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Pay0002108 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0002108
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionPolygalacturonase
Genome locationchr03:26431218..26434125
RNA-Seq ExpressionPay0002108
SyntenyPay0002108
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
GO:0030246 - carbohydrate binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052981.1 alpha-glucosidase 2 [Cucumis melo var. makuwa]2.6e-0984.62Show/hide
Query:  SKIDAWGTDGEVLEVTFPSEQEVADLVATSEKEYHHRLD
        +KIDAWGTDG+VL+VTFPS QEVADLVATSEKEYHH+L+
Subjt:  SKIDAWGTDGEVLEVTFPSEQEVADLVATSEKEYHHRLD
TYK15622.1 polygalacturonase [Cucumis melo var. makuwa]2.6e-0957.75Show/hide
Query:  KSKQGAGSGHGSGPAPSPFPDYIQSQS-IFNILFFGAKGNGVSDDSK--IDAWGTDGEVLEVT--FPSEQE
        + ++G G+GHGSGPAP+P P Y QSQS IFNIL FGAKGNGVSDDSK  + AW    E+   T   PS+ +
Subjt:  KSKQGAGSGHGSGPAPSPFPDYIQSQS-IFNILFFGAKGNGVSDDSK--IDAWGTDGEVLEVT--FPSEQE
XP_008446184.2 PREDICTED: polygalacturonase At1g48100 [Cucumis melo]2.6e-0957.75Show/hide
Query:  KSKQGAGSGHGSGPAPSPFPDYIQSQS-IFNILFFGAKGNGVSDDSK--IDAWGTDGEVLEVT--FPSEQE
        + ++G G+GHGSGPAP+P P Y QSQS IFNIL FGAKGNGVSDDSK  + AW    E+   T   PS+ +
Subjt:  KSKQGAGSGHGSGPAPSPFPDYIQSQS-IFNILFFGAKGNGVSDDSK--IDAWGTDGEVLEVT--FPSEQE
XP_008448578.1 PREDICTED: alpha-glucosidase 2 [Cucumis melo]2.6e-0984.62Show/hide
Query:  SKIDAWGTDGEVLEVTFPSEQEVADLVATSEKEYHHRLD
        +KIDAWGTDG+VL+VTFPS QEVADLVATSEKEYHH+L+
Subjt:  SKIDAWGTDGEVLEVTFPSEQEVADLVATSEKEYHHRLD
XP_011650305.1 uncharacterized protein LOC101209387 [Cucumis sativus]8.2e-1183.72Show/hide
Query:  VSDDSKIDAWGTDGEVLEVTFPSEQEVADLVATSEKEYHHRLD
        V   +KIDAWGTDGE+L+VTFPSEQEVADLVATSEKEYHHRL+
Subjt:  VSDDSKIDAWGTDGEVLEVTFPSEQEVADLVATSEKEYHHRLD
TrEMBL top hitse value%identityAlignment
A0A0A0L697 Uncharacterized protein4.0e-1183.72Show/hide
Query:  VSDDSKIDAWGTDGEVLEVTFPSEQEVADLVATSEKEYHHRLD
        V   +KIDAWGTDGE+L+VTFPSEQEVADLVATSEKEYHHRL+
Subjt:  VSDDSKIDAWGTDGEVLEVTFPSEQEVADLVATSEKEYHHRLD
A0A1S3BEF8 polygalacturonase At1g481001.3e-0957.75Show/hide
Query:  KSKQGAGSGHGSGPAPSPFPDYIQSQS-IFNILFFGAKGNGVSDDSK--IDAWGTDGEVLEVT--FPSEQE
        + ++G G+GHGSGPAP+P P Y QSQS IFNIL FGAKGNGVSDDSK  + AW    E+   T   PS+ +
Subjt:  KSKQGAGSGHGSGPAPSPFPDYIQSQS-IFNILFFGAKGNGVSDDSK--IDAWGTDGEVLEVT--FPSEQE
A0A5A7SYE1 Polygalacturonase1.3e-0957.75Show/hide
