; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0001292 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0001292
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReverse transcriptase
Genome locationchr05:15026120..15026812
RNA-Seq ExpressionPay0001292
SyntenyPay0001292
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031931.1 pol protein [Cucumis melo var. makuwa]2.8e-12094.78Show/hide
Query:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR
        +VDT EVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPAELKELKVQLQELLDKGFIRPS+SP+GA VLFVKKKDGSMR
Subjt:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR

Query:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV
        LCIDYRELNKVTVKNRYPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMN+VFREFLDTFVIV
Subjt:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV

Query:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK
        FIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Subjt:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK

KAA0032356.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-12094.78Show/hide
Query:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR
        +VDT EVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP+GA +LFVKKKDGSMR
Subjt:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR

Query:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV
        LCIDYRELNKVTVKNRYPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMN+VFREFLDTFVIV
Subjt:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV

Query:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK
        FIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Subjt:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK

KAA0037244.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-12095.22Show/hide
Query:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR
        +VDT EVDVSLSLEPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMR
Subjt:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR

Query:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV
        LCIDYRELNKVTVKNRYPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMN+VFREFLDTFVIV
Subjt:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV

Query:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK
        FIDDILIYSKTE EHEEHLRMVLQTLRDNK
Subjt:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK

KAA0047194.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-12095.22Show/hide
Query:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR
        +VDT EVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMR
Subjt:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR

Query:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV
        LCIDYRELNKVTVKNRYPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMN+VFREFLDTFVIV
Subjt:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV

Query:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK
        FIDDILIYSK EAEHEEHLRMVLQTLRDNK
Subjt:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK

KAA0047433.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-12095.22Show/hide
Query:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR
        +VDT EVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMR
Subjt:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR

Query:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV
        LCIDYRELNKVTVKNRYPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMN+VFREFLDTFVIV
Subjt:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV

Query:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK
        FIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Subjt:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK

TrEMBL top hitse value%identityAlignment
A0A5A7SQP5 Ty3-gypsy retrotransposon protein7.8e-12194.78Show/hide
Query:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR
        +VDT EVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP+GA +LFVKKKDGSMR
Subjt:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR

Query:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV
        LCIDYRELNKVTVKNRYPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMN+VFREFLDTFVIV
Subjt:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV

Query:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK
        FIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Subjt:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK

A0A5A7SQU8 Reverse transcriptase1.3e-12094.78Show/hide
Query:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR
        +VDT EVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPAELKELKVQLQELLDKGFIRPS+SP+GA VLFVKKKDGSMR
Subjt:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR

Query:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV
        LCIDYRELNKVTVKNRYPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMN+VFREFLDTFVIV
Subjt:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV

Query:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK
        FIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Subjt:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK

A0A5A7T190 Reverse transcriptase1.0e-12095.22Show/hide
Query:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR
        +VDT EVDVSLSLEPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMR
Subjt:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR

Query:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV
        LCIDYRELNKVTVKNRYPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMN+VFREFLDTFVIV
Subjt:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV

Query:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK
        FIDDILIYSKTE EHEEHLRMVLQTLRDNK
Subjt:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK

A0A5A7TV57 Ty3-gypsy retrotransposon protein6.0e-12195.22Show/hide
Query:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR
        +VDT EVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMR
Subjt:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR

Query:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV
        LCIDYRELNKVTVKNRYPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMN+VFREFLDTFVIV
Subjt:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV

Query:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK
        FIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Subjt:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK

A0A5A7TW65 DNA/RNA polymerases superfamily protein7.8e-12195.22Show/hide
Query:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR
        +VDT EVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMR
Subjt:  MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMR

Query:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV
        LCIDYRELNKVTVKNRYPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMN+VFREFLDTFVIV
Subjt:  LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIV

Query:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK
        FIDDILIYSK EAEHEEHLRMVLQTLRDNK
Subjt:  FIDDILIYSKTEAEHEEHLRMVLQTLRDNK

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein7.2e-3936.36Show/hide
Query:  LEPVVRDYPDVF----SEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYREL
        L  + +++ D+     +E+LP   P + +EF +EL      +    Y + P +++ +  ++ + L  G IR S +     V+FV KK+G++R+ +DY+ L
Subjt:  LEPVVRDYPDVF----SEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYREL

Query:  NKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIVFIDDILIY
        NK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N +  E  ++ V+ ++DDILI+
Subjt:  NKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIVFIDDILIY

Query:  SKTEAEHEEHLRMVLQTLRD
        SK+E+EH +H++ VLQ L++
Subjt:  SKTEAEHEEHLRMVLQTLRD

P0CT35 Transposon Tf2-2 polyprotein7.2e-3936.36Show/hide
Query:  LEPVVRDYPDVF----SEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYREL
        L  + +++ D+     +E+LP   P + +EF +EL      +    Y + P +++ +  ++ + L  G IR S +     V+FV KK+G++R+ +DY+ L
Subjt:  LEPVVRDYPDVF----SEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYREL

Query:  NKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIVFIDDILIY
        NK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N +  E  ++ V+ ++DDILI+
Subjt:  NKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIVFIDDILIY

Query:  SKTEAEHEEHLRMVLQTLRD
        SK+E+EH +H++ VLQ L++
Subjt:  SKTEAEHEEHLRMVLQTLRD

P0CT41 Transposon Tf2-12 polyprotein7.2e-3936.36Show/hide
Query:  LEPVVRDYPDVF----SEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYREL
        L  + +++ D+     +E+LP   P + +EF +EL      +    Y + P +++ +  ++ + L  G IR S +     V+FV KK+G++R+ +DY+ L
Subjt:  LEPVVRDYPDVF----SEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYREL

Query:  NKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIVFIDDILIY
        NK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N +  E  ++ V+ ++DDILI+
Subjt:  NKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIVFIDDILIY

Query:  SKTEAEHEEHLRMVLQTLRD
        SK+E+EH +H++ VLQ L++
Subjt:  SKTEAEHEEHLRMVLQTLRD

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.0e-4041.51Show/hide
Query:  YPDVFSEELPGLPP---HREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNR
        Y ++   +LP  P    +  ++  IE++PG       PY +     +E+   +Q+LLD  FI PS SP  + V+ V KKDG+ RLC+DYR LNK T+ + 
Subjt:  YPDVFSEELPGLPP---HREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNR

Query:  YPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHE
        +PLP+ID+L  ++  A +F+ +DL SGYHQ+ ++  D  KTAF +  G YE+ VM FGL NAP+ F   M   FR+    FV V++DDILI+S++  EH 
Subjt:  YPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHE

Query:  EHLRMVLQTLRD
        +HL  VL+ L++
Subjt:  EHLRMVLQTLRD

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.0e-4041.51Show/hide
Query:  YPDVFSEELPGLPP---HREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNR
        Y ++   +LP  P    +  ++  IE++PG       PY +     +E+   +Q+LLD  FI PS SP  + V+ V KKDG+ RLC+DYR LNK T+ + 
Subjt:  YPDVFSEELPGLPP---HREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNR

Query:  YPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHE
        +PLP+ID+L  ++  A +F+ +DL SGYHQ+ ++  D  KTAF +  G YE+ VM FGL NAP+ F   M   FR+    FV V++DDILI+S++  EH 
Subjt:  YPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHE

Query:  EHLRMVLQTLRD
        +HL  VL+ L++
Subjt:  EHLRMVLQTLRD

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGATACTGGAGAGGTTGATGTATCCCTGTCATTAGAACCAGTGGTAAGGGACTATCCGGATGTTTTTTCTGAAGAGCTTCCAGGGTTACCTCCTCATAGAGAGAT
TGAGTTTGCCATAGAGCTGGAGCCAGGTACGATTCCTATATCCAGAGCCCCATACAGAATGGCCCCAGCAGAATTGAAGGAACTGAAAGTGCAGCTACAGGAGTTGCTTG
ATAAAGGCTTCATTCGACCGAGTGTGTCACCTTTTGGTGCGGTAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGCCTATGCATTGACTATAGGGAGTTGAATAAG
GTAACCGTTAAGAACAGATATCCCTTGCCCAAGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGATCAGGATATCATCAGCT
GAGGATTAAGGATGGTGATGTACCGAAGACAGCCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTTATGG
ACTTGATGAACAAAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGT
ATGGTTCTGCAAACCCTTCGGGATAATAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGATACTGGAGAGGTTGATGTATCCCTGTCATTAGAACCAGTGGTAAGGGACTATCCGGATGTTTTTTCTGAAGAGCTTCCAGGGTTACCTCCTCATAGAGAGAT
TGAGTTTGCCATAGAGCTGGAGCCAGGTACGATTCCTATATCCAGAGCCCCATACAGAATGGCCCCAGCAGAATTGAAGGAACTGAAAGTGCAGCTACAGGAGTTGCTTG
ATAAAGGCTTCATTCGACCGAGTGTGTCACCTTTTGGTGCGGTAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGCCTATGCATTGACTATAGGGAGTTGAATAAG
GTAACCGTTAAGAACAGATATCCCTTGCCCAAGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGATCAGGATATCATCAGCT
GAGGATTAAGGATGGTGATGTACCGAAGACAGCCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTTATGG
ACTTGATGAACAAAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGT
ATGGTTCTGCAAACCCTTCGGGATAATAAATGA
Protein sequenceShow/hide protein sequence
MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNK
VTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR
MVLQTLRDNK