CuGenDBv2

Gene ID	Pay0001521
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrotransposon protein
Genome location	chr03:10103562..10103990
RNA-Seq Expression	Pay0001521
Synteny	Pay0001521
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR027806 - Harbinger transposase-derived nuclease domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0047510.1 retrotransposon protein [Cucumis melo var. makuwa]

3.9e-55

79.29

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Query:  GYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREMTI
        GYYYLVDAG            GQRYHLQEWHG ENAPSTSK+FFNMKH SARNVI+RA  VLKG+WAILR KSYYPVEVQCRTILACCLLHNLINREMT 
Subjt:  GYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREMTI

Query:  FNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE
        F+I D+IDEV+ THAT+AADDIHYIETSNEW++WRDDLAE
Subjt:  FNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE

KAA0048281.1 retrotransposon protein [Cucumis melo var. makuwa]

1.5e-54

78.57

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Query:  GYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREMTI
        GYYYLVDAG            GQRYHLQEWHG ENAPST K+FFNMKHSSARNVI+R   VLKG+WAILR KSYYPVEVQCRTILACCLLHNLINREMT 
Subjt:  GYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREMTI

Query:  FNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE
        F+I D+IDEV+ THAT+AADDIHYIETSNEW++WRDDLAE
Subjt:  FNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE

KAA0068124.1 retrotransposon protein [Cucumis melo var. makuwa]

8.7e-55

79.29

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Query:  GYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREMTI
        GYYYLVDAG            GQRYHLQEW G ENAPSTSK+FFNMKHSSARNVI+RA  VLKG+WAILR KSYYPVEVQCRTILACCLLHNLINREMT 
Subjt:  GYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREMTI

Query:  FNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE
        F+I D+IDEV+ THAT+AADDIHYIETSNEW++WRDDLAE
Subjt:  FNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE

XP_008461892.1 PREDICTED: putative nuclease HARBI1 [Cucumis melo]

1.9e-54

76.6

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Query:  TGYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREMT
        +GYYYLVD G            GQRYHLQEWHGAENAP+TSK+FFNMKHSSARNVI+RA  VLKG+W ILR KSYY VEVQCRTILACCL+HNLINREM 
Subjt:  TGYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREMT

Query:  IFNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE
         F+I+DDIDEV+ TH TSA DDIHYIETSNEWTRWRDDL E
Subjt:  IFNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE

XP_016898979.1 PREDICTED: uncharacterized protein LOC107990391 [Cucumis melo]

1.4e-57

80.28

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Query:  MTGYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREM
        MTGYYYLVDAG            GQRYHLQEW GAENAPSTSK+FF+MKHSSARNVI+RA  VLKG+W ILR+KSYYPVEVQCRTILACCLLHNLINREM
Subjt:  MTGYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREM

Query:  TIFNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE
        T F+I+DDIDEV+FTHATS A DIHYIETSNEWT+WRDDLAE
Subjt:  TIFNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE

TrEMBL top hits

e value

%identity

Alignment

A0A1S4DSL6 uncharacterized protein LOC107990391

6.9e-58

80.28

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Query:  MTGYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREM
        MTGYYYLVDAG            GQRYHLQEW GAENAPSTSK+FF+MKHSSARNVI+RA  VLKG+W ILR+KSYYPVEVQCRTILACCLLHNLINREM
Subjt:  MTGYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREM

Query:  TIFNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE
        T F+I+DDIDEV+FTHATS A DIHYIETSNEWT+WRDDLAE
Subjt:  TIFNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE

A0A5A7TWH8 Retrotransposon protein

1.9e-55

79.29

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Query:  GYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREMTI
        GYYYLVDAG            GQRYHLQEWHG ENAPSTSK+FFNMKH SARNVI+RA  VLKG+WAILR KSYYPVEVQCRTILACCLLHNLINREMT 
Subjt:  GYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREMTI

Query:  FNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE
        F+I D+IDEV+ THAT+AADDIHYIETSNEW++WRDDLAE
Subjt:  FNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE

A0A5A7U3Z5 Retrotransposon protein

7.2e-55

78.57

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Query:  GYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREMTI
        GYYYLVDAG            GQRYHLQEWHG ENAPST K+FFNMKHSSARNVI+R   VLKG+WAILR KSYYPVEVQCRTILACCLLHNLINREMT 
Subjt:  GYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREMTI

Query:  FNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE
        F+I D+IDEV+ THAT+AADDIHYIETSNEW++WRDDLAE
Subjt:  FNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE

A0A5A7VL29 Retrotransposon protein

4.2e-55

79.29

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Query:  GYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREMTI
        GYYYLVDAG            GQRYHLQEW G ENAPSTSK+FFNMKHSSARNVI+RA  VLKG+WAILR KSYYPVEVQCRTILACCLLHNLINREMT 
Subjt:  GYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREMTI

Query:  FNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE
        F+I D+IDEV+ THAT+AADDIHYIETSNEW++WRDDLAE
Subjt:  FNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE

A0A5D3C3Z1 Putative nuclease HARBI1

6.9e-58

80.28

Show/hide

Query:  MTGYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREM
        MTGYYYLVDAG            GQRYHLQEW GAENAPSTSK+FF+MKHSSARNVI+RA  VLKG+W ILR+KSYYPVEVQCRTILACCLLHNLINREM
Subjt:  MTGYYYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREM

Query:  TIFNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE
        T F+I+DDIDEV+FTHATS A DIHYIETSNEWT+WRDDLAE
Subjt:  TIFNIMDDIDEVNFTHATSAADDIHYIETSNEWTRWRDDLAE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

2.2e-11

35.79

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Query:  YYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINRE
        +YLVD G            G RYHLQE+ G    P T  + FN++H S RNVI+R   + K ++AI +    +  + Q   +L C  LHN + +E
Subjt:  YYLVDAG------------GQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINRE

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

8.0e-06

30.77

Show/hide

Query:  GYYYLVDAGGQRY-----HLQEWHG-AENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINRE
        G YY+VD    +Y      +  +HG + N+   +K+ FN +H      I R    LK ++ IL     YP++ Q + ++A C LHN +  E
Subjt:  GYYYLVDAGGQRY-----HLQEWHG-AENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINRE

Sequences

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CDS sequence

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ATGACAGGCTATTACTACCTAGTTGATGCCGGAGGCCAACGCTACCACTTGCAAGAATGGCATGGCGCTGAAAATGCACCTTCAACTTCAAAAAAGTTCTTCAAT
ATGAAGCATTCTTCTGCTCGTAATGTAATCAAAAGAGCATTGGTTGTCTTGAAGGGTCAATGGGCGATACTACGGGAAAAGTCATACTACCCTGTAGAAGTCCAA
TGTCGCACAATACTCGCATGTTGTCTCCTCCACAACCTTATCAATAGAGAGATGACAATCTTTAATATAATGGACGACATAGATGAGGTTAATTTCACTCACGCG
ACTAGTGCTGCAGATGACATACATTACATAGAGACGTCCAATGAGTGGACTCGGTGGAGGGACGACCTTGCTGAATAA

mRNA sequence

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Protein sequence

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MTGYYYLVDAGGQRYHLQEWHGAENAPSTSKKFFNMKHSSARNVIKRALVVLKGQWAILREKSYYPVEVQCRTILACCLLHNLINREMTIFNIMDDIDEVNFTHA
TSAADDIHYIETSNEWTRWRDDLAE

Pay0001521 (gene) of Melon (Payzawat) v1 genome