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Pay0001427 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0001427
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGag-pol polyprotein
Genome locationchr04:15225720..15226238
RNA-Seq ExpressionPay0001427
SyntenyPay0001427
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033522.1 gag-pol polyprotein [Cucumis melo var. makuwa]4.8e-6078.62Show/hide
Query:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC
        MEIIREGPS SRPPVLD                  DG+AWRALVAGYDPPMIT+NGVSVPKPEVDWTD EEQ+FV NARALN IFNGVDLNVF+LINSC 
Subjt:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC

Query:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLL
        T KEAWKTLEVAYEGTSKVKISRLQLITSKFEALRM EDE VSDYNKRV EI N+ LLL
Subjt:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLL
KAA0040963.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.7e-6079.5Show/hide
Query:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC
        MEIIREGPSASR P+LD                  DGKAWRALVAGYDPPMITVNGV VPKPEVDWTD EEQA V NARALN IFN VDLNVF+LINSC 
Subjt:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC

Query:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLLGE
        T+KEAWKTLEVAYEGTSKVKISRLQLITSKFEALRM EDESVSDYNKRV EI NKSLLL E
Subjt:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLLGE
KAA0056213.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.7e-6078.88Show/hide
Query:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC
        MEIIREGPSASRPPVLD                  DGKAWRALVAGYDPPMIT NGVSVPK EVDWTD EEQA V NARA N IFNGVDLN+F+LINSC 
Subjt:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC

Query:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLLGE
        T KEAWKTLEVAYEGTSKVKISRLQLITSKFEALRM EDESV DYNKRV EI N+SLLLGE
Subjt:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLLGE
TYK02457.1 gag-proteinase polyprotein [Cucumis melo var. makuwa]7.4e-6180.75Show/hide
Query:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC
        MEIIREGPSASR PVLD                  DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTD EEQA V NARALNTIFNGVDLNVF+LINSC 
Subjt:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC

Query:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLLGE
        T KEAWKTLEVA EGTSKVKISRLQLIT KFEALRM EDESVSDYNKRV EI N+SLLLGE
Subjt:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLLGE
TYK05804.1 gag-pol polyprotein [Cucumis melo var. makuwa]5.3e-5977.02Show/hide
Query:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC
        MEIIREGPSASRPP+LD                  DGKAWRALVAGYDP MITVNG+SVPKPEVDWTD EEQA V NARALN IFNGVDLN+F+LINSC 
Subjt:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC

Query:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLLGE
        T KEAWKTLEVAY+GT KVKISRLQLI SKFEALRMIEDESV DYNKRV EI N+SL+LGE
Subjt:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLLGE
TrEMBL top hitse value%identityAlignment
A0A5A7TCV9 Gag-pol polyprotein1.8e-6079.5Show/hide
Query:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC
        MEIIREGPSASR P+LD                  DGKAWRALVAGYDPPMITVNGV VPKPEVDWTD EEQA V NARALN IFN VDLNVF+LINSC 
Subjt:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC

Query:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLLGE
        T+KEAWKTLEVAYEGTSKVKISRLQLITSKFEALRM EDESVSDYNKRV EI NKSLLL E
Subjt:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLLGE
A0A5A7UJR8 Putative mitochondrial protein1.8e-6078.88Show/hide
Query:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC
        MEIIREGPSASRPPVLD                  DGKAWRALVAGYDPPMIT NGVSVPK EVDWTD EEQA V NARA N IFNGVDLN+F+LINSC 
Subjt:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC

Query:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLLGE
        T KEAWKTLEVAYEGTSKVKISRLQLITSKFEALRM EDESV DYNKRV EI N+SLLLGE
Subjt:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLLGE
A0A5D3B9V9 Gag-pol polyprotein2.3e-6078.62Show/hide
Query:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC
        MEIIREGPS SRPPVLD                  DG+AWRALVAGYDPPMIT+NGVSVPKPEVDWTD EEQ+FV NARALN IFNGVDLNVF+LINSC 
Subjt:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC

Query:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLL
        T KEAWKTLEVAYEGTSKVKISRLQLITSKFEALRM EDE VSDYNKRV EI N+ LLL
Subjt:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLL
A0A5D3BSP9 Gag-proteinase polyprotein3.6e-6180.75Show/hide
Query:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC
        MEIIREGPSASR PVLD                  DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTD EEQA V NARALNTIFNGVDLNVF+LINSC 
Subjt:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC

Query:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLLGE
        T KEAWKTLEVA EGTSKVKISRLQLIT KFEALRM EDESVSDYNKRV EI N+SLLLGE
Subjt:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLLGE
A0A5D3DER3 Gag-pol polyprotein2.6e-5977.64Show/hide
Query:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC
        MEIIREGPSASRP +LD                  DGKAWRALVAGY+PPMITVNGVSVPKPEVDWTD EEQA V NA+ALN+IFNGVDLN+F+LINS  
Subjt:  MEIIREGPSASRPPVLD------------------DGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCC

Query:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLLGE
        TTKEAWKTLEVAYEGTSKVKIS LQLITSKFEALRM +DESVSDYNKRV EI N+SLLLGE
Subjt:  TTKEAWKTLEVAYEGTSKVKISRLQLITSKFEALRMIEDESVSDYNKRVFEITNKSLLLGE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATAATCAGAGAAGGACCATCTGCATCACGTCCCCCTGTTTTAGATGATGGAAAAGCTTGGAGAGCTCTTGTGGCGGGTTATGATCCTCCTATGATTACCGTGAA
TGGTGTCTCAGTTCCAAAACCTGAAGTTGATTGGACTGATGATGAAGAGCAAGCTTTTGTTGAGAATGCCAGAGCACTTAACACGATATTTAATGGTGTTGACCTAAACG
TTTTCGAGTTAATAAATTCTTGCTGTACAACCAAAGAAGCTTGGAAAACCTTGGAGGTAGCGTATGAAGGTACTTCCAAAGTAAAGATTTCAAGATTACAGTTGATAACA
TCTAAGTTTGAGGCATTAAGAATGATCGAGGATGAATCAGTGTCTGATTACAATAAGAGAGTGTTTGAAATCACAAATAAATCCTTGCTGCTCGGTGAAAATGAAAATCG
TATACATGTGAAAAATTATATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATAATCAGAGAAGGACCATCTGCATCACGTCCCCCTGTTTTAGATGATGGAAAAGCTTGGAGAGCTCTTGTGGCGGGTTATGATCCTCCTATGATTACCGTGAA
TGGTGTCTCAGTTCCAAAACCTGAAGTTGATTGGACTGATGATGAAGAGCAAGCTTTTGTTGAGAATGCCAGAGCACTTAACACGATATTTAATGGTGTTGACCTAAACG
TTTTCGAGTTAATAAATTCTTGCTGTACAACCAAAGAAGCTTGGAAAACCTTGGAGGTAGCGTATGAAGGTACTTCCAAAGTAAAGATTTCAAGATTACAGTTGATAACA
TCTAAGTTTGAGGCATTAAGAATGATCGAGGATGAATCAGTGTCTGATTACAATAAGAGAGTGTTTGAAATCACAAATAAATCCTTGCTGCTCGGTGAAAATGAAAATCG
TATACATGTGAAAAATTATATATGA
Protein sequenceShow/hide protein sequence
MEIIREGPSASRPPVLDDGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDDEEQAFVENARALNTIFNGVDLNVFELINSCCTTKEAWKTLEVAYEGTSKVKISRLQLIT
SKFEALRMIEDESVSDYNKRVFEITNKSLLLGENENRIHVKNYI