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Pay0004097 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0004097
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr06:24160274..24160549
RNA-Seq ExpressionPay0004097
SyntenyPay0004097
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]3.1e-1453.95Show/hide
Query:  PKFVNAPINSNNIELKLGWIQMACDHTYRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW
        P  +N PIN NN ELK G IQMA +  +RG   +DPHKHL  FL+I  T+ +  V+ +AI+L+  PFSLQDRAK W
Subjt:  PKFVNAPINSNNIELKLGWIQMACDHTYRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW

XP_038972405.1 uncharacterized protein LOC120104748 [Phoenix dactylifera]3.4e-1348.68Show/hide
Query:  PKFVNAPINSNNIELKLGWIQMACDHTYRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW
        P  V   +N+NN E+K G IQM     + G P++DPH HL  FL+I +TI +  V+ +AIRL+  PFSL+D+AKAW
Subjt:  PKFVNAPINSNNIELKLGWIQMACDHTYRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW

XP_038973879.1 uncharacterized protein LOC120105457 [Phoenix dactylifera]3.4e-1348.68Show/hide
Query:  PKFVNAPINSNNIELKLGWIQMACDHTYRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW
        P  V   +N+NN E+K G IQM     + G P++DPH HL  FL+I +TI +  V+ +AIRL+  PFSL+D+AKAW
Subjt:  PKFVNAPINSNNIELKLGWIQMACDHTYRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW

XP_038976409.1 uncharacterized protein LOC113461320 [Phoenix dactylifera]3.4e-1348.68Show/hide
Query:  PKFVNAPINSNNIELKLGWIQMACDHTYRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW
        P  V   +N+NN E+K G IQM     + G P++DPH HL  FL+I +TI +  V+ +AIRL+  PFSL+D+AKAW
Subjt:  PKFVNAPINSNNIELKLGWIQMACDHTYRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW

XP_038976653.1 uncharacterized protein LOC120107448 [Phoenix dactylifera]3.4e-1348.68Show/hide
Query:  PKFVNAPINSNNIELKLGWIQMACDHTYRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW
        P  V   +N+NN E+K G IQM     + G P++DPH HL  FL+I +TI +  V+ +AIRL+  PFSL+D+AKAW
Subjt:  PKFVNAPINSNNIELKLGWIQMACDHTYRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW

TrEMBL top hitse value%identityAlignment
A0A1B5Z9P1 Retrotrans_gag domain-containing protein (Fragment)3.8e-1044.59Show/hide
Query:  VNAPINSNNIELKLGWIQMACDHT-YRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW
        VN P+ +NN ELK G IQM  + T +RG PT+DP+ HL  F+ + +++    VT  AIR++  P+SL D+A  W
Subjt:  VNAPINSNNIELKLGWIQMACDHT-YRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW

A0A1B5Z9T0 Retrotrans_gag domain-containing protein (Fragment)3.8e-1044.59Show/hide
Query:  VNAPINSNNIELKLGWIQMACDHT-YRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW
        VN P+ +NN ELK G IQM  + T +RG PT+DP+ HL  F+ + +++    VT  AIR++  P+SL D+A  W
Subjt:  VNAPINSNNIELKLGWIQMACDHT-YRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW

A0A2K3MSV7 Uncharacterized protein (Fragment)2.0e-1145.21Show/hide
Query:  VNAPINSNNIELKLGWIQMACDHTYRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW
        VN P+ +NN ELK G IQM  + T+RG PT+DP+ HL  F+ + +++    VT  AIR++  P+SL D+A  W
Subjt:  VNAPINSNNIELKLGWIQMACDHTYRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW

A0A6J1DU19 uncharacterized protein LOC1110243619.9e-1150.72Show/hide
Query:  VNAPINSNNIELKLGWIQMACDHTYRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDR
        +N PIN+NN ELK G IQM  ++T+RG  T+DP+ HL  FLD+  T+ +  V  +AIRL+  P SLQD+
Subjt:  VNAPINSNNIELKLGWIQMACDHTYRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDR

A0A6P6XAQ1 Reverse transcriptase4.9e-1045.21Show/hide
Query:  VNAPINSNNIELKLGWIQMACDHTYRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW
        V   +N+NN E+K   IQM     Y G  T+DP+ HL  FL+I +TI    V+ +AI+L+  PFSL+D+AK W
Subjt:  VNAPINSNNIELKLGWIQMACDHTYRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACCCAAATTTGTCAATGCACCTATCAACTCTAACAACATTGAGCTTAAATTGGGATGGATTCAAATGGCTTGTGACCATACCTATAGAGGATGCCCAACCAAAGA
TCCTCATAAACATCTTGGAGAATTCCTTGACATAGTTGAGACAATAATGATTAAGAGAGTAACTATTAATGCAATCAGACTACAATTCTGTCCTTTTTCTTTGCAGGATC
GTGCTAAGGCTTGGCCTAAGAACTCTACCTTCGACAAACATCACAACTTGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCACCCAAATTTGTCAATGCACCTATCAACTCTAACAACATTGAGCTTAAATTGGGATGGATTCAAATGGCTTGTGACCATACCTATAGAGGATGCCCAACCAAAGA
TCCTCATAAACATCTTGGAGAATTCCTTGACATAGTTGAGACAATAATGATTAAGAGAGTAACTATTAATGCAATCAGACTACAATTCTGTCCTTTTTCTTTGCAGGATC
GTGCTAAGGCTTGGCCTAAGAACTCTACCTTCGACAAACATCACAACTTGGGATGA
Protein sequenceShow/hide protein sequence
MPPKFVNAPINSNNIELKLGWIQMACDHTYRGCPTKDPHKHLGEFLDIVETIMIKRVTINAIRLQFCPFSLQDRAKAWPKNSTFDKHHNLG