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Pay0003338 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0003338
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGag-pol polyprotein
Genome locationchr06:23672490..23674464
RNA-Seq ExpressionPay0003338
SyntenyPay0003338
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038419.1 gag-pol polyprotein [Cucumis melo var. makuwa]6.3e-6467.82Show/hide
Query:  MEIIR-GPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCS
        MEIIR GPS SRPPV D KNY Y K  MI F+KTLD +  RV+VAG++PPM+T+DG  VPK +VDWTD EEQASV N+ AIN IFNG+DLNVFKLINSC+
Subjt:  MEIIR-GPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCS

Query:  SVKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPDDDDELAPKVTMVPEVAVVDALI
        + K+AWKILEVAYEGT KV+ISRLQLITSKFEAL+M ED+SV+E NERVLEIA++S  LGEKISESKIV K+LRSLP    +L  KV  + E   +  L 
Subjt:  SVKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPDDDDELAPKVTMVPEVAVVDALI

Query:  AD
         D
Subjt:  AD

KAA0056213.1 putative mitochondrial protein [Cucumis melo var. makuwa]6.3e-6468.32Show/hide
Query:  MEIIR-GPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCS
        MEIIR GPS SRPPVLD KNYSY K  MI F+KTLDG+  R +VAG+DPPMIT +G  VPK EVDWTD EEQASV N+ A N IFNGVDLN+FKLINSCS
Subjt:  MEIIR-GPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCS

Query:  SVKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPDDDDELAPKVTMVPEVAVVDALI
        + K+AWK LEVAYEGT KV+ISRLQLITSKFEAL+M ED+SV + N+RVLEIA+ES  LGEKI +SKIV K+LRSLP   D    KVT + E   +  L 
Subjt:  SVKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPDDDDELAPKVTMVPEVAVVDALI

Query:  AD
         D
Subjt:  AD

KAA0060370.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.6e-10263.93Show/hide
Query:  MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS
        MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS
Subjt:  MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS

Query:  VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPD-----------------------
        VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPD                       
Subjt:  VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPD-----------------------

Query:  ---------------------------------------------------------------------------------------------DDDELAP
                                                                                                     DDDELAP
Subjt:  ---------------------------------------------------------------------------------------------DDDELAP

Query:  KVTMVPEVAVVDALIADTTVNCFGDDSKSTQKEVTAEESEL
        KVTMVPEVAVVDALIADTTVNCFGDDSKSTQKE+  + + L
Subjt:  KVTMVPEVAVVDALIADTTVNCFGDDSKSTQKEVTAEESEL

TYK22111.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.6e-10263.93Show/hide
Query:  MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS
        MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS
Subjt:  MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS

Query:  VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPD-----------------------
        VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPD                       
Subjt:  VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPD-----------------------

Query:  ---------------------------------------------------------------------------------------------DDDELAP
                                                                                                     DDDELAP
Subjt:  ---------------------------------------------------------------------------------------------DDDELAP

Query:  KVTMVPEVAVVDALIADTTVNCFGDDSKSTQKEVTAEESEL
        KVTMVPEVAVVDALIADTTVNCFGDDSKSTQKE+  + + L
Subjt:  KVTMVPEVAVVDALIADTTVNCFGDDSKSTQKEVTAEESEL

XP_016900834.1 PREDICTED: uncharacterized protein LOC107991049 [Cucumis melo]1.8e-124100Show/hide
Query:  MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS
        MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS
Subjt:  MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS

Query:  VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPDDDDELAPKVTMVPEVAVVDALIA
        VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPDDDDELAPKVTMVPEVAVVDALIA
Subjt:  VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPDDDDELAPKVTMVPEVAVVDALIA

Query:  DTTVNCFGDDSKSTQKEVTAEESELIPSSHV
        DTTVNCFGDDSKSTQKEVTAEESELIPSSHV
Subjt:  DTTVNCFGDDSKSTQKEVTAEESELIPSSHV

TrEMBL top hitse value%identityAlignment
A0A1S4DXW9 uncharacterized protein LOC1079910499.0e-125100Show/hide
Query:  MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS
        MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS
Subjt:  MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS

Query:  VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPDDDDELAPKVTMVPEVAVVDALIA
        VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPDDDDELAPKVTMVPEVAVVDALIA
Subjt:  VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPDDDDELAPKVTMVPEVAVVDALIA

Query:  DTTVNCFGDDSKSTQKEVTAEESELIPSSHV
        DTTVNCFGDDSKSTQKEVTAEESELIPSSHV
Subjt:  DTTVNCFGDDSKSTQKEVTAEESELIPSSHV

A0A5A7TAN7 Gag-pol polyprotein3.0e-6467.82Show/hide
Query:  MEIIR-GPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCS
        MEIIR GPS SRPPV D KNY Y K  MI F+KTLD +  RV+VAG++PPM+T+DG  VPK +VDWTD EEQASV N+ AIN IFNG+DLNVFKLINSC+
Subjt:  MEIIR-GPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCS

Query:  SVKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPDDDDELAPKVTMVPEVAVVDALI
        + K+AWKILEVAYEGT KV+ISRLQLITSKFEAL+M ED+SV+E NERVLEIA++S  LGEKISESKIV K+LRSLP    +L  KV  + E   +  L 
Subjt:  SVKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPDDDDELAPKVTMVPEVAVVDALI

Query:  AD
         D
Subjt:  AD

A0A5A7UJR8 Putative mitochondrial protein3.0e-6468.32Show/hide
Query:  MEIIR-GPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCS
        MEIIR GPS SRPPVLD KNYSY K  MI F+KTLDG+  R +VAG+DPPMIT +G  VPK EVDWTD EEQASV N+ A N IFNGVDLN+FKLINSCS
Subjt:  MEIIR-GPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCS

Query:  SVKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPDDDDELAPKVTMVPEVAVVDALI
        + K+AWK LEVAYEGT KV+ISRLQLITSKFEAL+M ED+SV + N+RVLEIA+ES  LGEKI +SKIV K+LRSLP   D    KVT + E   +  L 
Subjt:  SVKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPDDDDELAPKVTMVPEVAVVDALI

Query:  AD
         D
Subjt:  AD

A0A5A7UZ37 Gag-pol polyprotein1.3e-10263.93Show/hide
Query:  MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS
        MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS
Subjt:  MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS

Query:  VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPD-----------------------
        VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPD                       
Subjt:  VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPD-----------------------

Query:  ---------------------------------------------------------------------------------------------DDDELAP
                                                                                                     DDDELAP
Subjt:  ---------------------------------------------------------------------------------------------DDDELAP

Query:  KVTMVPEVAVVDALIADTTVNCFGDDSKSTQKEVTAEESEL
        KVTMVPEVAVVDALIADTTVNCFGDDSKSTQKE+  + + L
Subjt:  KVTMVPEVAVVDALIADTTVNCFGDDSKSTQKEVTAEESEL

A0A5D3DEK1 Gag-pol polyprotein1.3e-10263.93Show/hide
Query:  MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS
        MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS
Subjt:  MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSS

Query:  VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPD-----------------------
        VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPD                       
Subjt:  VKKAWKILEVAYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPD-----------------------

Query:  ---------------------------------------------------------------------------------------------DDDELAP
                                                                                                     DDDELAP
Subjt:  ---------------------------------------------------------------------------------------------DDDELAP

Query:  KVTMVPEVAVVDALIADTTVNCFGDDSKSTQKEVTAEESEL
        KVTMVPEVAVVDALIADTTVNCFGDDSKSTQKE+  + + L
Subjt:  KVTMVPEVAVVDALIADTTVNCFGDDSKSTQKEVTAEESEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATAATCAGAGGTCCATCAATCTCTCGTCCTCCTGTACTTGATGACAAAAATTATTCATATGGGAAGGCCCACATGATATCATTTCTAAAAACTCTTGATGGAAG
GACTTGTAGAGTTGTTGTAGCTGGATGGGACCCACCAATGATCACTATAGATGGTCATTGTGTTCCTAAATCTGAAGTTGATTGGACTGATGTTGAAGAACAAGCCTCTG
TGAGAAATTCTACAGCCATTAATACTATCTTTAATGGTGTTGACTTGAATGTGTTTAAATTGATTAACTCTTGTAGCTCTGTAAAGAAAGCTTGGAAAATATTGGAGGTT
GCATATGAAGGCACTAAAAAAGTTGAAATATCCAGATTACAGTTGATAACCTCAAAATTTGAAGCTTTAAAAATGTTTGAGGATCAGTCTGTAGCTGAATGTAATGAAAG
AGTTCTAGAAATAGCCGATGAATCATTCAACCTTGGAGAAAAGATTTCTGAATCCAAGATAGTGGGAAAACTACTGCGTTCTCTGCCTGATGATGATGATGAACTAGCAC
CTAAAGTTACCATGGTACCTGAAGTAGCTGTTGTTGATGCTCTTATAGCTGATACAACTGTAAATTGCTTTGGAGATGACTCAAAATCAACTCAGAAGGAAGTAACAGCT
GAGGAAAGTGAACTTATTCCATCTTCACATGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATAATCAGAGGTCCATCAATCTCTCGTCCTCCTGTACTTGATGACAAAAATTATTCATATGGGAAGGCCCACATGATATCATTTCTAAAAACTCTTGATGGAAG
GACTTGTAGAGTTGTTGTAGCTGGATGGGACCCACCAATGATCACTATAGATGGTCATTGTGTTCCTAAATCTGAAGTTGATTGGACTGATGTTGAAGAACAAGCCTCTG
TGAGAAATTCTACAGCCATTAATACTATCTTTAATGGTGTTGACTTGAATGTGTTTAAATTGATTAACTCTTGTAGCTCTGTAAAGAAAGCTTGGAAAATATTGGAGGTT
GCATATGAAGGCACTAAAAAAGTTGAAATATCCAGATTACAGTTGATAACCTCAAAATTTGAAGCTTTAAAAATGTTTGAGGATCAGTCTGTAGCTGAATGTAATGAAAG
AGTTCTAGAAATAGCCGATGAATCATTCAACCTTGGAGAAAAGATTTCTGAATCCAAGATAGTGGGAAAACTACTGCGTTCTCTGCCTGATGATGATGATGAACTAGCAC
CTAAAGTTACCATGGTACCTGAAGTAGCTGTTGTTGATGCTCTTATAGCTGATACAACTGTAAATTGCTTTGGAGATGACTCAAAATCAACTCAGAAGGAAGTAACAGCT
GAGGAAAGTGAACTTATTCCATCTTCACATGTCTGA
Protein sequenceShow/hide protein sequence
MEIIRGPSISRPPVLDDKNYSYGKAHMISFLKTLDGRTCRVVVAGWDPPMITIDGHCVPKSEVDWTDVEEQASVRNSTAINTIFNGVDLNVFKLINSCSSVKKAWKILEV
AYEGTKKVEISRLQLITSKFEALKMFEDQSVAECNERVLEIADESFNLGEKISESKIVGKLLRSLPDDDDELAPKVTMVPEVAVVDALIADTTVNCFGDDSKSTQKEVTA
EESELIPSSHV