Query:  KSKQGAGSGHGSGPAPSPFPDYIQSQS-IFNILFFGAKGNGVSDDSK--IDAWGTDGEVLEVT--FPSEQE
        + ++G G+GHGSGPAP+P P Y QSQS IFNIL FGAKGNGVSDDSK  + AW    E+   T   PS+ +
Subjt:  KSKQGAGSGHGSGPAPSPFPDYIQSQS-IFNILFFGAKGNGVSDDSK--IDAWGTDGEVLEVT--FPSEQE
A0A5D3CHL0 Alpha-glucosidase 21.3e-0984.62Show/hide
Query:  SKIDAWGTDGEVLEVTFPSEQEVADLVATSEKEYHHRLD
        +KIDAWGTDG+VL+VTFPS QEVADLVATSEKEYHH+L+
Subjt:  SKIDAWGTDGEVLEVTFPSEQEVADLVATSEKEYHHRLD
A0A5D3CVS9 Polygalacturonase1.3e-0957.75Show/hide
Query:  KSKQGAGSGHGSGPAPSPFPDYIQSQS-IFNILFFGAKGNGVSDDSK--IDAWGTDGEVLEVT--FPSEQE
        + ++G G+GHGSGPAP+P P Y QSQS IFNIL FGAKGNGVSDDSK  + AW    E+   T   PS+ +
Subjt:  KSKQGAGSGHGSGPAPSPFPDYIQSQS-IFNILFFGAKGNGVSDDSK--IDAWGTDGEVLEVT--FPSEQE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G26610.1 Pectin lyase-like superfamily protein4.2e-0553.85Show/hide
Query:  PAPSPFPDYIQSQSIFNILFFGAKGNGVSDDSK--IDAW
        PAP+P+P    ++ +FNI  +GAKG+GVSDDSK  + AW
Subjt:  PAPSPFPDYIQSQSIFNILFFGAKGNGVSDDSK--IDAW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATTGGCATTGGACGTAAAGCTCTTAGTGAAGTGTGGCATTGACATTGGGCTCTTACTAGAGAAGAGCAAGCAGGGTGCTGGCAGTGGTCATGGTTCAGGC
CCTGCACCATCTCCATTTCCTGATTACATTCAATCTCAGTCCATTTTTAATATCTTGTTTTTTGGAGCAAAGGGCAATGGAGTTTCTGATGATTCCAAGATTGAT
GCTTGGGGCACAGATGGAGAAGTTTTGGAAGTGACATTTCCCTCTGAGCAAGAAGTGGCTGACCTGGTAGCCACCAGCGAGAAGGAATATCATCATCGATTAGAC
TATTCCACTGGAAAAAAACATGGCATTGAAAAAAAAACATTTTCCCGCACCGATTCTGGTGAGAGTAAAGAAACCAACAAGAAGCACTCGATAGATGATCAAAGA
AATGATTCTGAAAATGAACTAGACAGCAGCAATTTTGGTATGAAAAGGAAGCATCAGGAAAACAGAAGGTATGAGAGTGATGGTTCTGTTTTTTTGAGGCAACCA
TCGAAGTCTAGAGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGACATTGGCATTGGACGTAAAGCTCTTAGTGAAGTGTGGCATTGACATTGGGCTCTTACTAGAGAAGAGCAAGCAGGGTGCTGGCAGTGGTCATGGTTCAGGC
CCTGCACCATCTCCATTTCCTGATTACATTCAATCTCAGTCCATTTTTAATATCTTGTTTTTTGGAGCAAAGGGCAATGGAGTTTCTGATGATTCCAAGATTGAT
GCTTGGGGCACAGATGGAGAAGTTTTGGAAGTGACATTTCCCTCTGAGCAAGAAGTGGCTGACCTGGTAGCCACCAGCGAGAAGGAATATCATCATCGATTAGAC
TATTCCACTGGAAAAAAACATGGCATTGAAAAAAAAACATTTTCCCGCACCGATTCTGGTGAGAGTAAAGAAACCAACAAGAAGCACTCGATAGATGATCAAAGA
AATGATTCTGAAAATGAACTAGACAGCAGCAATTTTGGTATGAAAAGGAAGCATCAGGAAAACAGAAGGTATGAGAGTGATGGTTCTGTTTTTTTGAGGCAACCA
TCGAAGTCTAGAGACTAA
Protein sequenceShow/hide protein sequence
MTLALDVKLLVKCGIDIGLLLEKSKQGAGSGHGSGPAPSPFPDYIQSQSIFNILFFGAKGNGVSDDSKIDAWGTDGEVLEVTFPSEQEVADLVATSEKEYHHRLD
YSTGKKHGIEKKTFSRTDSGESKETNKKHSIDDQRNDSENELDSSNFGMKRKHQENRRYESDGSVFLRQPSKSRD