TS+REHVLDMMMH NI EVNGGAIDEANQV+FILESL KSFIPFQTNASL KIEF
Subjt:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
KAA0048103.1 gag/pol protein [Cucumis melo var. makuwa]4.6e-7281.67Show/hide
Query:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSR----------KKAHVYILASMSDVLAKKHESLATTKKIIDSLKG
        MN LIVQLLASEKLN DNY  WK  LNTILVVDDLRFVLTEECPQTPASNANRTSR          +KA VYILASMSDVLAKKHESLAT K+I+DSLKG
Subjt:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSR----------KKAHVYILASMSDVLAKKHESLATTKKIIDSLKG

Query:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
        MFGQ +WS+RH+ IKYIYTKRMKE TSIREHVL MM+H NIAEVNGGAIDEANQV+FILESLPKSFIPFQTN SL KIEF
Subjt:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
KAA0055182.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-7382.78Show/hide
Query:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSRK----------KAHVYILASMSDVLAKKHESLATTKKIIDSLKG
        MN  IVQLLASEKLNGDNYAAWK  LNTILVVDDLRF+LT+ECPQTP SNANR SRK          K  VYILASMSDVLAKK+ESLAT K+IIDSLKG
Subjt:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSRK----------KAHVYILASMSDVLAKKHESLATTKKIIDSLKG

Query:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
        MFGQ EWS+RHE IKYIYTKRMKE TS+REHVLDMMMH NIAEVNGGAIDEANQVNFILESL KSFIPFQTNASL KIEF
Subjt:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
KAA0064149.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-7280.56Show/hide
Query:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSRK----------KAHVYILASMSDVLAKKHESLATTKKIIDSLKG
        MN  IVQLLASEKLNGDNY  WK  LNTILVVD+LRFVLTEECPQTPASN NRTSRK          K  VYILASMSDVLAKKHESLATTK+ +DSLKG
Subjt:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSRK----------KAHVYILASMSDVLAKKHESLATTKKIIDSLKG

Query:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
        MFGQQEWS+RHE  KYIYTKRMKE TS+REHVLDMMMH NI +VNGG I+EANQV+FILESLPKSFIPFQTNASL KIEF
Subjt:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
TYK16012.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-7280.56Show/hide
Query:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSRK----------KAHVYILASMSDVLAKKHESLATTKKIIDSLKG
        MN  IVQLLASEKLNGDNY  WK  LNTILVVD+LRFVLTEECPQTPASN NRTSRK          K  VYILASMSDVLAKKHESLATTK+ +DSLKG
Subjt:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSRK----------KAHVYILASMSDVLAKKHESLATTKKIIDSLKG

Query:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
        MFGQQEWS+RHE  KYIYTKRMKE TS+REHVLDMMMH NI +VNGG I+EANQV+FILESLPKSFIPFQTNASL KIEF
Subjt:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
TrEMBL top hitse value%identityAlignment
A0A5A7T0E9 Gag/pol protein2.2e-7280.56Show/hide
Query:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSR----------KKAHVYILASMSDVLAKKHESLATTKKIIDSLKG
        MN  IVQLLAS+KLNGDNYA WK  LNTILVVDDLRF+LTEECPQTP SNANR SR          +KA VYILASMSDVLAKKHE LATTK+I+DSLKG
Subjt:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSR----------KKAHVYILASMSDVLAKKHESLATTKKIIDSLKG

Query:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
        MFGQ EWS+RHE IKYIYTKRMK+ TS+REHVLDMMMH NI EVNGGAIDEANQV+FILESL KSFIPFQTNASL KIEF
Subjt:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
A0A5A7TWX1 Gag/pol protein2.2e-7281.67Show/hide
Query:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSR----------KKAHVYILASMSDVLAKKHESLATTKKIIDSLKG
        MN LIVQLLASEKLN DNY  WK  LNTILVVDDLRFVLTEECPQTPASNANRTSR          +KA VYILASMSDVLAKKHESLAT K+I+DSLKG
Subjt:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSR----------KKAHVYILASMSDVLAKKHESLATTKKIIDSLKG

Query:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
        MFGQ +WS+RH+ IKYIYTKRMKE TSIREHVL MM+H NIAEVNGGAIDEANQV+FILESLPKSFIPFQTN SL KIEF
Subjt:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
A0A5A7UH70 Gag/pol protein1.2e-7382.78Show/hide
Query:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSRK----------KAHVYILASMSDVLAKKHESLATTKKIIDSLKG
        MN  IVQLLASEKLNGDNYAAWK  LNTILVVDDLRF+LT+ECPQTP SNANR SRK          K  VYILASMSDVLAKK+ESLAT K+IIDSLKG
Subjt:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSRK----------KAHVYILASMSDVLAKKHESLATTKKIIDSLKG

