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Pay0004524 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0004524
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Genome locationchr02:14590896..14593899
RNA-Seq ExpressionPay0004524
SyntenyPay0004524
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
InterPro domainsIPR029071 - Ubiquitin-like domain superfamily
IPR039690 - U11/U12 small nuclear ribonucleoprotein 25kDa protein
IPR040610 - SNRNP25, ubiquitin-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443963.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucumis melo]6.9e-6788.11Show/hide
Query:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQVFPSSLFYFRSLFTSRNQREIRVLII
        MDDKSRIQHFGIRDGDQVFPSSLF  ++     + + + V+ I
Subjt:  MDDKSRIQHFGIRDGDQVFPSSLFYFRSLFTSRNQREIRVLII

XP_008443964.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo]7.9e-6399.15Show/hide
Query:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQV
        MDDKSRIQHFGIRDGDQ+
Subjt:  MDDKSRIQHFGIRDGDQV

XP_011655436.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus]8.8e-6297.46Show/hide
Query:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQV
        MDDKSRIQHFGIRDGDQ+
Subjt:  MDDKSRIQHFGIRDGDQV

XP_023531556.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo]2.7e-4778.45Show/hide
Query:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS+IEP +PDSCCISPRF +NSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+VA +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL
Subjt:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGD
        +D+KSRI+ FGIRDGD
Subjt:  MDDKSRIQHFGIRDGD

XP_038880358.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida]7.9e-5586.44Show/hide
Query:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS+IEP+VPDSCCISPRF +NSFRRS RY +LPPQL+RLSVLKLDGSSFEVQ+ RTATVAAVRDAVESVFC MSMNKED  ISWPHVWGHFCLCYKHFKL
Subjt:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQV
        +DDKSRI+HFGIRDGDQ+
Subjt:  MDDKSRIQHFGIRDGDQV

TrEMBL top hitse value%identityAlignment
A0A0A0LT94 Ubiquitin_4 domain-containing protein4.2e-6297.46Show/hide
Query:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQV
        MDDKSRIQHFGIRDGDQ+
Subjt:  MDDKSRIQHFGIRDGDQV

A0A1S3B9C0 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X13.3e-6788.11Show/hide
Query:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQVFPSSLFYFRSLFTSRNQREIRVLII
        MDDKSRIQHFGIRDGDQVFPSSLF  ++     + + + V+ I
Subjt:  MDDKSRIQHFGIRDGDQVFPSSLFYFRSLFTSRNQREIRVLII

A0A1S3BA12 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X23.8e-6399.15Show/hide
Query:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQV
        MDDKSRIQHFGIRDGDQ+
Subjt:  MDDKSRIQHFGIRDGDQV

A0A5A7U4H4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X23.8e-6399.15Show/hide
Query:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQV
        MDDKSRIQHFGIRDGDQ+
Subjt:  MDDKSRIQHFGIRDGDQV

A0A6J1EHC7 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like5.0e-4777.59Show/hide
Query:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        M +IEP +PDSCCISPRF +NSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+VA +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL
Subjt:  MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGD
        +D+KSRI+ FGIRDGD
Subjt:  MDDKSRIQHFGIRDGD

SwissProt top hitse value%identityAlignment
Q3ZBQ4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein1.0e-0430.23Show/hide
Query:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQV
        Q + + V K+DG    V V + ATV  ++ A++  + ++   +E    +ISW +VW  + L     KL +D+ +++ +GIR+ D+V
Subjt:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQV

Q84WS8 U11/U12 small nuclear ribonucleoprotein 25 kDa protein4.3e-1143.37Show/hide
Query:  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQV
        +RLSV+KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL   + KL+DD + +Q  GIR+  QV
Subjt:  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQV

Q8VIK1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein7.8e-0530.23Show/hide
Query:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQV
        Q + + V K+DG    V V + ATV  ++ A++  + ++   +E    +ISW +VW  + L     KL +D+ +++ +GIR+ D+V
Subjt:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQV

