CuGenDBv2

Gene ID	Pay0001338
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Integrase
Genome location	chr02:12949998..12950730
RNA-Seq Expression	Pay0001338
Synteny	Pay0001338
Gene Ontology terms	GO:0006397 - mRNA processing (biological process) GO:0015074 - DNA integration (biological process) GO:0003729 - mRNA binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039947.1 integrase [Cucumis melo var. makuwa]

2.9e-67

99.24

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Query:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKI
        IGQLLQRGLKVSFEGDICAIKDQAGVLIAK+
Subjt:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKI

KAA0060377.1 integrase [Cucumis melo var. makuwa]

2.9e-67

99.24

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Query:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKI
        IGQLLQRGLKVSFEGDICAIKDQAGVLIAK+
Subjt:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKI

TYJ95504.1 integrase [Cucumis melo var. makuwa]

2.9e-67

99.24

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Query:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKI
        IGQLLQRGLKVSFEGDICAIKDQAGVLIAK+
Subjt:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKI

TYK30104.1 integrase [Cucumis melo var. makuwa]

2.9e-67

99.24

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Query:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKI
        IGQLLQRGLKVSFEGDICAIKDQAGVLIAK+
Subjt:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKI

XP_008462674.1 PREDICTED: uncharacterized protein LOC103500978 [Cucumis melo]

9.8e-71

95.24

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Query:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKK DEGILFLACSVQDNV+EPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNT LQVKGQ DILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKICVVLCEQQQMEVIDIS
        IGQLLQRGLKVSFEGDICAIKDQ  VLIAKI VVLCEQQQMEVIDIS
Subjt:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKICVVLCEQQQMEVIDIS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CI07 uncharacterized protein LOC103500978

4.7e-71

95.24

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Query:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKK DEGILFLACSVQDNV+EPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNT LQVKGQ DILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKICVVLCEQQQMEVIDIS
        IGQLLQRGLKVSFEGDICAIKDQ  VLIAKI VVLCEQQQMEVIDIS
Subjt:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKICVVLCEQQQMEVIDIS

A0A5A7UZJ8 Integrase

1.4e-67

99.24

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Query:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKI
        IGQLLQRGLKVSFEGDICAIKDQAGVLIAK+
Subjt:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKI

A0A5D3BQ81 Integrase

1.4e-67

99.24

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Query:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKI
        IGQLLQRGLKVSFEGDICAIKDQAGVLIAK+
Subjt:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKI

A0A5D3CLV1 Integrase

1.4e-67

99.24

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Query:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKI
        IGQLLQRGLKVSFEGDICAIKDQAGVLIAK+
Subjt:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKI

A0A5D3E3T2 Integrase

1.4e-67

99.24

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Query:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKI
        IGQLLQRGLKVSFEGDICAIKDQAGVLIAK+
Subjt:  IGQLLQRGLKVSFEGDICAIKDQAGVLIAKI

SwissProt top hits

e value

%identity

Alignment

P25601 Putative transposon Ty5-1 protein YCL075W

9.7e-05

33.33

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Query:  WYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSI
        W  D+GC++HM  +RSIF +   S + +   G    + + G G + +    GT ++ +V YVP L  NL+S+
Subjt:  WYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSI

Arabidopsis top hits

e value

%identity

Alignment

AT3G20980.1 Gag-Pol-related retrotransposon family protein

9.9e-13

43.01

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Query:  EPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVK--TGD---NTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFE
        E  W + S  SNHMT +   F TLD S + +VK  +GD    T   V+G GD+   T +G K + NV YVPG++ N LS+ QL + G +VS E
Subjt:  EPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVK--TGD---NTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFE

AT3G21000.1 Gag-Pol-related retrotransposon family protein

2.1e-10

36.9

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Query:  WYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKR-VTNVFYVPGLKHNLLSIGQLLQRGLKVS
        W +      +MT     F TLD +F++ V T D T L V+G+GD+ ++ K+G K+ + NV +VPGL  N+LS G+++ +   +S
Subjt:  WYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKR-VTNVFYVPGLKHNLLSIGQLLQRGLKVS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAATATGCATAAAGAACAAAAGAAAATTGATGAAGGCATTCTATTCCTCGCATGTAGTGTTCAAGACAATGTTGTAGAGCCTACATGGTATCTTGATAGTGGTTGTAG
CAACCACATGACAGGAAATAGAAGTATATTTGTTACTTTGGATGAATCTTTCCAAAGTGAAGTGAAGACTGGTGATAATACCAGACTACAAGTCAAAGGCCAAGGTGATA
TTCTTGTGAAGACAAAGAAAGGGACAAAACGAGTTACAAATGTGTTCTATGTTCCAGGTCTAAAGCATAATCTTTTGAGTATTGGCCAACTGCTTCAACGAGGTTTAAAA
GTTTCATTTGAAGGTGACATATGTGCAATCAAAGATCAGGCCGGTGTTCTTATTGCCAAGATTTGTGTGGTCCTATGCGAACAACAACAAATGGAGGTAATCGATATTTC
ATAA

mRNA sequence

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Protein sequence

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MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLK
VSFEGDICAIKDQAGVLIAKICVVLCEQQQMEVIDIS

Pay0001338 (gene) of Melon (Payzawat) v1 genome