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Pay0001470 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0001470
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionpolyadenylate-binding protein 1-like
Genome locationchr03:19604671..19605081
RNA-Seq ExpressionPay0001470
SyntenyPay0001470
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026054.1 polyadenylate-binding protein 1-like [Cucumis melo var. makuwa]6.1e-2994.37Show/hide
Query:  MELDLQVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        MELDLQVD A TP+EVQQHFQSCGTVNRVTILT+KFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  MELDLQVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

KAA0060499.1 polyadenylate-binding protein 3-like isoform X2 [Cucumis melo var. makuwa]5.2e-2896.97Show/hide
Query:  QVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        QVD ACTP+EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  QVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

RYR64526.1 hypothetical protein Ahy_A03g010619 isoform B [Arachis hypogaea]4.0e-2887.67Show/hide
Query:  MELDLQVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        M L L+VD ACTP+EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVE EAVQEAL+LNE+ELHGRQLKV P
Subjt:  MELDLQVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

TYK22852.1 polyadenylate-binding protein 3-like isoform X2 [Cucumis melo var. makuwa]8.5e-3197.18Show/hide
Query:  MELDLQVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        MELDLQVD ACTP+EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  MELDLQVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

XP_008464885.1 PREDICTED: polyadenylate-binding protein 1-like [Cucumis melo]8.2e-4294.57Show/hide
Query:  MELDLQVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAPWGKMIYVSILSSSTKVNKV
        MELDLQVD ACTP+EV+QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNET+LHGRQLKVAPWGKMIYVSILSSSTK NKV
Subjt:  MELDLQVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAPWGKMIYVSILSSSTKVNKV

TrEMBL top hitse value%identityAlignment
A0A1S3CMM9 polyadenylate-binding protein 1-like4.0e-4294.57Show/hide
Query:  MELDLQVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAPWGKMIYVSILSSSTKVNKV
        MELDLQVD ACTP+EV+QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNET+LHGRQLKVAPWGKMIYVSILSSSTK NKV
Subjt:  MELDLQVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAPWGKMIYVSILSSSTKVNKV

A0A445DMX4 RRM domain-containing protein1.9e-2887.67Show/hide
Query:  MELDLQVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        M L L+VD ACTP+EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVE EAVQEAL+LNE+ELHGRQLKV P
Subjt:  MELDLQVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

A0A5A7SK28 Polyadenylate-binding protein 1-like3.0e-2994.37Show/hide
Query:  MELDLQVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        MELDLQVD A TP+EVQQHFQSCGTVNRVTILT+KFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  MELDLQVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

A0A5A7V432 Polyadenylate-binding protein 3-like isoform X22.5e-2896.97Show/hide
Query:  QVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        QVD ACTP+EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  QVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

A0A5D3DGW2 Polyadenylate-binding protein 3-like isoform X24.1e-3197.18Show/hide
Query:  MELDLQVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        MELDLQVD ACTP+EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  MELDLQVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

SwissProt top hitse value%identityAlignment
O14327 Polyadenylate-binding protein 25.0e-1866.18Show/hide
Query:  VDCACTPKEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        VD + TP+E+Q HF SCG+VNRVTIL DKF GHPKGFAY+EF E   V  ALLLN + LH R LKV P
Subjt:  VDCACTPKEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

Q93VI4 Polyadenylate-binding protein 13.5e-2784.85Show/hide
Query:  VDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA
        VD ACTP+EVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNE+ELHGRQ+KV+
Subjt:  VDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA

Q9DDY9 Polyadenylate-binding protein 2-A3.6e-1657.35Show/hide
Query:  VDCACTPKEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        VD   T +E++ HF  CG+VNRVTIL DKF GHPKGFAY+EF + E+V+ +L L+E+   GRQ+KV P
Subjt:  VDCACTPKEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

Q9FJN9 Polyadenylate-binding protein 27.8e-2787.69Show/hide
Query:  VDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        VD ACTP+EVQQHFQ+CGTV+RVTILTDKFG PKGFAYVEFVE EAVQEAL LNE+ELHGRQLKV
Subjt:  VDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

Q9LX90 Polyadenylate-binding protein 35.9e-2785.07Show/hide
Query:  VDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        VD ACTP+EVQ HFQ+CGTVNRVTIL DKFG PKGFAYVEFVE EAVQEAL LNE+ELHGRQLKV+P
Subjt:  VDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

Arabidopsis top hitse value%identityAlignment
AT5G10350.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.2e-2885.07Show/hide
Query:  VDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        VD ACTP+EVQ HFQ+CGTVNRVTIL DKFG PKGFAYVEFVE EAVQEAL LNE+ELHGRQLKV+P
Subjt:  VDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

AT5G10350.2 RNA-binding (RRM/RBD/RNP motifs) family protein4.2e-2885.07Show/hide
Query:  VDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        VD ACTP+EVQ HFQ+CGTVNRVTIL DKFG PKGFAYVEFVE EAVQEAL LNE+ELHGRQLKV+P
Subjt:  VDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

AT5G51120.1 polyadenylate-binding protein 12.5e-2884.85Show/hide
Query:  VDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA
        VD ACTP+EVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNE+ELHGRQ+KV+
Subjt:  VDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA

AT5G51120.2 polyadenylate-binding protein 12.5e-2884.85Show/hide
Query:  VDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA
        VD ACTP+EVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNE+ELHGRQ+KV+
Subjt:  VDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA

AT5G51120.3 polyadenylate-binding protein 12.5e-2884.85Show/hide
Query:  VDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA
        VD ACTP+EVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE EAVQ +L+LNE+ELHGRQ+KV+
Subjt:  VDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTGGACTTGCAGGTTGATTGTGCGTGTACACCTAAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACGGATAAATTTGG
TCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTGTTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTAGCTCCTT
GGGGAAAGATGATTTACGTTTCTATTCTATCAAGTTCAACAAAAGTGAACAAAGTTAATGAATTGGTATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTGGACTTGCAGGTTGATTGTGCGTGTACACCTAAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACGGATAAATTTGG
TCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTGTTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTAGCTCCTT
GGGGAAAGATGATTTACGTTTCTATTCTATCAAGTTCAACAAAAGTGAACAAAGTTAATGAATTGGTATATTGA
Protein sequenceShow/hide protein sequence
MELDLQVDCACTPKEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAPWGKMIYVSILSSSTKVNKVNELVY