CuGenDBv2

Gene ID	Pay0001575
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Protein ROOT HAIR DEFECTIVE 3 homolog
Genome location	chr04:23943273..23954242
RNA-Seq Expression	Pay0001575
Synteny	Pay0001575
Gene Ontology terms	GO:0005789 - endoplasmic reticulum membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003924 - GTPase activity (molecular function) GO:0005525 - GTP binding (molecular function)
InterPro domains	IPR008803 - RHD3/Sey1 IPR027417 - P-loop containing nucleoside triphosphate hydrolase IPR030386 - GB1/RHD3-type guanine nucleotide-binding (G) domain

Homology

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GenBank top hits

e value

%identity

Alignment

ADN34108.1 protein SEY1 [Cucumis melo subsp. melo]

2.2e-40

76.52

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Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN
        D DGGFNVDGI+ FIKDVKLGECGLS+AV   MGPQSSGKSTLLNNLFGTNFRE+DAFKGRSQ TKGIWLARCA IEPCTL+MDLEGTDGRERGE   A 
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN

Query:  LRQRFFHSIALGGLV
         +Q    ++A+  +V
Subjt:  LRQRFFHSIALGGLV

KAA0059433.1 protein ROOT HAIR DEFECTIVE 3 [Cucumis melo var. makuwa]

2.2e-40

76.52

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Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN
        D DGGFNVDGI+ FIKDVKLGECGLS+AV   MGPQSSGKSTLLNNLFGTNFRE+DAFKGRSQ TKGIWLARCA IEPCTL+MDLEGTDGRERGE   A 
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN

Query:  LRQRFFHSIALGGLV
         +Q    ++A+  +V
Subjt:  LRQRFFHSIALGGLV

KAG6575476.1 Protein ROOT HAIR DEFECTIVE 3-like 1, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-40

76.52

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Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN
        D DGGFNVDGI+ FIKDVKLGECGLS+AV   MGPQSSGKSTLLNNLFGTNFRE+DAFKGRSQ TKGIWLARCA IEPCTL+MDLEGTDGRERGE   A 
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN

Query:  LRQRFFHSIALGGLV
         +Q    ++A+  +V
Subjt:  LRQRFFHSIALGGLV

XP_022992115.1 protein ROOT HAIR DEFECTIVE 3 isoform X1 [Cucurbita maxima]

2.2e-40

76.52

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Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN
        D DGGFNVDGI+ FIKDVKLGECGLS+AV   MGPQSSGKSTLLNNLFGTNFRE+DAFKGRSQ TKGIWLARCA IEPCTL+MDLEGTDGRERGE   A 
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN

Query:  LRQRFFHSIALGGLV
         +Q    ++A+  +V
Subjt:  LRQRFFHSIALGGLV

XP_022992116.1 protein ROOT HAIR DEFECTIVE 3 isoform X2 [Cucurbita maxima]

2.2e-40

76.52

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Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN
        D DGGFNVDGI+ FIKDVKLGECGLS+AV   MGPQSSGKSTLLNNLFGTNFRE+DAFKGRSQ TKGIWLARCA IEPCTL+MDLEGTDGRERGE   A 
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN

Query:  LRQRFFHSIALGGLV
         +Q    ++A+  +V
Subjt:  LRQRFFHSIALGGLV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UU38 Protein ROOT HAIR DEFECTIVE 3 homolog

1.1e-40

76.52

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Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN
        D DGGFNVDGI+ FIKDVKLGECGLS+AV   MGPQSSGKSTLLNNLFGTNFRE+DAFKGRSQ TKGIWLARCA IEPCTL+MDLEGTDGRERGE   A 
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN

Query:  LRQRFFHSIALGGLV
         +Q    ++A+  +V
Subjt:  LRQRFFHSIALGGLV

A0A6J1GQD5 Protein ROOT HAIR DEFECTIVE 3 homolog

1.1e-40

76.52

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Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN
        D DGGFNVDGI+ FIKDVKLGECGLS+AV   MGPQSSGKSTLLNNLFGTNFRE+DAFKGRSQ TKGIWLARCA IEPCTL+MDLEGTDGRERGE   A 
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN

