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Pay0003187 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0003187
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGag-pol polyprotein
Genome locationchr06:10528197..10528871
RNA-Seq ExpressionPay0003187
SyntenyPay0003187
Gene Ontology termsNA
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056162.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.6e-3150Show/hide
Query:  VQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQ---------------------------------------------------EA
        VQI VDDIIFGGTSS YVE+FV QMKGEFE+SMVGELTFFLGFQI+Q                                                     
Subjt:  VQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQ---------------------------------------------------EA

Query:  TASRPDIAFAVGVCDRYQADPCSSHLYSAKHILKYI------------------TGYCDADWDGCSDDQKSTSGGCFF
        TASRPDIAF VGVC RYQAD  +SHL+SAK ILKYI                   GYCDADW  CSDD+KSTS GCFF
Subjt:  TASRPDIAFAVGVCDRYQADPCSSHLYSAKHILKYI------------------TGYCDADWDGCSDDQKSTSGGCFF

KAA0063048.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.9e-3560.53Show/hide
Query:  MFIYRQDIEFLIVQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQE-----------------------------ATASRPDIAFA
        MFIYRQ  EFLIVQI VDDIIFGGTSS YV++FV QMK EFEMSMVGEL+FFLGFQI+QE                              TASRPDIAFA
Subjt:  MFIYRQDIEFLIVQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQE-----------------------------ATASRPDIAFA

Query:  VGVCDRYQADPCSSHLYSAKHILKYITGYCDADWDGCSDDQKSTSGGCFFWG
        VG+  RYQ DP +SHL+SAK I KYI+G       GCSDD KSTS GCFF G
Subjt:  VGVCDRYQADPCSSHLYSAKHILKYITGYCDADWDGCSDDQKSTSGGCFFWG

TYK11892.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.7e-3048.75Show/hide
Query:  KRMFIYRQDIEFLIVQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQEA-----------------TASRPDIAFAVGVCDRYQAD
        K +FI R     ++ QI VDDIIFGG S   V  F+  MK EFEMS+VGEL+ FLG QI+Q++                 TASRPDIA+AVG+C RYQ++
Subjt:  KRMFIYRQDIEFLIVQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQEA-----------------TASRPDIAFAVGVCDRYQAD

Query:  PCSSHLYSAKHILKYI------------------TGYCDADWDGCSDDQKSTSGGCFFWG
        P  SHL + K I+KY+                   GYCDADW G +DDQKSTSGGCFF G
Subjt:  PCSSHLYSAKHILKYI------------------TGYCDADWDGCSDDQKSTSGGCFFWG

TYK16303.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.9e-3560.53Show/hide
Query:  MFIYRQDIEFLIVQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQEAT-----------------------------ASRPDIAFA
        MFIYRQ  EFLIVQI VDDIIFGGTSS YV++FV QMK EFEMSMVGEL+FFLGFQI+QE T                             ASRPDIAFA
Subjt:  MFIYRQDIEFLIVQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQEAT-----------------------------ASRPDIAFA

Query:  VGVCDRYQADPCSSHLYSAKHILKYITGYCDADWDGCSDDQKSTSGGCFFWG
        VG+  RYQ DP +SHL+SAK I KYI+G       GCSDD KSTS GCFF G
Subjt:  VGVCDRYQADPCSSHLYSAKHILKYITGYCDADWDGCSDDQKSTSGGCFFWG

XP_016901893.1 PREDICTED: uncharacterized protein LOC107991459 [Cucumis melo]4.4e-7998.63Show/hide
Query:  MRDSPHICHNKSTSEEAWIKRMFIYRQDIEFLIVQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQEATASRPDIAFAVGVCDRYQ
        MRDSPHI HNKSTSEEAWIKRMFIYRQDIEFLIVQI VDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQEATASRPDIAFAVGVCDRYQ
Subjt:  MRDSPHICHNKSTSEEAWIKRMFIYRQDIEFLIVQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQEATASRPDIAFAVGVCDRYQ

Query:  ADPCSSHLYSAKHILKYITGYCDADWDGCSDDQKSTSGGCFFWGTT
        ADPCSSHLYSAKHILKYITGYCDADWDGCSDDQKSTSGGCFFWGTT
Subjt:  ADPCSSHLYSAKHILKYITGYCDADWDGCSDDQKSTSGGCFFWGTT

