CuGenDBv2

Gene ID	Pay0003642
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr09:6362628..6364320
RNA-Seq Expression	Pay0003642
Synteny	Pay0003642
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026100.1 uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]

4.1e-96

63.25

Show/hide

Query:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF
        +N  FE+WVTTDLLL GWLYNSM  +VAIQLMGFTN +DLW+ATQD FGVQSRAEEDFLRQ  QTT KGN+KME+YL++MKTN D LGQ   SPVP+RA 
Subjt:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF

Query:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQKNTE---NIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGR
        ISQ LLGLDEVYN VI V QGKP+ISW+DMQS+LL FEK L+HQ+TQK  +   NI Q+  +N+AQ   ++  R +SN +F+G NR +  GQRG  N   
Subjt:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQKNTE---NIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGR

Query:  GRGKGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEY
               N PTCQ+C KYG+SALVCYNRFN EF SPLVQDR   SSN S   N  V V+ Q+   FAT DTV++ NWYIDSGATNH+T E S+++NP+EY
Subjt:  GRGKGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEY

Query:  SG
        SG
Subjt:  SG

TYK05754.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.3e-223

94.94

Show/hide

Query:  VAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAFISQALLGLDEVYNPVIAVTQGKPEIS
        +AIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQ FQTT K  +  EDYL IMKTN+DKLGQA  SPVPKRAFISQALLGLDEVYNPVIAV QGKPEIS
Subjt:  VAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAFISQALLGLDEVYNPVIAVTQGKPEIS

Query:  WIDMQSELLTFEKRLEHQDTQKNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGRGRGKGRGNKPTCQVCEKYGNSALVCYNRF
        WIDMQSELLTFEKRLEHQDTQKNTENIIQN VVNIAQNRN SDFRKYSNHQFHGNNRNNS+GQRGGFNIGRGRGKGRGNKPTCQVCEKYG+SALVCYNRF
Subjt:  WIDMQSELLTFEKRLEHQDTQKNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGRGRGKGRGNKPTCQVCEKYGNSALVCYNRF

Query:  NNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEYSGIEKIMVGNGDSLHISYIGNAYLTDGIN
        N EFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYS+LSNPSEYSGIEKIMVGNGDSLHISYIGNAYLTDGIN
Subjt:  NNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEYSGIEKIMVGNGDSLHISYIGNAYLTDGIN

Query:  GLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGRTLLNRTIKDELYHLDTIRKEKRAEDLDCCGRRNSQCTKIKVHLHLCCHEEQIL
        GLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGRTLLNRTIKD LYHLDTIRKEKRAEDLDCCGRRNSQCTKIKVHLHLCCHE+QIL
Subjt:  GLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGRTLLNRTIKDELYHLDTIRKEKRAEDLDCCGRRNSQCTKIKVHLHLCCHEEQIL

Query:  PILVWRCLRLFGTNV
        PILVWRCLRLFGTNV
Subjt:  PILVWRCLRLFGTNV

XP_016902197.1 PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]

4.5e-111

59.09

Show/hide

Query:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF
        +NP FE+WVTTDLLL GWLYNSM  +VAIQLMGFTN +DLW+ATQD FGVQSRAEEDFLRQ  QTT K                                
Subjt:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF

Query:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQ-KNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGRGR
              GLDEVYN VI V QGKP+ISW+DMQS+LL FEKRL+HQ+TQ KNT NI Q+  +N+AQ   ++  R  SN +F+G NR +  GQRG  N     
Subjt:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQ-KNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGRGR

Query:  GKGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEYSG
             N PTCQ+C KYG+SALVCYNRFN EF SPLVQ+R   SSN S   N  V V+ Q+   FAT DTV++ NWYIDSGATNH+T E S+++NP+EYSG
Subjt:  GKGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEYSG

Query:  IEKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGR
        IEK+ VGNG+ L+ISY+GN  LTDG   L LKN+LCVPDI KNL+SVSKLAQDN++YIEFHG  CFIKDK TG+
Subjt:  IEKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGR

XP_016902203.1 PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]

8.5e-78

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Query:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF
        +NP FE+WVTTDLLL GWLYNSM  +VAIQLMGFTN +DLW+ATQD FGVQSRAEEDFLRQ  QTT K                                
Subjt:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF

Query:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQ-KNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGRGR
              GLDEVYN VI V QGKP+ISW+DMQS+LL FEKRL+HQ+TQ KNT NI Q+  +N+AQ   ++  R  SN +F+G NR +  GQRG  N     
Subjt:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQ-KNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGRGR

Query:  GKGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEYSG
             N PTCQ+C KYG+SALVCYNRFN EF SPLVQ+R   SSN S   N  V V+ Q+   FAT DTV++ NWYIDSGATNH+T E S+++NP+EYSG
Subjt:  GKGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEYSG

XP_016902204.1 PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo]

4.1e-80

48.66

Show/hide

Query:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF
        +NP FE+WVTTDLLL GWLYNSM  +VAIQLMGFTN +DLW+ATQD FGVQSRAEEDFLRQ  QTT K                                
Subjt:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF

Query:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQ-KNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGRGR
              GLDEVYN VI V QGKP+ISW+DMQS+LL FEKRL+HQ+TQ KNT NI Q+  +N+AQ   ++  R  SN +F+G NR +  GQRG  N     
Subjt:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQ-KNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGRGR

Query:  GKGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEYSG
             N PTCQ+C                                                                DSGATNH+T E S+++NP+EYSG
Subjt:  GKGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEYSG

Query:  IEKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGR
        IEK+ VGNG+ L+ISY+GN  LTDG   L LKN+LCVPDI KNL+SVSKLAQDN++YIEFHG  CFIKDK TG+
Subjt:  IEKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGR

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E1U6 uncharacterized protein LOC107991581 isoform X1

2.2e-111

59.09

Show/hide

Query:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF
        +NP FE+WVTTDLLL GWLYNSM  +VAIQLMGFTN +DLW+ATQD FGVQSRAEEDFLRQ  QTT K                                
Subjt:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF

Query:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQ-KNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGRGR
              GLDEVYN VI V QGKP+ISW+DMQS+LL FEKRL+HQ+TQ KNT NI Q+  +N+AQ   ++  R  SN +F+G NR +  GQRG  N     
Subjt:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQ-KNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGRGR

Query:  GKGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEYSG
             N PTCQ+C KYG+SALVCYNRFN EF SPLVQ+R   SSN S   N  V V+ Q+   FAT DTV++ NWYIDSGATNH+T E S+++NP+EYSG
Subjt:  GKGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEYSG

Query:  IEKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGR
        IEK+ VGNG+ L+ISY+GN  LTDG   L LKN+LCVPDI KNL+SVSKLAQDN++YIEFHG  CFIKDK TG+
Subjt:  IEKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGR

A0A1S4E1U9 uncharacterized protein LOC107991581 isoform X4

2.0e-80

48.66

Show/hide

Query:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF
        +NP FE+WVTTDLLL GWLYNSM  +VAIQLMGFTN +DLW+ATQD FGVQSRAEEDFLRQ  QTT K                                
Subjt:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF

Query:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQ-KNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGRGR
              GLDEVYN VI V QGKP+ISW+DMQS+LL FEKRL+HQ+TQ KNT NI Q+  +N+AQ   ++  R  SN +F+G NR +  GQRG  N     
Subjt:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQ-KNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGRGR

Query:  GKGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEYSG
             N PTCQ+C                                                                DSGATNH+T E S+++NP+EYSG
Subjt:  GKGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEYSG

Query:  IEKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGR
        IEK+ VGNG+ L+ISY+GN  LTDG   L LKN+LCVPDI KNL+SVSKLAQDN++YIEFHG  CFIKDK TG+
Subjt:  IEKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGR

A0A5A7SIT7 Uncharacterized protein

2.0e-96

63.25

Show/hide

Query:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF
        +N  FE+WVTTDLLL GWLYNSM  +VAIQLMGFTN +DLW+ATQD FGVQSRAEEDFLRQ  QTT KGN+KME+YL++MKTN D LGQ   SPVP+RA 
Subjt:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF

Query:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQKNTE---NIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGR
        ISQ LLGLDEVYN VI V QGKP+ISW+DMQS+LL FEK L+HQ+TQK  +   NI Q+  +N+AQ   ++  R +SN +F+G NR +  GQRG  N   
Subjt:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQKNTE---NIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGR

Query:  GRGKGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEY
               N PTCQ+C KYG+SALVCYNRFN EF SPLVQDR   SSN S   N  V V+ Q+   FAT DTV++ NWYIDSGATNH+T E S+++NP+EY
Subjt:  GRGKGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEY

Query:  SG
        SG
Subjt:  SG

A0A5A7UY76 Integrase, catalytic core

4.1e-78

46.25

Show/hide

Query:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF
        +NP+F++WVT+DLLL GW+YNSM  EVA QLMGF  AKDL EA QDLFGVQSR EEDFLR TFQTT KGNSKMEDYL IMKTNA+ LGQA  SP+P R+ 
Subjt:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF

Query:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQKNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGRGRG
        ISQ LLGLDEVYNP                              ++QKN  NI+QN  VN+ QNR  +D R+  N                         
Subjt:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQKNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGRGRG

Query:  KGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEYSGI
                           +V  +     F++  V    A+    ++H+            ++      + L   +DSGATNH+T +YS+LSNPSEYSGI
Subjt:  KGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEYSGI

Query:  EKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGRTLLNRTIKDELYHL
        E ++VGNG+ L IS  GN+ L+DG + + L+NVL VPDI KNL+SVSKL QDNNV +EF+G +CF+KDKDTG+T++   ++D LYHL
Subjt:  EKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGRTLLNRTIKDELYHL

A0A5D3C373 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.1e-223

94.94

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Query:  VAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAFISQALLGLDEVYNPVIAVTQGKPEIS
        +AIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQ FQTT K  +  EDYL IMKTN+DKLGQA  SPVPKRAFISQALLGLDEVYNPVIAV QGKPEIS
Subjt:  VAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAFISQALLGLDEVYNPVIAVTQGKPEIS

Query:  WIDMQSELLTFEKRLEHQDTQKNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGRGRGKGRGNKPTCQVCEKYGNSALVCYNRF
        WIDMQSELLTFEKRLEHQDTQKNTENIIQN VVNIAQNRN SDFRKYSNHQFHGNNRNNS+GQRGGFNIGRGRGKGRGNKPTCQVCEKYG+SALVCYNRF
Subjt:  WIDMQSELLTFEKRLEHQDTQKNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGRGRGKGRGNKPTCQVCEKYGNSALVCYNRF

Query:  NNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEYSGIEKIMVGNGDSLHISYIGNAYLTDGIN
        N EFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYS+LSNPSEYSGIEKIMVGNGDSLHISYIGNAYLTDGIN
Subjt:  NNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEYSGIEKIMVGNGDSLHISYIGNAYLTDGIN

Query:  GLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGRTLLNRTIKDELYHLDTIRKEKRAEDLDCCGRRNSQCTKIKVHLHLCCHEEQIL
        GLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGRTLLNRTIKD LYHLDTIRKEKRAEDLDCCGRRNSQCTKIKVHLHLCCHE+QIL
Subjt:  GLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGRTLLNRTIKDELYHLDTIRKEKRAEDLDCCGRRNSQCTKIKVHLHLCCHEEQIL

Query:  PILVWRCLRLFGTNV
        PILVWRCLRLFGTNV
Subjt:  PILVWRCLRLFGTNV

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

7.6e-29

26.97

Show/hide

Query:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF
        +NP++ +W   D L++  +  ++ + V   +   T A  +WE  + ++   S      LR   +  +KG   ++DY+  + T  D+L    + P+     
Subjt:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF

Query:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQ--KNTENIIQNVVVNIAQNRNISDFRKYSNHQFHG-----NNRNNSK-GQRGG
        + + L  L E Y PVI       +I+  D    L    +RL + +++    +   +  +  N   +RN +     +N   +      NN NNSK  Q+  
Subjt:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQ--KNTENIIQNVVVNIAQNRNISDFRKYSNHQFHG-----NNRNNSK-GQRGG

Query:  FNIGRGRGKGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLS
         N      + +     CQ+C   G+SA  C ++  +   S   Q   +  + +   +NL            A      + NW +DSGAT+H+T ++++LS
Subjt:  FNIGRGRGKGRGNKPTCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLS

Query:  NPSEYSGIEKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGRTLLNRTIKDELY
            Y+G + +MV +G ++ IS+ G+  L+     LNL N+L VP+I KNL+SV +L   N V +EF      +KD +TG  LL    KDELY
Subjt:  NPSEYSGIEKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGRTLLNRTIKDELY

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.9e-24

26.72

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Query:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF
        +NP++ +W   D L++  +  ++ + V   +   T A  +WE                LR+ +   S G+     ++    T  D+L    + P+     
Subjt:  MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAF

Query:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQ---KNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGN-NRNNSKGQRGGFNIG
        + + L  L + Y PVI       +I+  D    L    +RL +++++    N+  ++  +  N+  +RN +  R  +N   + N N NN++      +  
Subjt:  ISQALLGLDEVYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQ---KNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGN-NRNNSKGQRGGFNIG

