; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0002918 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0002918
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr04:6022337..6023558
RNA-Seq ExpressionPay0002918
SyntenyPay0002918
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.2e-6650.61Show/hide
Query:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSM------------------RTLQGIFSSRFLAQAMQFKNKLHNIKKESM
        +ENFLESES+PPSKYL S  SSS  AT TPN  YKVWKR DRLISSWLLGSM                   TLQGIFSSR+LAQAMQFKNKLHNIKK SM
Subjt:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSM------------------RTLQGIFSSRFLAQAMQFKNKLHNIKKESM

Query:  PLKEYFLKI-------------------------------------------------------------------------------------------
        PLKEYFLKI                                                                                           
Subjt:  PLKEYFLKI-------------------------------------------------------------------------------------------

Query:  -------------QSGRGNGRSNMGGKGNRNKPQCQICTKFGHSVDR-------------YSPNSHNTSYTNMNNHPQMSAMVASSNLNIDSNWYSDSGA
                     + GRGNGRSN G +GNRNKPQCQIC K G+S DR             YSPNSHNTSYTNMNNHPQMSAMVA+ +LNIDSNWY DSGA
Subjt:  -------------QSGRGNGRSNMGGKGNRNKPQCQICTKFGHSVDR-------------YSPNSHNTSYTNMNNHPQMSAMVASSNLNIDSNWYSDSGA

Query:  TNHLTYSLSNLSIGSEYGGGNQIYAANGSG
        TNHLT+SLSNLSIGSEYGGGNQIYAANGSG
Subjt:  TNHLTYSLSNLSIGSEYGGGNQIYAANGSG

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]1.7e-3172.73Show/hide
Query:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSMR------------------TLQGIFSSRFLAQAMQFKNKLHNIKKESM
        +ENFLESES+PPSKYL S GSSS  ATRTPN  YKVWKR DRLISSWLLGSM                   TLQGIFSSR+LAQAM+FKNKLHNIKKESM
Subjt:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSMR------------------TLQGIFSSRFLAQAMQFKNKLHNIKKESM

Query:  PLKEYFLKIQ
        PLKEYFLKIQ
Subjt:  PLKEYFLKIQ

KAA0068024.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.6e-3751.28Show/hide
Query:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSMRTLQGIFSSRFLAQAMQFKNKLHNIKKESMPLKEYFLKIQSGRGNGRS
        MENFLESES+PP+KYLTS GSSST ATRTPN EYK  +   +LIS   L S+  +         +     +N  HN          +    + GRGNGRS
Subjt:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSMRTLQGIFSSRFLAQAMQFKNKLHNIKKESMPLKEYFLKIQSGRGNGRS

Query:  NMGGKGNRNKPQCQICTKFGHSVDRYSPNSHNTSYTNMNNHPQMSAMVASSNLNIDSNWYSDSGATNHLTYSLSNLSIGSEYGGGNQIYAANGSG
        N GG+GNRNKPQCQICTK GHS                                 DSNWY DSGATNHLT+SLSNLS GSEYGGGNQIY ANGSG
Subjt:  NMGGKGNRNKPQCQICTKFGHSVDRYSPNSHNTSYTNMNNHPQMSAMVASSNLNIDSNWYSDSGATNHLTYSLSNLSIGSEYGGGNQIYAANGSG

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.2e-6650.61Show/hide
Query:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSM------------------RTLQGIFSSRFLAQAMQFKNKLHNIKKESM
        +ENFLESES+PPSKYL S  SSS  AT TPN  YKVWKR DRLISSWLLGSM                   TLQGIFSSR+LAQAMQFKNKLHNIKK SM
Subjt:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSM------------------RTLQGIFSSRFLAQAMQFKNKLHNIKKESM

Query:  PLKEYFLKI-------------------------------------------------------------------------------------------
        PLKEYFLKI                                                                                           
Subjt:  PLKEYFLKI-------------------------------------------------------------------------------------------

Query:  -------------QSGRGNGRSNMGGKGNRNKPQCQICTKFGHSVDR-------------YSPNSHNTSYTNMNNHPQMSAMVASSNLNIDSNWYSDSGA
                     + GRGNGRSN G +GNRNKPQCQIC K G+S DR             YSPNSHNTSYTNMNNHPQMSAMVA+ +LNIDSNWY DSGA
Subjt:  -------------QSGRGNGRSNMGGKGNRNKPQCQICTKFGHSVDR-------------YSPNSHNTSYTNMNNHPQMSAMVASSNLNIDSNWYSDSGA

Query:  TNHLTYSLSNLSIGSEYGGGNQIYAANGSG
        TNHLT+SLSNLSIGSEYGGGNQIYAANGSG
Subjt:  TNHLTYSLSNLSIGSEYGGGNQIYAANGSG

TYK18917.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]1.7e-3172.73Show/hide
Query:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSMR------------------TLQGIFSSRFLAQAMQFKNKLHNIKKESM
        +ENFLESES+PPSKYL S GSSS  ATRTPN  YKVWKR DRLISSWLLGSM                   TLQGIFSSR+LAQAM+FKNKLHNIKKESM
Subjt:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSMR------------------TLQGIFSSRFLAQAMQFKNKLHNIKKESM

