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Pay0001660 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0001660
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReverse transcriptase
Genome locationchr07:11557187..11559415
RNA-Seq ExpressionPay0001660
SyntenyPay0001660
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032361.1 pol protein [Cucumis melo var. makuwa]2.6e-7291.14Show/hide
Query:  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQIS
        +SRQK YADVR KDLEFEV DMVFLKVAPMKGVLRFEKKGKLSPRF+GPFEILERIG VAYRLAL PSFSAVH+VFHVSMLR+YVADPTHVV+FEPLQIS
Subjt:  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQIS

Query:  ENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD
        EN+SYEEQPVEILARKVKKLRSREISLVKVLWRNH VEEATWEREEDMRAQYPEL  D
Subjt:  ENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD

KAA0045284.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-7391.77Show/hide
Query:  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQIS
        KSRQK YADVR KDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIG VAYRLALPPSFSAVH+VFHVSMLRKYVAD THVV+FEPLQIS
Subjt:  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQIS

Query:  ENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD
        EN+SYEEQPVEI ARK+KKLRSREISLVKVLWRNH VEEATWEREEDMRAQ+PEL +D
Subjt:  ENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD

KAA0064254.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.3e-7594.3Show/hide
Query:  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQIS
        +SRQK YADVR KDLEFEVGDMVFLKVAPMKGVLRFEKK KLSPRFVGPFEILERIGLVAYRLALPPSFS VHNVFHVSMLRKYVADPTHVVEFEPLQIS
Subjt:  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQIS

Query:  ENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD
        ENMSY+EQPVEILAR+VKKLRSREISLVKVLWRNH VEEATWEREEDMRAQYPEL KD
Subjt:  ENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD

TYK04678.1 pol protein [Cucumis melo var. makuwa]7.0e-7389.87Show/hide
Query:  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQIS
        +SRQK YAD++ KDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIG VAYRLALPPSF AVH+VFHVSM+R+YVADPTHVV+FEPLQIS
Subjt:  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQIS

Query:  ENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD
        EN+SYEEQPVEILAR+VKKLRSREISLVKV+WRNH VEEATWEREEDMRAQYPEL KD
Subjt:  ENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD

XP_016899400.1 PREDICTED: uncharacterized protein LOC107990499 [Cucumis melo]8.2e-7487.43Show/hide
Query:  MAPVELKELKSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHV
        MAP ELKELKS+QK YADVR KDLEFEVGDMVFLKVAPMKGVLRFE KGKLSPRFVGPFEILERIG VAY LALPPSFSAVH+VFHVSMLR+YVADPTHV
Subjt:  MAPVELKELKSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHV

Query:  VEFEPLQISENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD
        V+FEPL+ISEN+SYEEQPVEILA++VKKLRSREISLVKVLWRNH VEEATWEREEDM+  YPE  +D
Subjt:  VEFEPLQISENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD

TrEMBL top hitse value%identityAlignment
A0A1S4DUK4 uncharacterized protein LOC1079904994.0e-7487.43Show/hide
Query:  MAPVELKELKSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHV
        MAP ELKELKS+QK YADVR KDLEFEVGDMVFLKVAPMKGVLRFE KGKLSPRFVGPFEILERIG VAY LALPPSFSAVH+VFHVSMLR+YVADPTHV
Subjt:  MAPVELKELKSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHV

Query:  VEFEPLQISENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD
        V+FEPL+ISEN+SYEEQPVEILA++VKKLRSREISLVKVLWRNH VEEATWEREEDM+  YPE  +D
Subjt:  VEFEPLQISENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD

A0A5A7TQ85 Reverse transcriptase1.2e-7391.77Show/hide
Query:  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQIS
        KSRQK YADVR KDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIG VAYRLALPPSFSAVH+VFHVSMLRKYVAD THVV+FEPLQIS
Subjt:  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQIS

Query:  ENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD
        EN+SYEEQPVEI ARK+KKLRSREISLVKVLWRNH VEEATWEREEDMRAQ+PEL +D
Subjt:  ENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD

A0A5A7VAJ0 DNA/RNA polymerases superfamily protein1.6e-7594.3Show/hide
Query:  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQIS
        +SRQK YADVR KDLEFEVGDMVFLKVAPMKGVLRFEKK KLSPRFVGPFEILERIGLVAYRLALPPSFS VHNVFHVSMLRKYVADPTHVVEFEPLQIS
Subjt:  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQIS

Query:  ENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD
        ENMSY+EQPVEILAR+VKKLRSREISLVKVLWRNH VEEATWEREEDMRAQYPEL KD
Subjt:  ENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD

A0A5D3C081 Pol protein3.4e-7389.87Show/hide
Query:  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQIS
        +SRQK YAD++ KDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIG VAYRLALPPSF AVH+VFHVSM+R+YVADPTHVV+FEPLQIS
Subjt:  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQIS

Query:  ENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD
        EN+SYEEQPVEILAR+VKKLRSREISLVKV+WRNH VEEATWEREEDMRAQYPEL KD
Subjt:  ENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD

A0A5D3E6D2 Pol protein1.3e-7291.14Show/hide
Query:  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQIS
        +SRQK YADVR KDLEFEV DMVFLKVAPMKGVLRFEKKGKLSPRF+GPFEILERIG VAYRLAL PSFSAVH+VFHVSMLR+YVADPTHVV+FEPLQIS
Subjt:  KSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQIS

Query:  ENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD
        EN+SYEEQPVEILARKVKKLRSREISLVKVLWRNH VEEATWEREEDMRAQYPEL  D
Subjt:  ENMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein7.6e-0639.29Show/hide
Query:  RQKIYADVRCKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAV-HNVFHVSMLRKY
        + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ G   Y L LP S   +  + FHVS L KY
Subjt:  RQKIYADVRCKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAV-HNVFHVSMLRKY

P0CT35 Transposon Tf2-2 polyprotein7.6e-0639.29Show/hide
Query:  RQKIYADVRCKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAV-HNVFHVSMLRKY
        + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ G   Y L LP S   +  + FHVS L KY
Subjt:  RQKIYADVRCKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAV-HNVFHVSMLRKY

P0CT36 Transposon Tf2-3 polyprotein7.6e-0639.29Show/hide
Query:  RQKIYADVRCKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAV-HNVFHVSMLRKY
        + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ G   Y L LP S   +  + FHVS L KY
Subjt:  RQKIYADVRCKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAV-HNVFHVSMLRKY

P0CT41 Transposon Tf2-12 polyprotein7.6e-0639.29Show/hide
Query:  RQKIYADVRCKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAV-HNVFHVSMLRKY
        + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ G   Y L LP S   +  + FHVS L KY
Subjt:  RQKIYADVRCKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAV-HNVFHVSMLRKY

Q9UR07 Transposon Tf2-11 polyprotein7.6e-0639.29Show/hide
Query:  RQKIYADVRCKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAV-HNVFHVSMLRKY
        + K Y D++ +++ EF+ GD+V +K     G L   K  KL+P F GPF +L++ G   Y L LP S   +  + FHVS L KY
Subjt:  RQKIYADVRCKDL-EFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAV-HNVFHVSMLRKY

Arabidopsis top hitse value%identityAlignment
AT1G42190.1 GAG/POL/ENV polyprotein7.3e-0446.51Show/hide
Query:  YRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQISENM
        Y+L LP    A H VFHVSMLRK +    +V+   P  + ENM
Subjt:  YRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQISENM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCAGTCGAGCTGAAAGAGCTGAAGAGCAGACAGAAGATTTATGCTGATGTGCGGTGTAAGGATCTCGAGTTTGAGGTAGGAGACATGGTCTTTCTGAAGGTAGC
ACCTATGAAGGGTGTTCTGAGGTTCGAGAAGAAGGGGAAGCTAAGTCCACGTTTCGTAGGACCGTTTGAGATACTGGAGCGGATTGGCCTTGTAGCTTATCGCTTGGCGT
TGCCCCCATCTTTTTCTGCAGTGCATAATGTATTCCATGTCTCCATGCTGAGGAAGTATGTCGCAGATCCGACGCATGTAGTGGAATTCGAGCCATTGCAAATTAGTGAG
AACATGAGCTACGAGGAGCAACCTGTCGAGATCTTGGCAAGGAAAGTCAAGAAGCTCCGTAGTCGAGAAATTTCACTGGTCAAAGTTCTTTGGCGAAACCATGAAGTTGA
AGAGGCCACATGGGAGAGAGAAGAGGATATGAGAGCTCAGTACCCCGAGCTGCTCAAGGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCAGTCGAGCTGAAAGAGCTGAAGAGCAGACAGAAGATTTATGCTGATGTGCGGTGTAAGGATCTCGAGTTTGAGGTAGGAGACATGGTCTTTCTGAAGGTAGC
ACCTATGAAGGGTGTTCTGAGGTTCGAGAAGAAGGGGAAGCTAAGTCCACGTTTCGTAGGACCGTTTGAGATACTGGAGCGGATTGGCCTTGTAGCTTATCGCTTGGCGT
TGCCCCCATCTTTTTCTGCAGTGCATAATGTATTCCATGTCTCCATGCTGAGGAAGTATGTCGCAGATCCGACGCATGTAGTGGAATTCGAGCCATTGCAAATTAGTGAG
AACATGAGCTACGAGGAGCAACCTGTCGAGATCTTGGCAAGGAAAGTCAAGAAGCTCCGTAGTCGAGAAATTTCACTGGTCAAAGTTCTTTGGCGAAACCATGAAGTTGA
AGAGGCCACATGGGAGAGAGAAGAGGATATGAGAGCTCAGTACCCCGAGCTGCTCAAGGATTAG
Protein sequenceShow/hide protein sequence
MAPVELKELKSRQKIYADVRCKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGLVAYRLALPPSFSAVHNVFHVSMLRKYVADPTHVVEFEPLQISE
NMSYEEQPVEILARKVKKLRSREISLVKVLWRNHEVEEATWEREEDMRAQYPELLKD