Query:  LRQRFFHSIALGGLV
         +Q    ++A+  +V
Subjt:  LRQRFFHSIALGGLV

A0A6J1JSN6 Protein ROOT HAIR DEFECTIVE 3 homolog

1.1e-40

76.52

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Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN
        D DGGFNVDGI+ FIKDVKLGECGLS+AV   MGPQSSGKSTLLNNLFGTNFRE+DAFKGRSQ TKGIWLARCA IEPCTL+MDLEGTDGRERGE   A 
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN

Query:  LRQRFFHSIALGGLV
         +Q    ++A+  +V
Subjt:  LRQRFFHSIALGGLV

A0A6J1JUT6 Protein ROOT HAIR DEFECTIVE 3 homolog

1.1e-40

76.52

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Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN
        D DGGFNVDGI+ FIKDVKLGECGLS+AV   MGPQSSGKSTLLNNLFGTNFRE+DAFKGRSQ TKGIWLARCA IEPCTL+MDLEGTDGRERGE   A 
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN

Query:  LRQRFFHSIALGGLV
         +Q    ++A+  +V
Subjt:  LRQRFFHSIALGGLV

E5GCA9 Protein SEY1

1.1e-40

76.52

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Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN
        D DGGFNVDGI+ FIKDVKLGECGLS+AV   MGPQSSGKSTLLNNLFGTNFRE+DAFKGRSQ TKGIWLARCA IEPCTL+MDLEGTDGRERGE   A 
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN

Query:  LRQRFFHSIALGGLV
         +Q    ++A+  +V
Subjt:  LRQRFFHSIALGGLV

SwissProt top hits

e value

%identity

Alignment

P93042 Protein ROOT HAIR DEFECTIVE 3

2.1e-38

68.7

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Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN
        D DG FNV G++ FIK+VKL ECGLS+AV   MGPQSSGKSTLLN+LFGTNFRE+DAF+GRSQ TKGIW+ARCA IEPCT++MDLEGTDGRERGE   A 
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN

Query:  LRQRFFHSIALGGLV
         +Q    ++A+  +V
Subjt:  LRQRFFHSIALGGLV

Q0JLS6 Protein ROOT HAIR DEFECTIVE 3

5.3e-37

66.96

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Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN
        D DG FNV G+E F+K+VK+GECGLS+AV   MGPQSSGKSTLLN+LF TNFRE+DAFKGRSQ TKGIW+A+  +IEPCTL+MDLEGTDGRERGE   A 
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN

Query:  LRQRFFHSIALGGLV
         +Q    ++A+  +V
Subjt:  LRQRFFHSIALGGLV

Q2QMH2 Protein ROOT HAIR DEFECTIVE 3 homolog 1

3.9e-32

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Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN
        D +G F  D  E F+    +  CGLS+AV   MGPQSSGKSTLLN LFGTNFRE+DAF+GRSQ TKGIW+ARC  +EPCT++MDLEGTDGRERGE   A 
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN

Query:  LRQRFFHSIALGGLV
         +Q    ++A+  +V
Subjt:  LRQRFFHSIALGGLV

Q9FKE9 Protein ROOT HAIR DEFECTIVE 3 homolog 2

1.0e-32

70.53

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Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE
        D +G FNV G++ F+K  KL +CGLS+AV   MGPQSSGKSTLLN+LF T+FRE+DAF GRSQ TKGIW+ARC  IEP T+ MDLEGTDGRERGE
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE

Q9SSN0 Protein ROOT HAIR DEFECTIVE 3 homolog 1

1.1e-37

69.57

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Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN
        D DG +NV  I+ FIKDVKL +CGLS+AV   MGPQSSGKSTLLN+LFGTNF E+DAFKGRSQ TKGIWLARCA IEPCTL+MDLEGTDGRERGE   A 
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN

Query:  LRQRFFHSIALGGLV
         +Q    ++A+  +V
Subjt:  LRQRFFHSIALGGLV

Arabidopsis top hits

e value

%identity

Alignment

AT1G72960.1 Root hair defective 3 GTP-binding protein (RHD3)