TrEMBL top hitse value%identityAlignment
A0A1S4E0Z0 uncharacterized protein LOC1079914592.1e-7998.63Show/hide
Query:  MRDSPHICHNKSTSEEAWIKRMFIYRQDIEFLIVQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQEATASRPDIAFAVGVCDRYQ
        MRDSPHI HNKSTSEEAWIKRMFIYRQDIEFLIVQI VDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQEATASRPDIAFAVGVCDRYQ
Subjt:  MRDSPHICHNKSTSEEAWIKRMFIYRQDIEFLIVQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQEATASRPDIAFAVGVCDRYQ

Query:  ADPCSSHLYSAKHILKYITGYCDADWDGCSDDQKSTSGGCFFWGTT
        ADPCSSHLYSAKHILKYITGYCDADWDGCSDDQKSTSGGCFFWGTT
Subjt:  ADPCSSHLYSAKHILKYITGYCDADWDGCSDDQKSTSGGCFFWGTT

A0A5A7UJW3 Putative mitochondrial protein1.3e-3150Show/hide
Query:  VQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQ---------------------------------------------------EA
        VQI VDDIIFGGTSS YVE+FV QMKGEFE+SMVGELTFFLGFQI+Q                                                     
Subjt:  VQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQ---------------------------------------------------EA

Query:  TASRPDIAFAVGVCDRYQADPCSSHLYSAKHILKYI------------------TGYCDADWDGCSDDQKSTSGGCFF
        TASRPDIAF VGVC RYQAD  +SHL+SAK ILKYI                   GYCDADW  CSDD+KSTS GCFF
Subjt:  TASRPDIAFAVGVCDRYQADPCSSHLYSAKHILKYI------------------TGYCDADWDGCSDDQKSTSGGCFF

A0A5A7V603 Gag-pol polyprotein1.9e-3560.53Show/hide
Query:  MFIYRQDIEFLIVQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQE-----------------------------ATASRPDIAFA
        MFIYRQ  EFLIVQI VDDIIFGGTSS YV++FV QMK EFEMSMVGEL+FFLGFQI+QE                              TASRPDIAFA
Subjt:  MFIYRQDIEFLIVQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQE-----------------------------ATASRPDIAFA

Query:  VGVCDRYQADPCSSHLYSAKHILKYITGYCDADWDGCSDDQKSTSGGCFFWG
        VG+  RYQ DP +SHL+SAK I KYI+G       GCSDD KSTS GCFF G
Subjt:  VGVCDRYQADPCSSHLYSAKHILKYITGYCDADWDGCSDDQKSTSGGCFFWG

A0A5D3CKQ9 Putative gag-pol polyprotein8.1e-3148.75Show/hide
Query:  KRMFIYRQDIEFLIVQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQEA-----------------TASRPDIAFAVGVCDRYQAD
        K +FI R     ++ QI VDDIIFGG S   V  F+  MK EFEMS+VGEL+ FLG QI+Q++                 TASRPDIA+AVG+C RYQ++
Subjt:  KRMFIYRQDIEFLIVQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQEA-----------------TASRPDIAFAVGVCDRYQAD

Query:  PCSSHLYSAKHILKYI------------------TGYCDADWDGCSDDQKSTSGGCFFWG
        P  SHL + K I+KY+                   GYCDADW G +DDQKSTSGGCFF G
Subjt:  PCSSHLYSAKHILKYI------------------TGYCDADWDGCSDDQKSTSGGCFFWG

A0A5D3CWQ1 Gag-pol polyprotein1.9e-3560.53Show/hide
Query:  MFIYRQDIEFLIVQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQEAT-----------------------------ASRPDIAFA
        MFIYRQ  EFLIVQI VDDIIFGGTSS YV++FV QMK EFEMSMVGEL+FFLGFQI+QE T                             ASRPDIAFA
Subjt:  MFIYRQDIEFLIVQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQEAT-----------------------------ASRPDIAFA

Query:  VGVCDRYQADPCSSHLYSAKHILKYITGYCDADWDGCSDDQKSTSGGCFFWG
        VG+  RYQ DP +SHL+SAK I KYI+G       GCSDD KSTS GCFF G
Subjt:  VGVCDRYQADPCSSHLYSAKHILKYITGYCDADWDGCSDDQKSTSGGCFFWG

