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Pay0002231 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0002231
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationchr01:23648265..23649146
RNA-Seq ExpressionPay0002231
SyntenyPay0002231
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067001.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.8e-6862.4Show/hide
Query:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ
        MKMCE LQANVLLEKF PSWN YRNHLKHKKKDLKLQELISHMRTEEANRLKD LASQNLNS N NLVESS +NRDRTKQEKGHKGKNSEKRQFKT GGQ
Subjt:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ

Query:  IKKKKLVCYV------------------------------------------------------------------------------------NLVSGS
        I+KKKLVCYV                                                                                    NLVSGS
Subjt:  IKKKKLVCYV------------------------------------------------------------------------------------NLVSGS

Query:  LLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL
        LLNR GLKIVLEGDKVVLTKNGDF+GKGYLSNGLFVLNTISMNANASSSAY+IESANL
Subjt:  LLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL

TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]6.6e-6656.31Show/hide
Query:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ
        MKMCEILQANVLLEKF PSWN YRNHLKHKKKDLKLQELISHMRTEEANRLKD LASQNLNS N NLVESS VNRDRTKQEKGHKGKNSEKRQFKT GGQ
Subjt:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ

Query:  IKKKKLVCYV------------------------------------------------------------------------------------------
        IKKKKLVCYV                                                                                          
Subjt:  IKKKKLVCYV------------------------------------------------------------------------------------------

Query:  -----------------------------NLVSGSLLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL
                                     NLVSGSLLNR GLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAY+IESANL
Subjt:  -----------------------------NLVSGSLLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL

TYK12114.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.3e-6656.31Show/hide
Query:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ
        MKMCEILQANVLLEKF PSWN YRNHLKHKKKDLKLQELISHMRTEEANRLKD LASQNLNS N NLVESS VNRDRTKQEKGHKGKNSEKRQFKT GGQ
Subjt:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ

Query:  IKKKKLVCYV------------------------------------------------------------------------------------------
        IKKKKLVCYV                                                                                          
Subjt:  IKKKKLVCYV------------------------------------------------------------------------------------------

Query:  -----------------------------NLVSGSLLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL
                                     NLVSGSLLNR+GLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAY+IESANL
Subjt:  -----------------------------NLVSGSLLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL

TYK14258.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.3e-6664.58Show/hide
Query:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ
        MKMCEILQANVLLEKFLPSWN YRNHLKHKKKDLKL+ELISHMRTEEANRLKD LA++NLNS N NLVE SIVNRDRTKQEKG+KGKNSEKRQFK  GGQ
Subjt:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ

Query:  IKKKKLVCYV------------------------------------------------------------------NLVSGSLLNRIGLKIVLEGDKVVL
        IKKKKLVCYV                                                                  NLVS SLLNR GLKI+LEG KV L
Subjt:  IKKKKLVCYV------------------------------------------------------------------NLVSGSLLNRIGLKIVLEGDKVVL

Query:  TKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL
        TKN DF+GKGYLSNGLFVLNTISMNANASSSAYVIES NL
Subjt:  TKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL

XP_016902969.1 PREDICTED: uncharacterized protein LOC107991967 [Cucumis melo]1.7e-7489.66Show/hide
Query:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ
        MKMCEILQANVLLEKF  SWN YRNHLKHKK+DLKLQELISHMRTEEANRLKD LASQNLNS N NLVESS VNRDRTKQEKGHKGKNSEKRQFKT GGQ
Subjt:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ

Query:  IKKKKLVCYVNLVSGSLLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL
        IKKK+     NLVSGSLLNR+GLKIVLEGDKV+LTKNGDFVGKGYLSNGLFVLNTISMNANASSSAY+IESANL
Subjt:  IKKKKLVCYVNLVSGSLLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL

TrEMBL top hitse value%identityAlignment
A0A1S4E418 uncharacterized protein LOC1079919678.4e-7589.66Show/hide
Query:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ
        MKMCEILQANVLLEKF  SWN YRNHLKHKK+DLKLQELISHMRTEEANRLKD LASQNLNS N NLVESS VNRDRTKQEKGHKGKNSEKRQFKT GGQ
Subjt:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ

Query:  IKKKKLVCYVNLVSGSLLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL
        IKKK+     NLVSGSLLNR+GLKIVLEGDKV+LTKNGDFVGKGYLSNGLFVLNTISMNANASSSAY+IESANL
Subjt:  IKKKKLVCYVNLVSGSLLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL

A0A5A7VMV9 Ty1-copia retrotransposon protein8.9e-6962.4Show/hide
Query:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ
        MKMCE LQANVLLEKF PSWN YRNHLKHKKKDLKLQELISHMRTEEANRLKD LASQNLNS N NLVESS +NRDRTKQEKGHKGKNSEKRQFKT GGQ
Subjt:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ

Query:  IKKKKLVCYV------------------------------------------------------------------------------------NLVSGS
        I+KKKLVCYV                                                                                    NLVSGS
Subjt:  IKKKKLVCYV------------------------------------------------------------------------------------NLVSGS