7.5e-39

69.57

Show/hide

Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN
        D DG +NV  I+ FIKDVKL +CGLS+AV   MGPQSSGKSTLLN+LFGTNF E+DAFKGRSQ TKGIWLARCA IEPCTL+MDLEGTDGRERGE   A 
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN

Query:  LRQRFFHSIALGGLV
         +Q    ++A+  +V
Subjt:  LRQRFFHSIALGGLV

AT3G13870.1 Root hair defective 3 GTP-binding protein (RHD3)

1.5e-39

68.7

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Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN
        D DG FNV G++ FIK+VKL ECGLS+AV   MGPQSSGKSTLLN+LFGTNFRE+DAF+GRSQ TKGIW+ARCA IEPCT++MDLEGTDGRERGE   A 
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VAN

Query:  LRQRFFHSIALGGLV
         +Q    ++A+  +V
Subjt:  LRQRFFHSIALGGLV

AT3G13870.2 Root hair defective 3 GTP-binding protein (RHD3)

3.2e-13

59.65

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Query:  KGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VANLRQRFFHSIALGGLV
        +G SQ TKGIW+ARCA IEPCT++MDLEGTDGRERGE   A  +Q    ++A+  +V
Subjt:  KGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE--VANLRQRFFHSIALGGLV

AT5G45160.1 Root hair defective 3 GTP-binding protein (RHD3)

7.3e-34

70.53

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Query:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE
        D +G FNV G++ F+K  KL +CGLS+AV   MGPQSSGKSTLLN+LF T+FRE+DAF GRSQ TKGIW+ARC  IEP T+ MDLEGTDGRERGE
Subjt:  DRDGGFNVDGIEGFIKDVKLGECGLSHAV---MGPQSSGKSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGE

Sequences

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CDS sequence

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ATGGGCCATAAACAGGTACAAGTTGTCCAGAGGCACGATCCGACAATGAGCCCAGAGACCGGGAAGGGTCTAAAGCTAGATCCAGTTCGTAAGACACCAAAGGAGCGGTT
TAGTTGGCTCAGAAGAAGGAGAAGTGAGTCAGAAGTTGATCAGCTAGGAGAGTTGATGAGCATGCCTCCTGTCACTCCCAAGGGTTCCTTTCTGTCTCAAGCCTCGACTC
GAGATAGAGATGGAGGATTCAATGTCGATGGAATTGAGGGCTTTATCAAAGACGTGAAATTGGGGGAATGTGGACTTTCACATGCAGTAATGGGCCCTCAAAGTAGTGGG
AAGAGTACACTACTAAATAATCTGTTTGGAACCAACTTCAGAGAGATAGATGCTTTCAAAGGGAGGTCGCAAAAAACTAAAGGTATATGGTTGGCTAGATGCGCCGACAT
CGAGCCTTGTACACTTATGATGGATTTGGAAGGAACTGATGGAAGAGAGCGAGGAGAGGTTGCAAATTTGAGACAGAGATTCTTCCATTCTATTGCCCTAGGAGGACTGG
TTGAGGTTGGAAGAAGAAGTACAGTCCGGTCCAGGACTAGCCGGAAAGGGAATGATAATCAGGTTTCAAAGGAGGTGTTTGAAAAGGAAGAAAGATCAAGCCTAGCAAAG
CAAAGCGCCTTCAACCTACGACAAGGATCAATGAACAAAGGATAA

mRNA sequence

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Protein sequence

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MGHKQVQVVQRHDPTMSPETGKGLKLDPVRKTPKERFSWLRRRRSESEVDQLGELMSMPPVTPKGSFLSQASTRDRDGGFNVDGIEGFIKDVKLGECGLSHAVMGPQSSG
KSTLLNNLFGTNFREIDAFKGRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEVANLRQRFFHSIALGGLVEVGRRSTVRSRTSRKGNDNQVSKEVFEKEERSSLAK
QSAFNLRQGSMNKG

Pay0001575 (gene) of Melon (Payzawat) v1 genome