Query:  PLKEYFLKIQ
        PLKEYFLKIQ
Subjt:  PLKEYFLKIQ

TrEMBL top hitse value%identityAlignment
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-945.9e-6750.61Show/hide
Query:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSM------------------RTLQGIFSSRFLAQAMQFKNKLHNIKKESM
        +ENFLESES+PPSKYL S  SSS  AT TPN  YKVWKR DRLISSWLLGSM                   TLQGIFSSR+LAQAMQFKNKLHNIKK SM
Subjt:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSM------------------RTLQGIFSSRFLAQAMQFKNKLHNIKKESM

Query:  PLKEYFLKI-------------------------------------------------------------------------------------------
        PLKEYFLKI                                                                                           
Subjt:  PLKEYFLKI-------------------------------------------------------------------------------------------

Query:  -------------QSGRGNGRSNMGGKGNRNKPQCQICTKFGHSVDR-------------YSPNSHNTSYTNMNNHPQMSAMVASSNLNIDSNWYSDSGA
                     + GRGNGRSN G +GNRNKPQCQIC K G+S DR             YSPNSHNTSYTNMNNHPQMSAMVA+ +LNIDSNWY DSGA
Subjt:  -------------QSGRGNGRSNMGGKGNRNKPQCQICTKFGHSVDR-------------YSPNSHNTSYTNMNNHPQMSAMVASSNLNIDSNWYSDSGA

Query:  TNHLTYSLSNLSIGSEYGGGNQIYAANGSG
        TNHLT+SLSNLSIGSEYGGGNQIYAANGSG
Subjt:  TNHLTYSLSNLSIGSEYGGGNQIYAANGSG

A0A5A7VGJ8 Keratin, type II cytoskeletal 1-like8.0e-3272.73Show/hide
Query:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSMR------------------TLQGIFSSRFLAQAMQFKNKLHNIKKESM
        +ENFLESES+PPSKYL S GSSS  ATRTPN  YKVWKR DRLISSWLLGSM                   TLQGIFSSR+LAQAM+FKNKLHNIKKESM
Subjt:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSMR------------------TLQGIFSSRFLAQAMQFKNKLHNIKKESM

Query:  PLKEYFLKIQ
        PLKEYFLKIQ
Subjt:  PLKEYFLKIQ

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-945.9e-6750.61Show/hide
Query:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSM------------------RTLQGIFSSRFLAQAMQFKNKLHNIKKESM
        +ENFLESES+PPSKYL S  SSS  AT TPN  YKVWKR DRLISSWLLGSM                   TLQGIFSSR+LAQAMQFKNKLHNIKK SM
Subjt:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSM------------------RTLQGIFSSRFLAQAMQFKNKLHNIKKESM

Query:  PLKEYFLKI-------------------------------------------------------------------------------------------
        PLKEYFLKI                                                                                           
Subjt:  PLKEYFLKI-------------------------------------------------------------------------------------------

Query:  -------------QSGRGNGRSNMGGKGNRNKPQCQICTKFGHSVDR-------------YSPNSHNTSYTNMNNHPQMSAMVASSNLNIDSNWYSDSGA
                     + GRGNGRSN G +GNRNKPQCQIC K G+S DR             YSPNSHNTSYTNMNNHPQMSAMVA+ +LNIDSNWY DSGA
Subjt:  -------------QSGRGNGRSNMGGKGNRNKPQCQICTKFGHSVDR-------------YSPNSHNTSYTNMNNHPQMSAMVASSNLNIDSNWYSDSGA

Query:  TNHLTYSLSNLSIGSEYGGGNQIYAANGSG
        TNHLT+SLSNLSIGSEYGGGNQIYAANGSG
Subjt:  TNHLTYSLSNLSIGSEYGGGNQIYAANGSG

A0A5D3D3G2 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-3751.28Show/hide
Query:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSMRTLQGIFSSRFLAQAMQFKNKLHNIKKESMPLKEYFLKIQSGRGNGRS
        MENFLESES+PP+KYLTS GSSST ATRTPN EYK  +   +LIS   L S+  +         +     +N  HN          +    + GRGNGRS
Subjt:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSMRTLQGIFSSRFLAQAMQFKNKLHNIKKESMPLKEYFLKIQSGRGNGRS