Query:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
        MFGQ EWS+RHE IKYIYTKRMKE TS+REHVLDMMMH NIAEVNGGAIDEANQVNFILESL KSFIPFQTNASL KIEF
Subjt:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
A0A5A7VF40 Gag/pol protein1.7e-7280.56Show/hide
Query:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSRK----------KAHVYILASMSDVLAKKHESLATTKKIIDSLKG
        MN  IVQLLASEKLNGDNY  WK  LNTILVVD+LRFVLTEECPQTPASN NRTSRK          K  VYILASMSDVLAKKHESLATTK+ +DSLKG
Subjt:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSRK----------KAHVYILASMSDVLAKKHESLATTKKIIDSLKG

Query:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
        MFGQQEWS+RHE  KYIYTKRMKE TS+REHVLDMMMH NI +VNGG I+EANQV+FILESLPKSFIPFQTNASL KIEF
Subjt:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
A0A5D3CWV9 Gag/pol protein1.7e-7280.56Show/hide
Query:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSRK----------KAHVYILASMSDVLAKKHESLATTKKIIDSLKG
        MN  IVQLLASEKLNGDNY  WK  LNTILVVD+LRFVLTEECPQTPASN NRTSRK          K  VYILASMSDVLAKKHESLATTK+ +DSLKG
Subjt:  MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSRK----------KAHVYILASMSDVLAKKHESLATTKKIIDSLKG

Query:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
        MFGQQEWS+RHE  KYIYTKRMKE TS+REHVLDMMMH NI +VNGG I+EANQV+FILESLPKSFIPFQTNASL KIEF
Subjt:  MFGQQEWSVRHETIKYIYTKRMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGGCTTGATAGTTCAATTATTAGCTTCCGAAAAACTTAACGGCGATAATTATGCGGCATGGAAATTGTATCTTAACACGATACTAGTGGTTGATGATTTAAGGTT
TGTCTTAACTGAGGAATGTCCTCAAACCCCTGCCTCAAATGCGAATCGAACTAGTCGGAAAAAAGCCCATGTCTACATCCTTGCTAGCATGTCTGATGTTTTAGCAAAGA
AACATGAATCCTTAGCCACGACTAAAAAGATAATTGATTCATTAAAAGGAATGTTTGGGCAACAAGAATGGTCCGTAAGACACGAGACAATTAAATACATTTACACTAAG
CGAATGAAGGAGGAGACCTCTATTAGAGAACATGTCCTGGACATGATGATGCACTTGAATATTGCTGAGGTAAATGGTGGTGCCATCGATGAGGCTAATCAGGTTAACTT
TATCTTAGAGTCTCTTCCGAAGAGCTTCATACCATTTCAAACAAATGCGTCCCTCAAGAAGATAGAGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGGCTTGATAGTTCAATTATTAGCTTCCGAAAAACTTAACGGCGATAATTATGCGGCATGGAAATTGTATCTTAACACGATACTAGTGGTTGATGATTTAAGGTT
TGTCTTAACTGAGGAATGTCCTCAAACCCCTGCCTCAAATGCGAATCGAACTAGTCGGAAAAAAGCCCATGTCTACATCCTTGCTAGCATGTCTGATGTTTTAGCAAAGA
AACATGAATCCTTAGCCACGACTAAAAAGATAATTGATTCATTAAAAGGAATGTTTGGGCAACAAGAATGGTCCGTAAGACACGAGACAATTAAATACATTTACACTAAG
CGAATGAAGGAGGAGACCTCTATTAGAGAACATGTCCTGGACATGATGATGCACTTGAATATTGCTGAGGTAAATGGTGGTGCCATCGATGAGGCTAATCAGGTTAACTT
TATCTTAGAGTCTCTTCCGAAGAGCTTCATACCATTTCAAACAAATGCGTCCCTCAAGAAGATAGAGTTCTGA
Protein sequenceShow/hide protein sequence
MNGLIVQLLASEKLNGDNYAAWKLYLNTILVVDDLRFVLTEECPQTPASNANRTSRKKAHVYILASMSDVLAKKHESLATTKKIIDSLKGMFGQQEWSVRHETIKYIYTK
RMKEETSIREHVLDMMMHLNIAEVNGGAIDEANQVNFILESLPKSFIPFQTNASLKKIEF