CuGenDBv2

Gene ID	Pay0001732
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	rRNA 2'-O-methyltransferase fibrillarin 2
Genome location	chr06:21765881..21766224
RNA-Seq Expression	Pay0001732
Synteny	Pay0001732
Gene Ontology terms	GO:0000494 - box C/D snoRNA 3'-end processing (biological process) GO:1990258 - histone glutamine methylation (biological process) GO:0051321 - meiotic cell cycle (biological process) GO:0051225 - spindle assembly (biological process) GO:0031167 - rRNA methylation (biological process) GO:0031122 - cytoplasmic microtubule organization (biological process) GO:0007020 - microtubule nucleation (biological process) GO:0000278 - mitotic cell cycle (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005874 - microtubule (cellular component) GO:0005730 - nucleolus (cellular component) GO:0000930 - gamma-tubulin complex (cellular component) GO:0031428 - box C/D snoRNP complex (cellular component) GO:0032040 - small-subunit processome (cellular component) GO:0000923 - equatorial microtubule organizing center (cellular component) GO:0000922 - spindle pole (cellular component) GO:0008649 - rRNA methyltransferase activity (molecular function) GO:0003723 - RNA binding (molecular function) GO:0043015 - gamma-tubulin binding (molecular function) GO:0051011 - microtubule minus-end binding (molecular function) GO:1990259 - histone-glutamine methyltransferase activity (molecular function)
InterPro domains	IPR000692 - Fibrillarin IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase

Homology

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GenBank top hits

e value

%identity

Alignment

KGN57431.2 hypothetical protein Csa_009607 [Cucumis sativus]

1.5e-36

98.78

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFA+EVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

XP_016903173.1 PREDICTED: mediator of RNA polymerase II transcription subunit 36a-like [Cucumis melo]

4.0e-37

98.8

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Query:  MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFA+EVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Subjt:  MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

XP_022152767.1 mediator of RNA polymerase II transcription subunit 36a-like [Momordica charantia]

1.5e-36

97.59

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Query:  MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFA+EVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQK AA
Subjt:  MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

XP_022922917.1 probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita moschata]

1.5e-36

98.78

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFA+EVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

XP_023552409.1 mediator of RNA polymerase II transcription subunit 36a-like [Cucurbita pepo subsp. pepo]

1.5e-36

98.78

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFA+EVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KLF9 Uncharacterized protein

7.3e-37

98.78

Show/hide

Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFA+EVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

A0A0A0L9V7 Uncharacterized protein

7.3e-37

98.78

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFA+EVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

A0A1S4E4L3 mediator of RNA polymerase II transcription subunit 36a-like

1.9e-37

98.8

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Query:  MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFA+EVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Subjt:  MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

A0A5D3CYG2 Mediator of RNA polymerase II transcription subunit 36a-like

1.9e-37

98.8

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Query:  MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFA+EVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Subjt:  MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

A0A6J1JA27 probable mediator of RNA polymerase II transcription subunit 36b

7.3e-37

98.78

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFA+EVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

SwissProt top hits

e value

%identity

Alignment

P22232 rRNA 2'-O-methyltransferase fibrillarin

2.1e-25

72.15

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQK
        Q RI+ALNA  FLK GGHFVISIKANCIDST   EAVFA EV K++ +  KP EQ+TLEP+ERDHA VVGIYR P KQK
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQK

Q8I1F4 rRNA 2'-O-methyltransferase fibrillarin

4.3e-26

71.79

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQ
        Q RI+ALNA +FLK GGHFVISIKA+CIDST   EAVFA+EV K++AD+ KP EQ+TLEP+ERDHA VVG+YR P KQ
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQ

Q94AH9 rRNA 2'-O-methyltransferase fibrillarin 2

1.2e-33

87.65

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAA
        QARILALNASYFLK+GGHFVISIKANCIDSTVPAEAVF TEV KL+ +QFKP EQVTLEPFERDHACVVG YR PKK KAA
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAA

Q9FEF8 rRNA 2'-O-methyltransferase fibrillarin 1

1.2e-31

82.93

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        QARILALNAS+FLK GGHFVISIKANCIDSTV AEAVF +EV KL+ +QFKP EQVTLEPFERDHACVVG YR PKKQK  A
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

Q9W1V3 rRNA 2'-O-methyltransferase fibrillarin

5.6e-26

71.79

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQ
        Q RI+ALNA +FLK GGHFVISIKA+CIDST   EAVFA EV K++AD+ KP EQ+TLEP+ERDHA VVG+YR P KQ
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQ

Arabidopsis top hits

e value

%identity

Alignment

AT4G25630.1 fibrillarin 2

8.9e-35

87.65

Show/hide

Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAA
        QARILALNASYFLK+GGHFVISIKANCIDSTVPAEAVF TEV KL+ +QFKP EQVTLEPFERDHACVVG YR PKK KAA
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAA

AT5G52470.1 fibrillarin 1

8.3e-33

82.93

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        QARILALNAS+FLK GGHFVISIKANCIDSTV AEAVF +EV KL+ +QFKP EQVTLEPFERDHACVVG YR PKKQK  A
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

AT5G52490.1 Fibrillarin family protein

4.3e-21

61.04

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKK
        QA IL+LNASYFLK+GGHF+ISIKAN IDST+ AE V+  EV KL+ ++ +PTE + L+  E  HACV G YR P+K
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKK

Sequences

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CDS sequence

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ATGCAGGCAAGAATTTTGGCTCTTAATGCCTCATATTTTCTAAAAGCCGGTGGTCATTTTGTTATATCAATCAAGGCCAACTGCATAGACTCTACCGTTCCAGCAGAGGC
AGTGTTTGCAACTGAGGTGAATAAGTTAAAAGCAGATCAGTTCAAACCGACTGAGCAAGTAACACTTGAACCATTCGAGCGAGATCATGCCTGTGTTGTCGGTATTTATC
GGGCGCCAAAGAAACAAAAGGCTGCTGCCTAG

mRNA sequence

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Protein sequence

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MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFATEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

Pay0001732 (gene) of Melon (Payzawat) v1 genome