Q9BV90 U11/U12 small nuclear ribonucleoprotein 25 kDa protein6.0e-0530.23Show/hide
Query:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQV
        Q + + V K+DG    V V ++ATV  ++ A++  + ++   +E    +ISW +VW  + L     KL +D+ +++ +GIR+ D+V
Subjt:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQV

Arabidopsis top hitse value%identityAlignment
AT1G80060.1 Ubiquitin-like superfamily protein6.8e-2045.22Show/hide
Query:  ISPRFHTN---------SFRRSLRYNRLPPQ-LLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDD
        I PRF ++         S RRS  Y +LPPQ  ++LSV+KL+GS F+V+V +  +VA ++ AVE VF    +      ISW HVWGHFCLCY+  +L++D
Subjt:  ISPRFHTN---------SFRRSLRYNRLPPQ-LLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDD

Query:  KSRIQHFGIRDGDQV
        K+ I++ G+ DGDQ+
Subjt:  KSRIQHFGIRDGDQV

AT3G07860.1 Ubiquitin-like superfamily protein3.0e-1243.37Show/hide
Query:  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQV
        +RLSV+KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL   + KL+DD + +Q  GIR+  QV
Subjt:  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQV

AT4G32270.1 Ubiquitin-like superfamily protein9.4e-2248.42Show/hide
Query:  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQV
        RRS  YN++P + ++L+VLKLDGSSF +QV +TATV  ++ AVE+ F  + ++     ISWPHVWG FCL Y+  +L+++   +  FGI+DGDQ+
Subjt:  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQV

AT4G32270.2 Ubiquitin-like superfamily protein2.7e-1645.98Show/hide
Query:  LPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQV
        +P + ++L+VLKLDGSSF   V +TATV  ++ AVE+ F  + ++     ISWPHVWG FCL Y+  +L+++   +  FGI+DGDQ+
Subjt:  LPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQV

AT5G25340.1 Ubiquitin-like superfamily protein1.0e-2049.47Show/hide
Query:  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQV
        RR+  Y++LP + +RLSVLKLDGSSF+V V  +ATV  ++ A+E+ F  +   K    ISW HVWGHFCLC+   KL+ D   I ++G++DGD+V
Subjt:  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCAAATTGAACCCATTGTCCCCGATTCTTGCTGTATCTCCCCTCGCTTTCATACCAACAGTTTTCGCCGCTCTCTTCGCTACAATCGCCTTCCGCCCCAGCTCCT
CCGCCTCTCCGTCTTGAAATTGGACGGCTCTTCTTTCGAGGTGCAAGTTGAAAGGACGGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGT
CGATGAATAAAGAAGATTTCAATATTTCTTGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTCGTATTCAACATTTT
GGAATTCGTGATGGTGACCAGGTATTCCCATCTTCCTTGTTTTATTTCCGATCTTTGTTTACTAGTCGTAATCAGAGAGAGATTAGGGTACTTATCATCTTACATGCTGC
TTTCCAGTGTTCAATGGAGAAGCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCAAATTGAACCCATTGTCCCCGATTCTTGCTGTATCTCCCCTCGCTTTCATACCAACAGTTTTCGCCGCTCTCTTCGCTACAATCGCCTTCCGCCCCAGCTCCT
CCGCCTCTCCGTCTTGAAATTGGACGGCTCTTCTTTCGAGGTGCAAGTTGAAAGGACGGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGT
CGATGAATAAAGAAGATTTCAATATTTCTTGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTCGTATTCAACATTTT
GGAATTCGTGATGGTGACCAGGTATTCCCATCTTCCTTGTTTTATTTCCGATCTTTGTTTACTAGTCGTAATCAGAGAGAGATTAGGGTACTTATCATCTTACATGCTGC
TTTCCAGTGTTCAATGGAGAAGCTCTGA
Protein sequenceShow/hide protein sequence
MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHF
GIRDGDQVFPSSLFYFRSLFTSRNQREIRVLIILHAAFQCSMEKL