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Pay0003548 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0003548
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGag/pol protein
Genome locationchr09:10900114..10902092
RNA-Seq ExpressionPay0003548
SyntenyPay0003548
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026233.1 gag/pol protein [Cucumis melo var. makuwa]2.5e-2982.56Show/hide
Query:  YPKGIISGYFYDHKDNKVFVLTNATFLEESHIREHKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR
        YPKG   GYFYD KDNKVFV TNATFLEE HIREHKP SKIVL+ LS ETTEPSTRVVEEPSALIRVVHV SSTR HQ Q LR+PR
Subjt:  YPKGIISGYFYDHKDNKVFVLTNATFLEESHIREHKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR

KAA0026233.1 gag/pol protein [Cucumis melo var. makuwa]8.7e-2264.36Show/hide
Query:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEASYPKGIISGY---FYDHKDNKV---FVLTNATFLE
        MLTAREIMDS QEMFGQ SYQIKHDALKYIYNARMNE AS+REHVLNM+ H NV  MNEAVIDEAS    I+      F   + N V      T  T L 
Subjt:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEASYPKGIISGY---FYDHKDNKV---FVLTNATFLE

Query:  E
        E
Subjt:  E

KAA0026233.1 gag/pol protein [Cucumis melo var. makuwa]7.3e-2981.4Show/hide
Query:  YPKGIISGYFYDHKDNKVFVLTNATFLEESHIREHKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR
        YPKG   GYFYD KDNKVFV TNATFLEE HIREHKP SKIVL+ LS ETTEPSTRVVEEPSAL RVVHV SSTR HQ Q LR+PR
Subjt:  YPKGIISGYFYDHKDNKVFVLTNATFLEESHIREHKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR

KAA0058181.1 gag/pol protein [Cucumis melo var. makuwa]6.4e-3332.64Show/hide
Query:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEA-----------------------------------
        MLTAREIMDS QEMFGQ SYQIKHDALKYIYNARMNE AS+REHVLNM+ H NV EMN AVIDEA                                   
Subjt:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEA-----------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------------------------------------------------SYPK
                                                                                                         YPK
Subjt:  ------------------------------------------------------------------------------------------------SYPK

Query:  GIISGYFYDHKDNKVFVLTNATFLEESHIREHKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR
        G   GYFYD KDNKVFV TNATFLEE HIREHKP SKIVL+ LSNETTEPSTRVVEEPSAL RV HV SSTR HQ Q LR+P+
Subjt:  GIISGYFYDHKDNKVFVLTNATFLEESHIREHKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]7.8e-3937.99Show/hide
Query:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEAS----------------------------------
        MLTAREIMDS QEMFGQ SYQIKHDALKYIYNARMNE AS+REHVLN++ H NV EMN AVIDEAS                                  
Subjt:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEAS----------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------------------YPKGIISGYFYDHKDNKVFVLTNATFLEESHIREHKPLSKIVLDGLSNETTEPSTRV
                                                   YPKG   GYFYD KDNKVFV TNATFLEE HIREHKP SKIVL+ LS ETT+PSTRV
Subjt:  -------------------------------------------YPKGIISGYFYDHKDNKVFVLTNATFLEESHIREHKPLSKIVLDGLSNETTEPSTRV

Query:  VEEPSALIRVVHVSSSTRAHQSQLLRKPR
        VEEPSAL RVVHV SSTR HQ Q LR+PR
Subjt:  VEEPSALIRVVHVSSSTRAHQSQLLRKPR

TYJ97618.1 gag/pol protein [Cucumis melo var. makuwa]5.6e-2184.85Show/hide
Query:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEAS
        MLTAREIMDS QEMFGQ SYQI HDALKYIYNARMNE AS+REHVLNM+ H NV EMN AVIDEAS
Subjt:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEAS

XP_008465841.1 PREDICTED: uncharacterized protein LOC103503436 [Cucumis melo]2.5e-77100Show/hide
Query:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEASYPKGIISGYFYDHKDNKVFVLTNATFLEESHIRE
        MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEASYPKGIISGYFYDHKDNKVFVLTNATFLEESHIRE
Subjt:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEASYPKGIISGYFYDHKDNKVFVLTNATFLEESHIRE

Query:  HKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR
        HKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR
Subjt:  HKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR

TrEMBL top hitse value%identityAlignment
A0A1S3CQ62 uncharacterized protein LOC1035034361.2e-77100Show/hide
Query:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEASYPKGIISGYFYDHKDNKVFVLTNATFLEESHIRE
        MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEASYPKGIISGYFYDHKDNKVFVLTNATFLEESHIRE
Subjt:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEASYPKGIISGYFYDHKDNKVFVLTNATFLEESHIRE

Query:  HKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR
        HKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR
Subjt:  HKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR

A0A5A7SMH8 Gag/pol protein4.2e-2264.36Show/hide
Query:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEASYPKGIISGY---FYDHKDNKV---FVLTNATFLE
        MLTAREIMDS QEMFGQ SYQIKHDALKYIYNARMNE AS+REHVLNM+ H NV EMN AVIDEAS    I+      F   + N V      T  T L 
Subjt:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEASYPKGIISGY---FYDHKDNKV---FVLTNATFLE

Query:  E
        E
Subjt:  E

A0A5A7SNP8 Gag/pol protein1.2e-2982.56Show/hide
Query:  YPKGIISGYFYDHKDNKVFVLTNATFLEESHIREHKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR
        YPKG   GYFYD KDNKVFV TNATFLEE HIREHKP SKIVL+ LS ETTEPSTRVVEEPSALIRVVHV SSTR HQ Q LR+PR
Subjt:  YPKGIISGYFYDHKDNKVFVLTNATFLEESHIREHKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR

A0A5A7SNP8 Gag/pol protein4.2e-2264.36Show/hide
Query:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEASYPKGIISGY---FYDHKDNKV---FVLTNATFLE
        MLTAREIMDS QEMFGQ SYQIKHDALKYIYNARMNE AS+REHVLNM+ H NV  MNEAVIDEAS    I+      F   + N V      T  T L 
Subjt:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEASYPKGIISGY---FYDHKDNKV---FVLTNATFLE

Query:  E
        E
Subjt:  E

A0A5A7SNP8 Gag/pol protein3.6e-2981.4Show/hide
Query:  YPKGIISGYFYDHKDNKVFVLTNATFLEESHIREHKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR
        YPKG   GYFYD KDNKVFV TNATFLEE HIREHKP SKIVL+ LS ETTEPSTRVVEEPSAL RVVHV SSTR HQ Q LR+PR
Subjt:  YPKGIISGYFYDHKDNKVFVLTNATFLEESHIREHKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR

A0A5A7UXG8 Gag/pol protein3.1e-3332.64Show/hide
Query:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEA-----------------------------------
        MLTAREIMDS QEMFGQ SYQIKHDALKYIYNARMNE AS+REHVLNM+ H NV EMN AVIDEA                                   
Subjt:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEA-----------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------------------------------------------------SYPK
                                                                                                         YPK
Subjt:  ------------------------------------------------------------------------------------------------SYPK

Query:  GIISGYFYDHKDNKVFVLTNATFLEESHIREHKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR
        G   GYFYD KDNKVFV TNATFLEE HIREHKP SKIVL+ LSNETTEPSTRVVEEPSAL RV HV SSTR HQ Q LR+P+
Subjt:  GIISGYFYDHKDNKVFVLTNATFLEESHIREHKPLSKIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR

A0A5A7V6N0 Gag/pol protein3.8e-3937.99Show/hide
Query:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEAS----------------------------------
        MLTAREIMDS QEMFGQ SYQIKHDALKYIYNARMNE AS+REHVLN++ H NV EMN AVIDEAS                                  
Subjt:  MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEAS----------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------------------YPKGIISGYFYDHKDNKVFVLTNATFLEESHIREHKPLSKIVLDGLSNETTEPSTRV
                                                   YPKG   GYFYD KDNKVFV TNATFLEE HIREHKP SKIVL+ LS ETT+PSTRV
Subjt:  -------------------------------------------YPKGIISGYFYDHKDNKVFVLTNATFLEESHIREHKPLSKIVLDGLSNETTEPSTRV

Query:  VEEPSALIRVVHVSSSTRAHQSQLLRKPR
        VEEPSAL RVVHV SSTR HQ Q LR+PR
Subjt:  VEEPSALIRVVHVSSSTRAHQSQLLRKPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCACTGCTCGTGAGATTATGGACTCCTTCCAAGAGATGTTTGGTCAGACCTCTTATCAGATCAAGCACGATGCTCTAAAATACATTTATAATGCCCGTATG
AACGAAAGAGCCTCAATGCGAGAACATGTTCTTAATATGATTTTTCATTTAAATGTCGTAGAAATGAATGAAGCTGTCATCGATGAAGCCAGCTACCCCAAAGGA
ATCATAAGTGGTTACTTCTATGATCATAAAGATAATAAAGTATTTGTATTGACAAATGCTACATTTTTAGAAGAGAGCCACATAAGGGAGCACAAACCGCTTAGT
AAGATAGTATTAGATGGACTTTCCAATGAAACTACTGAACCTTCAACAAGAGTTGTTGAAGAACCTAGTGCATTAATAAGAGTTGTTCATGTCAGTTCATCTACT
AGGGCACATCAATCTCAATTGTTGAGGAAACCTCGATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCACTGCTCGTGAGATTATGGACTCCTTCCAAGAGATGTTTGGTCAGACCTCTTATCAGATCAAGCACGATGCTCTAAAATACATTTATAATGCCCGTATG
AACGAAAGAGCCTCAATGCGAGAACATGTTCTTAATATGATTTTTCATTTAAATGTCGTAGAAATGAATGAAGCTGTCATCGATGAAGCCAGCTACCCCAAAGGA
ATCATAAGTGGTTACTTCTATGATCATAAAGATAATAAAGTATTTGTATTGACAAATGCTACATTTTTAGAAGAGAGCCACATAAGGGAGCACAAACCGCTTAGT
AAGATAGTATTAGATGGACTTTCCAATGAAACTACTGAACCTTCAACAAGAGTTGTTGAAGAACCTAGTGCATTAATAAGAGTTGTTCATGTCAGTTCATCTACT
AGGGCACATCAATCTCAATTGTTGAGGAAACCTCGATAA
Protein sequenceShow/hide protein sequence
MLTAREIMDSFQEMFGQTSYQIKHDALKYIYNARMNERASMREHVLNMIFHLNVVEMNEAVIDEASYPKGIISGYFYDHKDNKVFVLTNATFLEESHIREHKPLS
KIVLDGLSNETTEPSTRVVEEPSALIRVVHVSSSTRAHQSQLLRKPR