CuGenDBv2

Gene ID	Pay0003171
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Genome location	chr01:35519648..35520136
RNA-Seq Expression	Pay0003171
Synteny	Pay0003171
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008194 - UDP-glycosyltransferase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR016197 - Chromo-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031437.1 pol protein [Cucumis melo var. makuwa]

8.2e-67

85.19

Show/hide

Query:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP
        MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG                      RIGPVAYRLALPPS AAVHDVFHISMLRKYVADPTHVVDFEP
Subjt:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP

Query:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        LQ+SENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

KAA0032541.1 pol protein [Cucumis melo var. makuwa]

6.2e-67

85.8

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Query:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP
        MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG                      RIGPVAYRLALPPS AAVHDVFHISMLRKYVADPTHVVDFEP
Subjt:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP

Query:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

KAA0048651.1 pol protein [Cucumis melo var. makuwa]

6.2e-67

85.8

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Query:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP
        MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG                      RIGPVAYRLALPPS AAVHDVFHISMLRKYVADPTHVVDFEP
Subjt:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP

Query:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

KAA0061201.1 pol protein [Cucumis melo var. makuwa]

6.2e-67

85.8

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Query:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP
        MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG                      RIGPVAYRLALPPS AAVHDVFHISMLRKYVADPTHVVDFEP
Subjt:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP

Query:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

KAA0063116.1 pol protein [Cucumis melo var. makuwa]

6.2e-67

85.8

Show/hide

Query:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP
        MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG                      RIGPVAYRLALPPS AAVHDVFHISMLRKYVADPTHVVDFEP
Subjt:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP

Query:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SSL3 Reverse transcriptase

3.0e-67

85.8

Show/hide

Query:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP
        MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG                      RIGPVAYRLALPPS AAVHDVFHISMLRKYVADPTHVVDFEP
Subjt:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP

Query:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

A0A5A7U4Z5 Pol protein

3.0e-67

85.8

Show/hide

Query:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP
        MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG                      RIGPVAYRLALPPS AAVHDVFHISMLRKYVADPTHVVDFEP
Subjt:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP

Query:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

A0A5A7V5X5 Pol protein

3.0e-67

85.8

Show/hide

Query:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP
        MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG                      RIGPVAYRLALPPS AAVHDVFHISMLRKYVADPTHVVDFEP
Subjt:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP

Query:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

A0A5A7V9J8 Pol protein

3.0e-67

85.8

Show/hide

Query:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP
        MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG                      RIGPVAYRLALPPS AAVHDVFHISMLRKYVADPTHVVDFEP
Subjt:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP

Query:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

A0A5D3CQB5 Reverse transcriptase

4.0e-67

85.19

Show/hide

Query:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP
        MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG                      RIGPVAYRLALPPS AAVHDVFHISMLRKYVADPTHVVDFEP
Subjt:  MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEP

Query:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        LQ+SENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  LQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCTGACAGCACAGAGCAGACAGAAGAGTTATGCTGATGTACGACGTAAGGACCTCGAGTTTGAAGTGGGAGATATGGTCTTTCTGAAGGTAGCACCCATGAAGGGTCG
GATTGGCCCCGTGGCTTATCGCTTGGCGCTACCCCCATCCCTTGCGGCAGTGCATGACGTATTCCATATCTCCATGCTGAGGAAATATGTCGCAGACCCAACACATGTGG
TGGACTTCGAGCCACTACAGATTAGCGAGAACTTGAGCTACGAGGAGCAGCCTGTCGAGGTCCTGGCGAGGGAGGTCAAGAAGCTTCGCAGTCGAGAAATTCCACTGGTC
AAAATCCTTTGGCAGAACCATGGAGTGGAAGAGGCCACGTGGGAGAAAGAAGAGGACATGAGAGCCCAGTACCCCGAGCTGTTCGAGGATTAG

mRNA sequence

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Protein sequence

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MLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGRIGPVAYRLALPPSLAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLV
KILWQNHGVEEATWEKEEDMRAQYPELFED

Pay0003171 (gene) of Melon (Payzawat) v1 genome