Query:  NMGGKGNRNKPQCQICTKFGHSVDRYSPNSHNTSYTNMNNHPQMSAMVASSNLNIDSNWYSDSGATNHLTYSLSNLSIGSEYGGGNQIYAANGSG
        N GG+GNRNKPQCQICTK GHS                                 DSNWY DSGATNHLT+SLSNLS GSEYGGGNQIY ANGSG
Subjt:  NMGGKGNRNKPQCQICTKFGHSVDRYSPNSHNTSYTNMNNHPQMSAMVASSNLNIDSNWYSDSGATNHLTYSLSNLSIGSEYGGGNQIYAANGSG

A0A5D3D5T2 Keratin, type II cytoskeletal 1-like8.0e-3272.73Show/hide
Query:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSMR------------------TLQGIFSSRFLAQAMQFKNKLHNIKKESM
        +ENFLESES+PPSKYL S GSSS  ATRTPN  YKVWKR DRLISSWLLGSM                   TLQGIFSSR+LAQAM+FKNKLHNIKKESM
Subjt:  MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSMR------------------TLQGIFSSRFLAQAMQFKNKLHNIKKESM

Query:  PLKEYFLKIQ
        PLKEYFLKIQ
Subjt:  PLKEYFLKIQ

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE15.6e-0636.54Show/hide
Query:  SNMGGKGNRNKP---QCQICTKFGHSVDRYSPNSHNTSYTNMNNHP------QMSAMVASSNLNIDSNWYSDSGATNHLTYSLSNLSIGSEYGGGNQIYA
        +N     N++KP   +CQIC   GHS  R S   H  S  N    P      Q  A +A  +    +NW  DSGAT+H+T   +NLS+   Y GG+ +  
Subjt:  SNMGGKGNRNKP---QCQICTKFGHSVDRYSPNSHNTSYTNMNNHP------QMSAMVASSNLNIDSNWYSDSGATNHLTYSLSNLSIGSEYGGGNQIYA

Query:  ANGS
        A+GS
Subjt:  ANGS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAATTTTCTTGAATCTGAATCAAAACCACCATCAAAATATCTCACATCCAATGGAAGTTCATCAACATTTGCTACAAGAACACCAAATACGGAATATAAG
GTATGGAAACGCATAGATCGTCTTATCTCCTCATGGCTTCTAGGGTCTATGAGAACTCTTCAAGGTATTTTCTCTTCCCGTTTCTTAGCTCAAGCTATGCAATTC
AAAAACAAACTTCACAATATAAAGAAAGAATCCATGCCATTAAAAGAATATTTTCTCAAAATACAGAGTGGTCGTGGAAATGGAAGATCAAACATGGGAGGGAAA
GGAAACCGTAATAAGCCACAATGTCAAATCTGTACAAAGTTTGGCCACAGTGTTGATCGTTACTCACCAAACTCACATAATACTTCATATACTAATATGAATAAT
CATCCACAGATGTCTGCTATGGTGGCTTCCTCCAACCTGAATATTGACAGTAATTGGTATTCTGATTCGGGAGCTACAAATCATTTAACTTATAGCTTGAGCAAC
CTATCTATTGGATCTGAGTATGGAGGAGGAAATCAAATATATGCAGCAAATGGGTCAGGATCAGGATACTGGCCAAGTACTTCTTCAAGGACTTCCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAATTTTCTTGAATCTGAATCAAAACCACCATCAAAATATCTCACATCCAATGGAAGTTCATCAACATTTGCTACAAGAACACCAAATACGGAATATAAG
GTATGGAAACGCATAGATCGTCTTATCTCCTCATGGCTTCTAGGGTCTATGAGAACTCTTCAAGGTATTTTCTCTTCCCGTTTCTTAGCTCAAGCTATGCAATTC
AAAAACAAACTTCACAATATAAAGAAAGAATCCATGCCATTAAAAGAATATTTTCTCAAAATACAGAGTGGTCGTGGAAATGGAAGATCAAACATGGGAGGGAAA
GGAAACCGTAATAAGCCACAATGTCAAATCTGTACAAAGTTTGGCCACAGTGTTGATCGTTACTCACCAAACTCACATAATACTTCATATACTAATATGAATAAT
CATCCACAGATGTCTGCTATGGTGGCTTCCTCCAACCTGAATATTGACAGTAATTGGTATTCTGATTCGGGAGCTACAAATCATTTAACTTATAGCTTGAGCAAC
CTATCTATTGGATCTGAGTATGGAGGAGGAAATCAAATATATGCAGCAAATGGGTCAGGATCAGGATACTGGCCAAGTACTTCTTCAAGGACTTCCCAATGA
Protein sequenceShow/hide protein sequence
MENFLESESKPPSKYLTSNGSSSTFATRTPNTEYKVWKRIDRLISSWLLGSMRTLQGIFSSRFLAQAMQFKNKLHNIKKESMPLKEYFLKIQSGRGNGRSNMGGK
GNRNKPQCQICTKFGHSVDRYSPNSHNTSYTNMNNHPQMSAMVASSNLNIDSNWYSDSGATNHLTYSLSNLSIGSEYGGGNQIYAANGSGSGYWPSTSSRTSQ