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Pay0001600 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0001600
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRibonuclease H
Genome locationchr12:17613152..17613592
RNA-Seq ExpressionPay0001600
SyntenyPay0001600
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036943.1 uncharacterized protein E6C27_scaffold86G00190 [Cucumis melo var. makuwa]7.2e-7494.52Show/hide
Query:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC
        MGLQ ACD SIKKLKVLGDSMLVIHQVKEEWETRDAKL  YSQYVTKLSQ FEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC
Subjt:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC

Query:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG
        MNVGNDNKPWYFDIKQYIKCREY YEA ENDKRTIRRL MNFFLSG
Subjt:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG

KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]9.4e-7494.52Show/hide
Query:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC
        MGLQ ACD SIKKLKVLGDSMLVIHQVKEEWETR AKL  YSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC
Subjt:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC

Query:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG
        MNVGNDNKPWYFDIKQYIKCREY YEA ENDKRTIRRL MNFFLSG
Subjt:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG

KAA0046213.1 uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa]2.7e-7393.15Show/hide
Query:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC
        MGL+ ACD SIKKLKVLGDSMLVIHQVKEEWETR AKL  YSQYVTKLSQNFEKISFDHVPREDNRMADALATLA+MFDLNLEFELHPIQITKRDVPAYC
Subjt:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC

Query:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG
        MNVGNDNKPWYFDIKQYIKCREY YEALENDKRTIR+L MNFFLSG
Subjt:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG

TYK24459.1 uncharacterized protein E5676_scaffold717G00160 [Cucumis melo var. makuwa]5.5e-7494.52Show/hide
Query:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC
        MGLQ ACD SIKKLKVLGDSMLVIHQVKEEWETRDAKL  YSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC
Subjt:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC

Query:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG
        MNVGNDNKPWYFDIKQYIKCREY YEA ENDKR IRRL MNFFLSG
Subjt:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG

XP_016902353.1 PREDICTED: uncharacterized protein LOC107991646 [Cucumis melo]4.8e-7899.32Show/hide
Query:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC
        MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDN+MADALATLAVMFDLNLEFELHPIQITKRDVPAYC
Subjt:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC

Query:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG
        MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG
Subjt:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG

TrEMBL top hitse value%identityAlignment
A0A1S4E2A2 uncharacterized protein LOC1079916462.3e-7899.32Show/hide
Query:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC
        MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDN+MADALATLAVMFDLNLEFELHPIQITKRDVPAYC
Subjt:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC

Query:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG
        MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG
Subjt:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG

A0A5A7T1X2 Ribonuclease H3.5e-7494.52Show/hide
Query:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC
        MGLQ ACD SIKKLKVLGDSMLVIHQVKEEWETRDAKL  YSQYVTKLSQ FEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC
Subjt:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC

Query:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG
        MNVGNDNKPWYFDIKQYIKCREY YEA ENDKRTIRRL MNFFLSG
Subjt:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG

A0A5A7T7R4 Ribonuclease H4.5e-7494.52Show/hide
Query:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC
        MGLQ ACD SIKKLKVLGDSMLVIHQVKEEWETR AKL  YSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC
Subjt:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC

Query:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG
        MNVGNDNKPWYFDIKQYIKCREY YEA ENDKRTIRRL MNFFLSG
Subjt:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG

A0A5A7TRL7 Ribonuclease H1.3e-7393.15Show/hide
Query:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC
        MGL+ ACD SIKKLKVLGDSMLVIHQVKEEWETR AKL  YSQYVTKLSQNFEKISFDHVPREDNRMADALATLA+MFDLNLEFELHPIQITKRDVPAYC
Subjt:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC

Query:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG
        MNVGNDNKPWYFDIKQYIKCREY YEALENDKRTIR+L MNFFLSG
Subjt:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG

A0A5D3DMD2 Ribonuclease H2.7e-7494.52Show/hide
Query:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC
        MGLQ ACD SIKKLKVLGDSMLVIHQVKEEWETRDAKL  YSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC
Subjt:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYC

Query:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG
        MNVGNDNKPWYFDIKQYIKCREY YEA ENDKR IRRL MNFFLSG
Subjt:  MNVGNDNKPWYFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein4.4e-0535.53Show/hide
Query:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAV
        +GL+ A +   K +KV GDS LV  Q+K +W+     LA   +    L          HV R  N  AD  A LAV
Subjt:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAV

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.1e-0938.16Show/hide
Query:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAV
        +GL++A D   K + VLGDSMLV  QV+  W+T   K+A   +   +L  +F+     H+ RE N  AD  A  A+
Subjt:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAV

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.1e-0938.16Show/hide
Query:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAV
        +GL++A D   K + VLGDSMLV  QV+  W+T   K+A   +   +L  +F+     H+ RE N  AD  A  A+
Subjt:  MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACTTCAAGCAGCATGCGATACGAGTATTAAAAAGTTGAAAGTTTTGGGTGACTCAATGTTAGTGATACACCAAGTCAAGGAAGAATGGGAAACAAGAGATGCTAA
ATTAGCGTCTTACAGCCAATACGTTACAAAATTATCTCAAAATTTTGAAAAGATTTCATTTGACCATGTTCCTAGGGAAGACAATCGAATGGCAGATGCATTAGCCACCC
TGGCAGTGATGTTTGATCTTAATCTTGAATTTGAACTTCATCCAATCCAAATTACAAAGCGAGACGTGCCAGCATATTGTATGAATGTTGGAAATGATAACAAGCCATGG
TATTTTGATATTAAGCAATACATAAAGTGTAGAGAATATTCATATGAAGCTTTAGAGAATGACAAACGCACAATAAGGAGGTTGGTCATGAACTTTTTCTTAAGTGGCTA
A
mRNA sequenceShow/hide mRNA sequence
ATGGGACTTCAAGCAGCATGCGATACGAGTATTAAAAAGTTGAAAGTTTTGGGTGACTCAATGTTAGTGATACACCAAGTCAAGGAAGAATGGGAAACAAGAGATGCTAA
ATTAGCGTCTTACAGCCAATACGTTACAAAATTATCTCAAAATTTTGAAAAGATTTCATTTGACCATGTTCCTAGGGAAGACAATCGAATGGCAGATGCATTAGCCACCC
TGGCAGTGATGTTTGATCTTAATCTTGAATTTGAACTTCATCCAATCCAAATTACAAAGCGAGACGTGCCAGCATATTGTATGAATGTTGGAAATGATAACAAGCCATGG
TATTTTGATATTAAGCAATACATAAAGTGTAGAGAATATTCATATGAAGCTTTAGAGAATGACAAACGCACAATAAGGAGGTTGGTCATGAACTTTTTCTTAAGTGGCTA
A
Protein sequenceShow/hide protein sequence
MGLQAACDTSIKKLKVLGDSMLVIHQVKEEWETRDAKLASYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPW
YFDIKQYIKCREYSYEALENDKRTIRRLVMNFFLSG