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Pay0002232 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0002232
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr02:6216703..6217306
RNA-Seq ExpressionPay0002232
SyntenyPay0002232
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053951.1 flocculation protein FLO11-like [Cucumis melo var. makuwa]2.0e-3660Show/hide
Query:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQALVPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVS
        MDVKSA +N +++EEVYV+QPKGF DL++ D+VYKL+KALY LKQA           +  + ++GIF SQEKYA+NLI K+ ++ AK KRTPAAT +K++
Subjt:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQALVPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVS

Query:  TDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY
         D  GKKVD + YR IIG+LLYLTAS PDIA+VVGVCA Y
Subjt:  TDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY

KAA0067204.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.0e-6999.27Show/hide
Query:  KSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQALVPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVSTDE
        +SAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQALVPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVSTDE
Subjt:  KSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQALVPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVSTDE

Query:  NGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY
        NGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY
Subjt:  NGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY

TYJ96615.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.0e-3660.99Show/hide
Query:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQAL-VPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKV
        MDVKSAFLNG+++EEVYVSQPKGF D V+ D+VYKL KA Y LKQAL    +T +L  +I+Q ETGIF SQEKYA+N + K+  + AK+KRT AAT +K+
Subjt:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQAL-VPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKV

Query:  STDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY
        + D  G+KVD SLYR  IGS LYL AS  DI + +GVCA Y
Subjt:  STDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY

TYJ97126.1 gag-pol polyprotein [Cucumis melo var. makuwa]4.7e-3861.81Show/hide
Query:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQAL---VPDMTAYLLN-KIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQ
        MDVKSAFLNG++ EEVYV+QPKGF D  +P +VYKL KALY LKQAL      +T YL   +I+Q   GIFISQEKY R+++KK+ LE A+ KRTPAAT 
Subjt:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQAL---VPDMTAYLLN-KIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQ

Query:  IKVSTDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY
        +K++ D  G KVD  LYR I GSLLYLTAS PDIAY +G+ A Y
Subjt:  IKVSTDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY

XP_016900881.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]1.9e-71100Show/hide
Query:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQALVPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVS
        MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQALVPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVS
Subjt:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQALVPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVS

Query:  TDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY
        TDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY
Subjt:  TDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY

TrEMBL top hitse value%identityAlignment
A0A1S4DY21 uncharacterized mitochondrial protein AtMg00810-like9.1e-72100Show/hide
Query:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQALVPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVS
        MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQALVPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVS
Subjt:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQALVPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVS

Query:  TDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY
        TDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY
Subjt:  TDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY

A0A5A7UK92 Flocculation protein FLO11-like9.5e-3760Show/hide
Query:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQALVPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVS
        MDVKSA +N +++EEVYV+QPKGF DL++ D+VYKL+KALY LKQA           +  + ++GIF SQEKYA+NLI K+ ++ AK KRTPAAT +K++
Subjt:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQALVPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVS

Query:  TDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY
         D  GKKVD + YR IIG+LLYLTAS PDIA+VVGVCA Y
Subjt:  TDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY

A0A5A7VIM0 Putative mitochondrial protein1.5e-6999.27Show/hide
Query:  KSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQALVPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVSTDE
        +SAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQALVPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVSTDE
Subjt:  KSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQALVPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVSTDE

Query:  NGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY
        NGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY
Subjt:  NGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY

A0A5D3BDQ5 Gag-pol polyprotein2.3e-3861.81Show/hide
Query:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQAL---VPDMTAYLLN-KIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQ
        MDVKSAFLNG++ EEVYV+QPKGF D  +P +VYKL KALY LKQAL      +T YL   +I+Q   GIFISQEKY R+++KK+ LE A+ KRTPAAT 
Subjt:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQAL---VPDMTAYLLN-KIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQ

Query:  IKVSTDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY
        +K++ D  G KVD  LYR I GSLLYLTAS PDIAY +G+ A Y
Subjt:  IKVSTDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY

A0A5D3BDS2 Gag-pol polyprotein9.5e-3760.99Show/hide
Query:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQAL-VPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKV
        MDVKSAFLNG+++EEVYVSQPKGF D V+ D+VYKL KA Y LKQAL    +T +L  +I+Q ETGIF SQEKYA+N + K+  + AK+KRT AAT +K+
Subjt:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQAL-VPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKV

Query:  STDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY
        + D  G+KVD SLYR  IGS LYL AS  DI + +GVCA Y
Subjt:  STDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.7e-0625.58Show/hide
Query:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQA-------------------------------------------------LVPDM
        MDVK+AFLNG + EE+Y+  P+G       D V KL KA+Y LKQA                                                    DM
Subjt:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQA-------------------------------------------------LVPDM

Query:  T------AYLLNK----------------IQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIK---VSTDENGKKVDESLYRIIIGSLLY-LTA
        T       YL+ K                I+  E  I++SQ  Y + ++ K+N+E+     TP  ++I    +++DE+      SL    IG L+Y +  
Subjt:  T------AYLLNK----------------IQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIK---VSTDENGKKVDESLYRIIIGSLLY-LTA

Query:  SHPDIAYVVGVCAHY
        + PD+   V + + Y
Subjt:  SHPDIAYVVGVCAHY

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-948.1e-0925.11Show/hide
Query:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQA------------------------------------------------------
        +DVK+AFL+G + EE+Y+ QP+GFE       V KL K+LY LKQA                                                      
Subjt:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQA------------------------------------------------------

Query:  LVPDMTAYLLNKIQQHETG------------------IFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVS------TDENGKKVDESLYRIIIGSLLY
        L+  +   L       + G                  +++SQEKY   +++++N+++AK   TP A  +K+S      T E    + +  Y   +GSL+Y
Subjt:  LVPDMTAYLLNKIQQHETG------------------IFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVS------TDENGKKVDESLYRIIIGSLLY