Query:  LLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL
        LLNR GLKIVLEGDKVVLTKNGDF+GKGYLSNGLFVLNTISMNANASSSAY+IESANL
Subjt:  LLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL

A0A5D3CLR6 Ty1-copia retrotransposon protein1.1e-6656.31Show/hide
Query:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ
        MKMCEILQANVLLEKF PSWN YRNHLKHKKKDLKLQELISHMRTEEANRLKD LASQNLNS N NLVESS VNRDRTKQEKGHKGKNSEKRQFKT GGQ
Subjt:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ

Query:  IKKKKLVCYV------------------------------------------------------------------------------------------
        IKKKKLVCYV                                                                                          
Subjt:  IKKKKLVCYV------------------------------------------------------------------------------------------

Query:  -----------------------------NLVSGSLLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL
                                     NLVSGSLLNR+GLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAY+IESANL
Subjt:  -----------------------------NLVSGSLLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL

A0A5D3CST3 Ty1-copia retrotransposon protein6.4e-6764.58Show/hide
Query:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ
        MKMCEILQANVLLEKFLPSWN YRNHLKHKKKDLKL+ELISHMRTEEANRLKD LA++NLNS N NLVE SIVNRDRTKQEKG+KGKNSEKRQFK  GGQ
Subjt:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ

Query:  IKKKKLVCYV------------------------------------------------------------------NLVSGSLLNRIGLKIVLEGDKVVL
        IKKKKLVCYV                                                                  NLVS SLLNR GLKI+LEG KV L
Subjt:  IKKKKLVCYV------------------------------------------------------------------NLVSGSLLNRIGLKIVLEGDKVVL

Query:  TKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL
        TKN DF+GKGYLSNGLFVLNTISMNANASSSAYVIES NL
Subjt:  TKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL

A0A5D3DSQ3 Ty1-copia retrotransposon protein3.2e-6656.31Show/hide
Query:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ
        MKMCEILQANVLLEKF PSWN YRNHLKHKKKDLKLQELISHMRTEEANRLKD LASQNLNS N NLVESS VNRDRTKQEKGHKGKNSEKRQFKT GGQ
Subjt:  MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQ

Query:  IKKKKLVCYV------------------------------------------------------------------------------------------
        IKKKKLVCYV                                                                                          
Subjt:  IKKKKLVCYV------------------------------------------------------------------------------------------

Query:  -----------------------------NLVSGSLLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL
                                     NLVSGSLLNR GLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAY+IESANL
Subjt:  -----------------------------NLVSGSLLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTGTTGGAAAAGTTTCTTCCATCCTGGAATCACTATCGTAATCATCTCAAGCACAAGAAGAAGGATCTAAAG
CTCCAGGAACTCATCAGTCACATGCGCACGGAAGAAGCCAATAGACTGAAAGATATGTTAGCCTCCCAAAATTTAAATTCAGCTAATGTTAACTTAGTCGAATCG
TCTATTGTAAACAGAGACAGAACCAAGCAGGAAAAAGGGCATAAAGGAAAAAACTCAGAGAAGAGACAGTTCAAGACTCATGGGGGACAAATTAAGAAGAAAAAG
CTGGTCTGTTACGTGAACCTGGTGTCTGGGAGTCTGTTGAATCGGATCGGGCTTAAAATTGTACTAGAAGGTGACAAAGTTGTCCTCACCAAAAATGGAGATTTT
GTCGGTAAGGGGTATCTGTCTAATGGTCTATTTGTGCTAAACACAATTTCCATGAATGCAAATGCTTCTAGTTCTGCTTACGTGATTGAATCTGCTAACTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTGTTGGAAAAGTTTCTTCCATCCTGGAATCACTATCGTAATCATCTCAAGCACAAGAAGAAGGATCTAAAG
CTCCAGGAACTCATCAGTCACATGCGCACGGAAGAAGCCAATAGACTGAAAGATATGTTAGCCTCCCAAAATTTAAATTCAGCTAATGTTAACTTAGTCGAATCG
TCTATTGTAAACAGAGACAGAACCAAGCAGGAAAAAGGGCATAAAGGAAAAAACTCAGAGAAGAGACAGTTCAAGACTCATGGGGGACAAATTAAGAAGAAAAAG
CTGGTCTGTTACGTGAACCTGGTGTCTGGGAGTCTGTTGAATCGGATCGGGCTTAAAATTGTACTAGAAGGTGACAAAGTTGTCCTCACCAAAAATGGAGATTTT
GTCGGTAAGGGGTATCTGTCTAATGGTCTATTTGTGCTAAACACAATTTCCATGAATGCAAATGCTTCTAGTTCTGCTTACGTGATTGAATCTGCTAACTTATGA
Protein sequenceShow/hide protein sequence
MKMCEILQANVLLEKFLPSWNHYRNHLKHKKKDLKLQELISHMRTEEANRLKDMLASQNLNSANVNLVESSIVNRDRTKQEKGHKGKNSEKRQFKTHGGQIKKKK
LVCYVNLVSGSLLNRIGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYVIESANL