CuGenDBv2

Gene ID	Pay0001331
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ribonuclease H
Genome location	chr06:24252837..24253400
RNA-Seq Expression	Pay0001331
Synteny	Pay0001331
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]

1.7e-90

89.84

Show/hide

Query:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
        MRIDFPDDNIFLVEKN R                 H IGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
Subjt:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE

Query:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
        EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
Subjt:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ

KAA0038144.1 protein NYNRIN-like [Cucumis melo var. makuwa]

1.5e-86

86.1

Show/hide

Query:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
        MRIDFPD+NIFLV+KN R                 HGIGVVLISPEG VFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
Subjt:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE

Query:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
        EW+TR AKL PYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITK+DVPAYCMNVGNDN PWYFDIKQ
Subjt:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ

KAA0046213.1 uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa]

1.3e-90

89.3

Show/hide

Query:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
        MRIDFPDDNIFLVEKN R                 HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGL+VACDMSIKKLKVLGDSMLVIHQVKE
Subjt:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE

Query:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
        EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLA+MFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
Subjt:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ

KAA0055609.1 uncharacterized protein E6C27_scaffold222G00930 [Cucumis melo var. makuwa]

1.3e-87

87.17

Show/hide

Query:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
        MRIDFP++NIFLVEKN R                 HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
Subjt:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE

Query:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
        EWETR AKLVPYSQYVTKLSQNFEKI FDHVPRE+N+MADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
Subjt:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ

TYK24459.1 uncharacterized protein E5676_scaffold717G00160 [Cucumis melo var. makuwa]

2.2e-90

89.84

Show/hide

Query:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
        MRIDFPDDNIFLVEKN R                 HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
Subjt:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE

Query:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
        EWETR AKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
Subjt:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T3U9 Protein NYNRIN-like

7.1e-87

86.1

Show/hide

Query:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
        MRIDFPD+NIFLV+KN R                 HGIGVVLISPEG VFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
Subjt:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE

Query:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
        EW+TR AKL PYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITK+DVPAYCMNVGNDN PWYFDIKQ
Subjt:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ

A0A5A7T7R4 Ribonuclease H

8.1e-91

89.84

Show/hide

Query:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
        MRIDFPDDNIFLVEKN R                 H IGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
Subjt:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE

Query:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
        EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
Subjt:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ

A0A5A7TRL7 Ribonuclease H

6.2e-91

89.3

Show/hide

Query:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
        MRIDFPDDNIFLVEKN R                 HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGL+VACDMSIKKLKVLGDSMLVIHQVKE
Subjt:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE

Query:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
        EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLA+MFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
Subjt:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ

A0A5A7UQ60 Ribonuclease H

6.4e-88

87.17

Show/hide

Query:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
        MRIDFP++NIFLVEKN R                 HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
Subjt:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE

Query:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
        EWETR AKLVPYSQYVTKLSQNFEKI FDHVPRE+N+MADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
Subjt:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ

A0A5D3DMD2 Ribonuclease H

1.1e-90

89.84

Show/hide

Query:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
        MRIDFPDDNIFLVEKN R                 HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE
Subjt:  MRIDFPDDNIFLVEKNLR-----------------HGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKE

Query:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
        EWETR AKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ
Subjt:  EWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ

SwissProt top hits

e value

%identity

Alignment

P64956 Uncharacterized protein Mb2253c

2.8e-08

35.63

Show/hide

Query:  THNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAV
        T+N+AEY   I GL  A  +   +  VL DS LV+ Q+   W+ +H  L+        L+  F +I+++ VPR  N  AD LA  A+
Subjt:  THNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAV

P9WLH4 Uncharacterized protein MT2287

2.8e-08

35.63

Show/hide

Query:  THNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAV
        T+N+AEY   I GL  A  +   +  VL DS LV+ Q+   W+ +H  L+        L+  F +I+++ VPR  N  AD LA  A+
Subjt:  THNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAV

P9WLH5 Bifunctional protein Rv2228c

2.8e-08

35.63

Show/hide

Query:  THNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAV
        T+N+AEY   I GL  A  +   +  VL DS LV+ Q+   W+ +H  L+        L+  F +I+++ VPR  N  AD LA  A+
Subjt:  THNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAV

Arabidopsis top hits

e value

%identity

Alignment

AT1G24090.1 RNase H family protein

3.1e-10

34.23

Show/hide

Query:  GIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDN
        G   VL + +G +     +     T+N AEY A I+GL+ A +   K +KV GDS LV  Q+K +W+  H  L    +    L          HV R  N
Subjt:  GIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDN

Query:  RMADALATLAV
          AD  A LAV
Subjt:  RMADALATLAV

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

1.6e-14

36.04

Show/hide

Query:  GIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDN
        G G VL + +  V     +     T+N+AEY A ++GL+ A D   K + VLGDSMLV  QV+  W+T H K+    +   +L  +F+     H+ RE N
Subjt:  GIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDN

Query:  RMADALATLAV
          AD  A  A+
Subjt:  RMADALATLAV

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

1.6e-14

36.04

Show/hide

Query:  GIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDN
        G G VL + +  V     +     T+N+AEY A ++GL+ A D   K + VLGDSMLV  QV+  W+T H K+    +   +L  +F+     H+ RE N
Subjt:  GIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDN

Query:  RMADALATLAV
          AD  A  A+
Subjt:  RMADALATLAV

AT5G51080.1 RNase H family protein

6.5e-08

31.82

Show/hide

Query:  GIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDN
        G   VL + +G +     +     T+N AEY   I+GL+ A +    K+KV  DS LV  Q+K +W+  H  L    +   +LS         HV R  N
Subjt:  GIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDN

Query:  RMADALATLA
          AD  A +A
Subjt:  RMADALATLA

AT5G51080.2 RNase H family protein

6.5e-08

31.82

Show/hide

Query:  GIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDN
        G   VL + +G +     +     T+N AEY   I+GL+ A +    K+KV  DS LV  Q+K +W+  H  L    +   +LS         HV R  N
Subjt:  GIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDN

Query:  RMADALATLA
          AD  A +A
Subjt:  RMADALATLA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGGATTGATTTCCCGGATGATAACATATTTCTAGTTGAAAAGAATTTGAGACATGGGATTGGAGTTGTGCTAATTTCTCCAGAAGGAAAGGTTTTCCCCCTAACGGC
CAAGTTATGTTTTGAATGCACTCACAATATCGCTGAATATGAAGCTTGCATTATGGGACTTCAAGTAGCATGTGATATGAGTATTAAAAAGTTGAAAGTTTTGGGTGACT
CGATGTTAGTGATACATCAAGTCAAGGAAGAATGGGAAACAAGACATGCTAAATTGGTACCTTACAGCCAATACGTTACAAAATTGTCTCAAAATTTTGAGAAGATTTCA
TTTGACCATGTTCCTAGGGAAGACAATCGAATGGCGGATGCATTAGCCACTCTGGCAGTGATGTTTGATCTTAATCTTGAATTTGAACTTCATCCAATCCAAATTACAAA
GCGAGATGTGCCAGCATATTGCATGAATGTTGGAAATGATAACAAGCCATGGTATTTTGACATTAAGCAATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MRIDFPDDNIFLVEKNLRHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKIS
FDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQ

Pay0001331 (gene) of Melon (Payzawat) v1 genome