CuGenDBv2

Gene ID	Pay0002003
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Transcription initiation factor IIA subunit 2
Genome location	chr03:841752..849096
RNA-Seq Expression	Pay0002003
Synteny	Pay0002003
Gene Ontology terms	GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process) GO:0005672 - transcription factor TFIIA complex (cellular component) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function) GO:0017025 - TBP-class protein binding (molecular function)
InterPro domains	IPR003194 - Transcription initiation factor IIA, gamma subunit IPR009083 - Transcription factor IIA, alpha-helical domain IPR009088 - Transcription factor IIA, beta-barrel IPR015871 - Transcription initiation factor IIA, gamma subunit, C-terminal IPR015872 - Transcription initiation factor IIA, gamma subunit, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6608125.1 Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

9.0e-50

96.23

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIKGHLHTYRFCDNVWTFILQDA+FKNEDS ETVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

XP_004138655.1 transcription initiation factor IIA subunit 2 [Cucumis sativus]

3.1e-50

97.17

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVT+KGHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_008441202.1 PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo]

2.1e-51

100

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_022941425.1 transcription initiation factor IIA subunit 2-like [Cucurbita moschata]

9.0e-50

96.23

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIKGHLHTYRFCDNVWTFILQDA+FKNEDS ETVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

XP_038897043.1 transcription initiation factor IIA subunit 2 [Benincasa hispida]

4.0e-50

97.17

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIKGHLHTYRFCDNVWTFILQDA+FKNEDSSE+VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LMF8 Transcription initiation factor IIA subunit 2

1.5e-50

97.17

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVT+KGHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A1S3B2F6 Transcription initiation factor IIA subunit 2

1.0e-51

100

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A6J1F935 Transcription initiation factor IIA subunit 2

1.3e-49

95.28

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKV+IKGHLHTYRFCDNVWTFILQDA+FKNEDS ETVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

A0A6J1FTM1 Transcription initiation factor IIA subunit 2

4.3e-50

96.23

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIKGHLHTYRFCDNVWTFILQDA+FKNEDS ETVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

A0A6J1J100 Transcription initiation factor IIA subunit 2

4.3e-50

96.23

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIKGHLHTYRFCDNVWTFILQDA+FKNEDS ETVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

SwissProt top hits

e value

%identity

Alignment

A2XZI2 Transcription initiation factor IIA subunit 2

2.3e-48

87.74

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMT+ALE+QVKSKV+IKGHLHTYRFCDNVWTFIL +ASFKNE+++E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

B7Q1Q9 Transcription initiation factor IIA subunit 2

4.7e-25

50.5

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Query:  TFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK-GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDS
        +++LYR +T+G  L E+LDE++Q G ++P LA++VL+QFDK++ +AL ++VK+++T K GHL TYRFCDNVWTF+L+D  F+         ++KIVACD 
Subjt:  TFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK-GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDS

Query:  K
        K
Subjt:  K

O74948 Transcription initiation factor IIA subunit 2

3.8e-27

53.54

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Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSK
        +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMT+AL  +V+S++T KGHL TYRFCD VWTFI+++ SF+ ++ + T  +I+IVAC ++
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSK

Q0DLD3 Transcription initiation factor IIA subunit 2

2.3e-48

87.74

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMT+ALE+QVKSKV+IKGHLHTYRFCDNVWTFIL +ASFKNE+++E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

Q39236 Transcription initiation factor IIA subunit 2

3.9e-48

87.74

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMT+ALESQVK+KV+IKGHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

Arabidopsis top hits

e value

%identity

Alignment

AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

2.8e-49

87.74

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMT+ALESQVK+KV+IKGHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

AT4G24440.2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

2.8e-49

87.74

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMT+ALESQVK+KV+IKGHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

Sequences

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CDS sequence

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mRNA sequence

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ATGGCAACATTTGAACTCTACCGCAGATCAACGATTGGAATGTGTTTGACTGAAACTTTGGATGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCCATTCAGGT
TCTTGTCCAGTTCGATAAGTCGATGACTGATGCTTTGGAATCACAAGTGAAAAGCAAGGTGACTATCAAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGA
CATTCATTTTGCAGGATGCCTCATTTAAAAATGAGGATTCAAGTGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTTTCACAATAAGCTCTCATA
CATCAGTTCTATTCAATGAAATTTGCATAGTTATTTGCTGATGATGGAGCGAATTCAGTCACGGTGAGGAGGAAATGACCATCCAGGAAGTGATTCAAACGTGATTCTGT
AAAGTCATCAACCTGAACGGCAAAAAGTTGCATTGACGATACATAGACTGAAATTGGCTTCTAAAGTTGATTACATAACAATTACGCGATCCTTCTTCTAGTTAACGATA
ATAAAACATGATATATGTTTCCATATTATGCTATTAATTTCTTGTTGTACTAGTTCCTTTGAATCTACTTTCTGTACATTAGAATTCAAATTACCACTTCGAAAGGAATA
AACTTGATTGGAACTACTTATTAGTCATTATTTCAGTATCATTGATGTTAGGTTCGGGAGCAAACATTATTGGATAATAAGAAAGAATCAAACATTTTCCACATTTTTTT
ATAGCAGACTTTCTTCAATATTCGTTTGCTAGGGGAATCATCATGATTCATGTCAAC

Protein sequence

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MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ

Pay0002003 (gene) of Melon (Payzawat) v1 genome