SwissProt top hitse value%identityAlignment
P0CV72 Secreted RxLR effector protein 1612.7e-0730.63Show/hide
Query:  MKGEFEMSMVGELTFFLGFQIRQEATASRPDIAFAVGVCDRYQADPCSSHLYSAKHILKY------------------ITGYCDADWDGCSDDQKSTS--
        MK    +S VG + + +          +RPD+A AVGV  ++ +DPC +H  + K +L+Y                  + GY DADW G  + ++STS  
Subjt:  MKGEFEMSMVGELTFFLGFQIRQEATASRPDIAFAVGVCDRYQADPCSSHLYSAKHILKY------------------ITGYCDADWDGCSDDQKSTS--

Query:  -----GGCFFW
             GGC  W
Subjt:  -----GGCFFW

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-948.1e-0436.49Show/hide
Query:  SRPDIAFAVGVCDRYQADPCSSHLYSAKHILKY-----------------ITGYCDADWDGCSDDQKSTSGGCF
        +RPDIA AVGV  R+  +P   H  + K IL+Y                 + GY DAD  G  D++KS++G  F
Subjt:  SRPDIAFAVGVCDRYQADPCSSHLYSAKHILKY-----------------ITGYCDADWDGCSDDQKSTSGGCF

P92519 Uncharacterized mitochondrial protein AtMg008101.9e-0530.12Show/hide
Query:  QEATASRPDIAFAVGVCDRYQADPCSSHLYSAKHILKYITG------------------YCDADWDGCSDDQKSTSGGCFFWG
        Q  T +RPDI++AV +  +   +P  +     K +L+Y+ G                  +CD+DW GC+  ++ST+G C F G
Subjt:  QEATASRPDIAFAVGVCDRYQADPCSSHLYSAKHILKYITG------------------YCDADWDGCSDDQKSTSGGCFFWG

Arabidopsis top hitse value%identityAlignment
ATMG00810.1 DNA/RNA polymerases superfamily protein1.4e-0630.12Show/hide
Query:  QEATASRPDIAFAVGVCDRYQADPCSSHLYSAKHILKYITG------------------YCDADWDGCSDDQKSTSGGCFFWG
        Q  T +RPDI++AV +  +   +P  +     K +L+Y+ G                  +CD+DW GC+  ++ST+G C F G
Subjt:  QEATASRPDIAFAVGVCDRYQADPCSSHLYSAKHILKYITG------------------YCDADWDGCSDDQKSTSGGCFFWG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGACTCTCCACATATCTGTCACAACAAGAGTACCAGCGAGGAGGCGTGGATCAAACGAATGTTCATTTATCGACAAGACATTGAGTTCCTGATTGTTCAA
ATTGACGTGGATGACATTATATTTGGCGGAACATCTTCAGATTATGTTGAAAAGTTTGTATGCCAGATGAAGGGAGAATTTGAAATGAGCATGGTTGGTGAGCTA
ACCTTCTTTCTGGGATTTCAAATCCGCCAAGAAGCAACAGCTAGCAGACCAGACATTGCCTTTGCAGTAGGCGTATGTGATCGCTACCAGGCTGACCCTTGCTCG
TCTCATCTTTACAGCGCTAAACACATACTGAAATACATAACAGGGTACTGTGATGCAGATTGGGATGGATGCTCCGATGATCAAAAGAGCACATCTGGAGGCTGT
TTTTTCTGGGGAACAACATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGACTCTCCACATATCTGTCACAACAAGAGTACCAGCGAGGAGGCGTGGATCAAACGAATGTTCATTTATCGACAAGACATTGAGTTCCTGATTGTTCAA
ATTGACGTGGATGACATTATATTTGGCGGAACATCTTCAGATTATGTTGAAAAGTTTGTATGCCAGATGAAGGGAGAATTTGAAATGAGCATGGTTGGTGAGCTA
ACCTTCTTTCTGGGATTTCAAATCCGCCAAGAAGCAACAGCTAGCAGACCAGACATTGCCTTTGCAGTAGGCGTATGTGATCGCTACCAGGCTGACCCTTGCTCG
TCTCATCTTTACAGCGCTAAACACATACTGAAATACATAACAGGGTACTGTGATGCAGATTGGGATGGATGCTCCGATGATCAAAAGAGCACATCTGGAGGCTGT
TTTTTCTGGGGAACAACATAG
Protein sequenceShow/hide protein sequence
MRDSPHICHNKSTSEEAWIKRMFIYRQDIEFLIVQIDVDDIIFGGTSSDYVEKFVCQMKGEFEMSMVGELTFFLGFQIRQEATASRPDIAFAVGVCDRYQADPCS
SHLYSAKHILKYITGYCDADWDGCSDDQKSTSGGCFFWGTT