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Pay0001233 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0001233
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReverse transcriptase
Genome locationchr01:13451575..13452034
RNA-Seq ExpressionPay0001233
SyntenyPay0001233
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008194 - UDP-glycosyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031437.1 pol protein [Cucumis melo var. makuwa]3.5e-7999.34Show/hide
Query:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
        YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQ+SENLSYE
Subjt:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE

Query:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

KAA0032541.1 pol protein [Cucumis melo var. makuwa]2.7e-79100Show/hide
Query:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
        YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
Subjt:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE

Query:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

KAA0048651.1 pol protein [Cucumis melo var. makuwa]2.7e-79100Show/hide
Query:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
        YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
Subjt:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE

Query:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

KAA0061201.1 pol protein [Cucumis melo var. makuwa]2.7e-79100Show/hide
Query:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
        YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
Subjt:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE

Query:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

KAA0063116.1 pol protein [Cucumis melo var. makuwa]2.7e-79100Show/hide
Query:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
        YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
Subjt:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE

Query:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

TrEMBL top hitse value%identityAlignment
A0A5A7SSL3 Reverse transcriptase1.3e-79100Show/hide
Query:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
        YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
Subjt:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE

Query:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

A0A5A7U4Z5 Pol protein1.3e-79100Show/hide
Query:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
        YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
Subjt:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE

Query:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

A0A5A7V5X5 Pol protein1.3e-79100Show/hide
Query:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
        YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
Subjt:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE

Query:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

A0A5A7V9J8 Pol protein1.3e-79100Show/hide
Query:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
        YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
Subjt:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE

Query:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

A0A5D3CQB5 Reverse transcriptase1.7e-7999.34Show/hide
Query:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE
        YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQ+SENLSYE
Subjt:  YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYE

Query:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  EQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein4.1e-0640Show/hide
Query:  YADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY
        Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L KY
Subjt:  YADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY

P0CT35 Transposon Tf2-2 polyprotein4.1e-0640Show/hide
Query:  YADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY
        Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L KY
Subjt:  YADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY

P0CT36 Transposon Tf2-3 polyprotein4.1e-0640Show/hide
Query:  YADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY
        Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L KY
Subjt:  YADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY

P0CT41 Transposon Tf2-12 polyprotein4.1e-0640Show/hide
Query:  YADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY
        Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L KY
Subjt:  YADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY

Q9UR07 Transposon Tf2-11 polyprotein4.1e-0640Show/hide
Query:  YADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY
        Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ GP  Y L LP S   +    FH+S L KY
Subjt:  YADVRRKDL-EFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAV-HDVFHISMLRKY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATGCTGATGTACGACGTAAGGACCTCGAGTTTGAAGTGGGAGATATGGTCTTTCTGAAGGTTGCACCCATGAAGGGTGTTCTGAGGTTCGCGAAGAAGGGGAAGCTAAG
TCCACGCTTCGTAGGGCCGTTCGAGATACTGGAGCGGATTGGCCCCGTGGCTTATCGTTTGGCGCTACCCCCATCTTTTGCTGCAGTGCACGACGTATTCCATATCTCCA
TGCTGAGGAAATACGTCGCAGACCCAACACACGTGGTGGACTTCGAGCCACTGCAGATTAGCGAGAATCTGAGCTACGAGGAGCAGCCTGTCGAGGTCTTGGCAAGGGAG
GTCAAGAAGCTTCGCAGTCGAGAAATTCCACTGGTCAAAATCCTTTGGCAGAACCATGGAGTGGAAGAGGCCACGTGGGAGAAAGAAGAGGATATGAGAGCCCAGTACCC
CGAGCTGTTCGAAGATTAG
mRNA sequenceShow/hide mRNA sequence
TTATGCTGATGTACGACGTAAGGACCTCGAGTTTGAAGTGGGAGATATGGTCTTTCTGAAGGTTGCACCCATGAAGGGTGTTCTGAGGTTCGCGAAGAAGGGGAAGCTAA
GTCCACGCTTCGTAGGGCCGTTCGAGATACTGGAGCGGATTGGCCCCGTGGCTTATCGTTTGGCGCTACCCCCATCTTTTGCTGCAGTGCACGACGTATTCCATATCTCC
ATGCTGAGGAAATACGTCGCAGACCCAACACACGTGGTGGACTTCGAGCCACTGCAGATTAGCGAGAATCTGAGCTACGAGGAGCAGCCTGTCGAGGTCTTGGCAAGGGA
GGTCAAGAAGCTTCGCAGTCGAGAAATTCCACTGGTCAAAATCCTTTGGCAGAACCATGGAGTGGAAGAGGCCACGTGGGAGAAAGAAGAGGATATGAGAGCCCAGTACC
CCGAGCTGTTCGAAGATTAG
Protein sequenceShow/hide protein sequence
YADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLARE
VKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED