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Pay0004353 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0004353
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGag-pol polyprotein
Genome locationchr12:13697044..13697858
RNA-Seq ExpressionPay0004353
SyntenyPay0004353
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033068.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.3e-8387.37Show/hide
Query:  IFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDCR
        IFLNGLLPEFGM K QILSDSKIPSLDDAFTRVLRIESS NGVSIPQSSSA ISKNNN RAPRAMDGNVQRKSYDHRKP ST+IVCN   K GHIKRDCR
Subjt:  IFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDCR

Query:  KLLYKNSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSGAITHMIGNSRLFSK
        KLLYKNSQQSQHAQIASTCDIPE  VTIS DEY KFQNYQD LQA SSSTP+ASTVAPG TKCLLTSSTKWVI S A THM GNSRLFS+
Subjt:  KLLYKNSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSGAITHMIGNSRLFSK

KAA0035572.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.0e-9499.45Show/hide
Query:  MIFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDC
        MIFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNN RAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDC
Subjt:  MIFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDC

Query:  RKLLYKNSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSGAITHMI
        RKLLYKNSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSGAITHMI
Subjt:  RKLLYKNSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSGAITHMI

TYK30615.1 Copia protein [Cucumis melo var. makuwa]7.1e-6480.72Show/hide
Query:  LLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDCRKLLYK
        LLP     K QILSDSKIPSLD+AFTRVLR ESS NGVSIPQSS++ ISKNNN RAPRAMDGNV  KSYDHRKPDSTEIVCN   K  H KRDCRKLLYK
Subjt:  LLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDCRKLLYK

Query:  NSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKW
        NSQQSQHAQIASTCDIPE  +TIS +E AK QNYQDSLQA SSSTP+ASTV PG TKCLLTSSTKW
Subjt:  NSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKW

XP_031738594.1 uncharacterized protein LOC116402733 isoform X1 [Cucumis sativus]1.3e-7377Show/hide
Query:  MIFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDC
        MIFLNGLLPEFGMAK QILSDSKIPSLDDAFTRVLRIESS   VSIPQ SSA  SKNNN RAP       QR S DHRKP+S EIVCN   K GH+KRDC
Subjt:  MIFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDC

Query:  RKLLYKNSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSGAITHMIGNSRLFSKLSCDEEDYW
        RKLLYKNSQ+SQHAQIASTCDIPE  VTIS DE+AKFQNYQ+SLQA SSSTP+ASTVAPG  KCLLTSSTKWVI SGA  HM G        SCDEEDYW
Subjt:  RKLLYKNSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSGAITHMIGNSRLFSKLSCDEEDYW

XP_031744753.1 uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus]1.1e-7279.06Show/hide
Query:  MIFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDC
        MIFLNGLLPEFGMAK QILSDSKIPSLDDAFTRVLRIESS   VSIPQ SSA  SKNNN RAP       QR S DHRKP+S EIVCN   K GH+KRDC
Subjt:  MIFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDC

Query:  RKLLYKNSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSGAITHMIGNSRLFSK
        RKLLYKNSQ+SQHAQIASTCDIPE  VTIS DE+AKFQNYQ+SLQA SSSTP+ASTVAPG  KCLLTSSTKWVI SGA  HM GNS LFS+
Subjt:  RKLLYKNSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSGAITHMIGNSRLFSK

TrEMBL top hitse value%identityAlignment
A0A5A7SR90 Gag-pol polyprotein1.1e-8387.37Show/hide
Query:  IFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDCR
        IFLNGLLPEFGM K QILSDSKIPSLDDAFTRVLRIESS NGVSIPQSSSA ISKNNN RAPRAMDGNVQRKSYDHRKP ST+IVCN   K GHIKRDCR
Subjt:  IFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDCR

Query:  KLLYKNSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSGAITHMIGNSRLFSK
        KLLYKNSQQSQHAQIASTCDIPE  VTIS DEY KFQNYQD LQA SSSTP+ASTVAPG TKCLLTSSTKWVI S A THM GNSRLFS+
Subjt:  KLLYKNSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSGAITHMIGNSRLFSK

A0A5A7SVC9 Uncharacterized protein6.5e-5569.57Show/hide
Query:  MIFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDC
        MI LNGLLPEFGM K QILS+SKIPSLDDAFTRVLRIESS NGVSIPQS+S  ISKNNN RAPRAMDGNVQRK  D                        
Subjt:  MIFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDC

Query:  RKLLYKNSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSGAITHMIG
               +Q  Q   IASTCDIPE  +TIS DEYAKFQNYQDSLQALSSSTPVASTVAPG TKCLLTSSTKWVI SGA THM G
Subjt:  RKLLYKNSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSGAITHMIG

A0A5A7T406 Copia protein2.9e-6380.12Show/hide
Query:  LLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDCRKLLYK
        LLP     K QILSDSKIPSLD+AFTRVL  ESS NGVSIPQSS++ ISKNNN RAPRAMDGNV  KSYDHRKPDSTEIVCN   K  H KRDCRKLLYK
Subjt:  LLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDCRKLLYK

Query:  NSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKW
        NSQQSQHAQIASTCDIPE  +TIS +E AK QNYQDSLQA SSSTP+ASTV PG TKCLLTSSTKW
Subjt:  NSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKW

A0A5D3E4V8 Putative mitochondrial protein2.4e-9499.45Show/hide
Query:  MIFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDC
        MIFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNN RAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDC
Subjt:  MIFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDC

Query:  RKLLYKNSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSGAITHMI
        RKLLYKNSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSGAITHMI
Subjt:  RKLLYKNSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSGAITHMI

A0A5D3E5M8 Copia protein3.4e-6480.72Show/hide
Query:  LLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDCRKLLYK
        LLP     K QILSDSKIPSLD+AFTRVLR ESS NGVSIPQSS++ ISKNNN RAPRAMDGNV  KSYDHRKPDSTEIVCN   K  H KRDCRKLLYK
Subjt:  LLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDCRKLLYK

Query:  NSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKW
        NSQQSQHAQIASTCDIPE  +TIS +E AK QNYQDSLQA SSSTP+ASTV PG TKCLLTSSTKW
Subjt:  NSQQSQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTTTTTAAATGGACTTTTACCTGAATTTGGAATGGCGAAGGTACAAATTCTCTCTGACTCTAAGATTCCATCATTAGACGATGCTTTTACTCGTGTTCTTCGCAT
TGAAAGCTCTCTGAATGGTGTATCTATTCCTCAATCTAGTAGTGCTTTCATTAGCAAGAACAATAACCGTCGAGCACCTCGAGCGATGGATGGCAATGTTCAGAGGAAGA
GTTATGATCATCGAAAACCAGATTCTACAGAGATTGTTTGTAACTGTTATCCTAAGAAAGGCCATATAAAACGTGATTGTCGAAAATTGTTATATAAGAATAGTCAACAA
TCTCAACATGCTCAGATAGCTTCCACATGTGATATACCAGAGGTGTTAGTTACGATTTCTGTTGATGAGTATGCTAAGTTTCAAAACTACCAAGATTCATTACAAGCGTT
ATCTTCCTCTACTCCCGTTGCATCCACTGTTGCCCCAGGTACTACCAAGTGTCTTCTTACATCATCTACAAAATGGGTCATAACCTCTGGTGCCATAACCCATATGATAG
GTAATTCTCGCCTATTTTCTAAACTATCGTGTGACGAAGAAGATTATTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCTTTTTAAATGGACTTTTACCTGAATTTGGAATGGCGAAGGTACAAATTCTCTCTGACTCTAAGATTCCATCATTAGACGATGCTTTTACTCGTGTTCTTCGCAT
TGAAAGCTCTCTGAATGGTGTATCTATTCCTCAATCTAGTAGTGCTTTCATTAGCAAGAACAATAACCGTCGAGCACCTCGAGCGATGGATGGCAATGTTCAGAGGAAGA
GTTATGATCATCGAAAACCAGATTCTACAGAGATTGTTTGTAACTGTTATCCTAAGAAAGGCCATATAAAACGTGATTGTCGAAAATTGTTATATAAGAATAGTCAACAA
TCTCAACATGCTCAGATAGCTTCCACATGTGATATACCAGAGGTGTTAGTTACGATTTCTGTTGATGAGTATGCTAAGTTTCAAAACTACCAAGATTCATTACAAGCGTT
ATCTTCCTCTACTCCCGTTGCATCCACTGTTGCCCCAGGTACTACCAAGTGTCTTCTTACATCATCTACAAAATGGGTCATAACCTCTGGTGCCATAACCCATATGATAG
GTAATTCTCGCCTATTTTCTAAACTATCGTGTGACGAAGAAGATTATTGGTAG
Protein sequenceShow/hide protein sequence
MIFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKNNNRRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDCRKLLYKNSQQ
SQHAQIASTCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPGTTKCLLTSSTKWVITSGAITHMIGNSRLFSKLSCDEEDYW