Query:  -LTASHPDIAYVVGVCAHY
         +  + PDIA+ VGV + +
Subjt:  -LTASHPDIAYVVGVCAHY

P92519 Uncharacterized mitochondrial protein AtMg008104.4e-0736.71Show/hide
Query:  KIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVSTDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGV
        +I+ H +G+F+SQ KYA  ++    + D K   TP   ++  S+    K  D S +R I+G+L YLT + PDI+Y V +
Subjt:  KIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVSTDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.9e-1430.54Show/hide
Query:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQA-------------------LVPDMTAYLLNK-----------------------
        +DV +AFL G +T++VY+SQP GF D   P+YV KL+KALY LKQA                    V D + ++L +                       
Subjt:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQA-------------------LVPDMTAYLLNK-----------------------

Query:  -------------IQQHE--------------TGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVSTDENGKKVDESLYRIIIGSLLYLTASHPDIA
                     ++ HE              TG+ +SQ +Y  +L+ + N+  AK   TP A   K+S     K  D + YR I+GSL YL  + PDI+
Subjt:  -------------IQQHE--------------TGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVSTDENGKKVDESLYRIIIGSLLYLTASHPDIA

Query:  YVV
        Y V
Subjt:  YVV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE29.8e-1528.71Show/hide
Query:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQA-------------------LVPDMTAYLLNK-----------------------
        +DV +AFL G +T+EVY+SQP GF D   PDYV +L+KA+Y LKQA                    + D + ++L +                       
Subjt:  MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQA-------------------LVPDMTAYLLNK-----------------------

Query:  -------------IQQHE--------------TGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVSTDENGKKVDESLYRIIIGSLLYLTASHPDIA
                     +++HE               G+ +SQ +Y  +L+ + N+  AK   TP AT  K++     K  D + YR I+GSL YL  + PD++
Subjt:  -------------IQQHE--------------TGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVSTDENGKKVDESLYRIIIGSLLYLTASHPDIA

Query:  YVVGVCAHY
        Y V   + Y
Subjt:  YVVGVCAHY

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.3e-0623.47Show/hide
Query:  MDVKSAFLNGFITEEVYVSQPKGFE----DLVYPDYVYKLKKALYCLKQ---------------------------------------------------
        +D+ +AFLNG + EE+Y+  P G+     D + P+ V  LKK++Y LKQ                                                   
Subjt:  MDVKSAFLNGFITEEVYVSQPKGFE----DLVYPDYVYKLKKALYCLKQ---------------------------------------------------

Query:  --ALVPDMTAYLLN----------------KIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVSTDENGKKVDESLYRIIIGSLLYLTASH
          A V ++ + L +                +I +   GI I Q KYA +L+ +  L   K    P    +  S    G  VD   YR +IG L+YL  + 
Subjt:  --ALVPDMTAYLLN----------------KIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVSTDENGKKVDESLYRIIIGSLLYLTASH

Query:  PDIAYVVGVCAHY
         DI++ V   + +
Subjt:  PDIAYVVGVCAHY

ATMG00810.1 DNA/RNA polymerases superfamily protein3.1e-0836.71Show/hide
Query:  KIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVSTDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGV
        +I+ H +G+F+SQ KYA  ++    + D K   TP   ++  S+    K  D S +R I+G+L YLT + PDI+Y V +
Subjt:  KIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVSTDENGKKVDESLYRIIIGSLLYLTASHPDIAYVVGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTGAAAAGCGCATTCCTCAATGGGTTTATTACAGAAGAAGTCTATGTTTCACAACCTAAAGGCTTTGAAGATCTTGTATATCCAGATTATGTATATAAA
CTGAAGAAGGCCTTGTATTGTCTCAAACAAGCTCTCGTGCCTGATATGACCGCCTATCTGTTAAATAAGATTCAGCAGCATGAAACAGGTATATTTATTTCACAA
GAAAAATATGCACGAAATTTGATTAAAAAGTATAATCTTGAAGATGCCAAGGTGAAGCGTACCCCTGCTGCCACACAAATTAAAGTTTCTACAGATGAGAATGGA
AAGAAAGTGGATGAAAGCCTCTATCGCATTATTATTGGTAGTCTATTGTATCTCACTGCAAGTCACCCAGATATAGCCTATGTCGTTGGAGTTTGTGCTCACTAT
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTGAAAAGCGCATTCCTCAATGGGTTTATTACAGAAGAAGTCTATGTTTCACAACCTAAAGGCTTTGAAGATCTTGTATATCCAGATTATGTATATAAA
CTGAAGAAGGCCTTGTATTGTCTCAAACAAGCTCTCGTGCCTGATATGACCGCCTATCTGTTAAATAAGATTCAGCAGCATGAAACAGGTATATTTATTTCACAA
GAAAAATATGCACGAAATTTGATTAAAAAGTATAATCTTGAAGATGCCAAGGTGAAGCGTACCCCTGCTGCCACACAAATTAAAGTTTCTACAGATGAGAATGGA
AAGAAAGTGGATGAAAGCCTCTATCGCATTATTATTGGTAGTCTATTGTATCTCACTGCAAGTCACCCAGATATAGCCTATGTCGTTGGAGTTTGTGCTCACTAT
TAA
Protein sequenceShow/hide protein sequence
MDVKSAFLNGFITEEVYVSQPKGFEDLVYPDYVYKLKKALYCLKQALVPDMTAYLLNKIQQHETGIFISQEKYARNLIKKYNLEDAKVKRTPAATQIKVSTDENG
KKVDESLYRIIIGSLLYLTASHPDIAYVVGVCAHY