Query:  RGRGKGRGNKP---TCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQS-SNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLS
          R   R  KP    CQ+C   G+SA  C     ++F S   Q +     + +   +NL       +VN    A+     NW +DSGAT+H+T ++++LS
Subjt:  RGRGKGRGNKP---TCQVCEKYGNSALVCYNRFNNEFLSPLVQDRGAQS-SNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLS

Query:  NPSEYSGIEKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGRTLLNRTIKDELY
            Y+G + +M+ +G ++ I++ G+A L      L+L  VL VP+I KNL+SV +L   N V +EF      +KD +TG  LL    KDELY
Subjt:  NPSEYSGIEKIMVGNGDSLHISYIGNAYLTDGINGLNLKNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGRTLLNRTIKDELY

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAATCCTGAATTTGAAAAATGGGTAACTACTGATTTACTTTTGTTTGGTTGGTTATATAACTCGATGATGCTTGAAGTAGCCATTCAGTTGATGGGATTCACAAATGC
CAAAGACCTATGGGAAGCTACGCAGGATCTTTTTGGTGTTCAATCCAGAGCTGAAGAGGATTTCCTTCGCCAGACGTTCCAAACTACCAGCAAAGGTAATTCCAAAATGG
AAGACTATCTAATAATTATGAAAACTAATGCTGATAAACTTGGCCAAGCAAGAAGAAGTCCTGTTCCGAAACGTGCCTTTATTTCTCAGGCTCTACTAGGATTGGATGAA
GTCTACAATCCCGTCATAGCTGTTACTCAAGGGAAGCCAGAGATTTCGTGGATTGATATGCAGTCAGAGCTTCTTACATTTGAGAAGAGGTTGGAGCATCAAGATACGCA
GAAGAACACCGAAAATATCATCCAAAATGTTGTTGTAAACATAGCACAAAATCGAAACATCAGTGATTTTAGAAAATATAGCAACCATCAATTTCATGGTAATAATAGAA
ACAATTCTAAAGGGCAACGGGGTGGTTTTAACATTGGTCGAGGACGTGGTAAGGGTCGTGGCAACAAGCCAACTTGTCAGGTATGTGAAAAATATGGTAATTCTGCTCTT
GTTTGTTATAATAGGTTCAATAATGAGTTCTTAAGTCCCCTTGTACAAGACCGTGGAGCACAATCATCAAACTTCTCAAAACATTCAAATCTTACAGTCCTTGTTACTGG
GCAGAGTGTGAATCAATTTGCTACAGCAGATACCGTTATAAACCTGAATTGGTATATTGACAGTGGAGCAACGAACCACTTAACTGTCGAATACTCAGACCTGTCGAATC
CATCAGAATACTCAGGTATTGAAAAGATCATGGTTGGAAATGGAGACAGTTTACATATTTCCTATATTGGCAATGCCTATCTTACTGATGGAATAAATGGTTTAAATCTG
AAAAATGTTTTGTGTGTGCCTGATATCACCAAAAACCTTGTGAGTGTTTCCAAACTTGCACAAGATAATAATGTCTATATTGAGTTTCATGGGTGTTATTGTTTTATTAA
GGACAAAGACACAGGACGAACTCTGCTGAACAGAACAATTAAGGATGAGTTGTATCATCTGGACACAATCAGGAAGGAAAAAAGAGCAGAAGATTTAGATTGTTGTGGTA
GAAGAAACAGTCAATGCACAAAAATAAAGGTTCATCTGCATTTGTGTTGTCATGAGGAACAAATCTTGCCAATTCTTGTGTGGCGATGCCTAAGACTCTTTGGCACAAAC
GTTTAG

mRNA sequence

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Protein sequence

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MNPEFEKWVTTDLLLFGWLYNSMMLEVAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQTFQTTSKGNSKMEDYLIIMKTNADKLGQARRSPVPKRAFISQALLGLDE
VYNPVIAVTQGKPEISWIDMQSELLTFEKRLEHQDTQKNTENIIQNVVVNIAQNRNISDFRKYSNHQFHGNNRNNSKGQRGGFNIGRGRGKGRGNKPTCQVCEKYGNSAL
VCYNRFNNEFLSPLVQDRGAQSSNFSKHSNLTVLVTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSDLSNPSEYSGIEKIMVGNGDSLHISYIGNAYLTDGINGLNL
KNVLCVPDITKNLVSVSKLAQDNNVYIEFHGCYCFIKDKDTGRTLLNRTIKDELYHLDTIRKEKRAEDLDCCGRRNSQCTKIKVHLHLCCHEEQILPILVWRCLRLFGTN
V

Pay0003642 (gene) of Melon (Payzawat) v1 genome