; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0005249 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0005249
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReverse transcriptase
Genome locationchr06:8930596..8932571
RNA-Seq ExpressionPay0005249
SyntenyPay0005249
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5804657.1 putative nucleotidyltransferase, Ribonuclease H [Helianthus annuus]1.0e-20555.1Show/hide
Query:  KEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQI
        KE+LKL +A +IY + DS WVSPI VVPKKT IT+ +NE+GE+VP R+QNGWR+CI Y KLN  T+KDHFPL F+DQM++RLAG++++C LD +SGF+QI
Subjt:  KEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQI

Query:  PIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGIV
        P+A EDQ+KTTFTC +GT+A+RRMPFGL NAP TFQRCM+SIF D++E+ IEVFMDDFTVYGNSFD CL +L  IL R IETNLVLNYEKCHFMV  GI+
Subjt:  PIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGIV

Query:  LGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFVI
        LGH+VSSK +EVDK KIDI++   YP  +++VRSFL           +FSKI  P+  LLQKDV F+  + CK+AFD LK  LV+ PI+Q  +W+LPF I
Subjt:  LGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFVI

Query:  MCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLTI
        MCDASN A+GA+LGQR D+  HVIYYAS+TL+ AQSNY+TTEKE LAIVFAL+KF+ Y++G+ VIVY+D AA+           RL+RWVLLLQEF+L I
Subjt:  MCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLTI

Query:  KDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT----------------------------------------------
        +D+    N VADHLSRI+  +E MP+ + FPDEHLF   +  PWYADIVNYLVT                                              
Subjt:  KDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT----------------------------------------------

Query:  --------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDYV
                                              DS+ FCKSC  CQ+TG+LS R++MP  P+++CE+FD+WG+DFMGPFPSSFG +YILLAVDYV
Subjt:  --------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDYV

Query:  SKWVEAISTRTNDSP-------------FGIPRAIISDQGTHFCNRTVEALMRKYGV
        SKWVEA +TRTNDS              FG P+A ISD+G+HFCNRT+EAL +KYGV
Subjt:  SKWVEAISTRTNDSP-------------FGIPRAIISDQGTHFCNRTVEALMRKYGV

XP_031392147.1 uncharacterized protein LOC116204210 [Punica granatum]2.9e-21356.84Show/hide
Query:  MKEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQ
        MKE+LKL D  IIY + DS WVSPIHVVPKKT +T+VKNE+GE+VP R+QNGWR+CI Y KLN  T+KDHFPL F+DQM++RLAG+SYFCFLD +SG+YQ
Subjt:  MKEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQ

Query:  IPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGI
        I +A EDQ+KTTFTC +GT+A+RRMPFGL +APGTFQRCMMSIF D IE CIEVFMDDFTV+G+SFD CLA+L  +L+R IE+NLVLNYEKCHFMV+HGI
Subjt:  IPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGI

Query:  VLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFV
        VLGH++SS+ IEVDK K+D++    YP+ ++ +RSFL           +FSKIA PL +LLQKD  F+   NC++AFD LK+ L S PI+Q  +W LPF 
Subjt:  VLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFV

Query:  IMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLT
        IM DAS+ A+GA+LGQR+DK+ HVIYYAS+TL+ AQ NY+TTEKE LAIVFAL+KF+SY++GS ++V+TD AA+           RL+RW+LLLQEF+L 
Subjt:  IMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLT

Query:  IKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT---------------------------------------------
        IKDRK + NSVADHLSR+V+ +E +PI + FPDEHLF    + PWYAD+VN++VT                                             
Subjt:  IKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT---------------------------------------------

Query:  ---------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDY
                                               D+  FCK C  CQR G++SRRNEMP  P++ CEVFD+WGMDFMGPFPSSFG+ YILLAVDY
Subjt:  ---------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDY

Query:  VSKWVEAISTRTND-------------SPFGIPRAIISDQGTHFCNRTVEALMRKYGV
        VSKWVEA +TRTND             S FGIPRAIISDQGTHFCNR+VEALM+KYGV
Subjt:  VSKWVEAISTRTND-------------SPFGIPRAIISDQGTHFCNRTVEALMRKYGV

XP_031393661.1 uncharacterized protein LOC116205261 [Punica granatum]1.1e-21256.69Show/hide
Query:  MKEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQ
        MKE+LKL D  IIY + DS WVSPIHVVPKKT +T+VKNE+GE+VP R+QNGWR+CI Y KLN  T+KDHFPL F+DQM++RLAG+SYFCFLD +SG+YQ
Subjt:  MKEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQ

Query:  IPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGI
        I +A EDQ+KTTFTC +GT+A+RRMPFGL +APGTFQRCMMSIF D IE CIEVFMDDFTV+G+SFD CLA+L  +L+R IE+NLVLNYEKCHFMV+HGI
Subjt:  IPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGI

Query:  VLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFV
        VLGH++SS+ IEVDK K+D++    YP+ ++ +RSFL           +FSKIA PL +LLQKD  F+   NC++AFD LK+ L S PI+Q  +W LPF 
Subjt:  VLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFV

Query:  IMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLT
        IM DAS+ A+GA+LGQR+DK+ HVIYYAS+TL+ AQ  Y+TTEKE LAIVFAL+KF+SY++GS ++V+TD AA+           RL+RW+LLLQEF+L 
Subjt:  IMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLT

Query:  IKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT---------------------------------------------
        IKDRK + NSVADHLSR+V+ +E +PI + FPDEHLF    + PWYAD+VN++VT                                             
Subjt:  IKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT---------------------------------------------

Query:  ---------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDY
                                               D+  FCK C  CQR G++SRRNEMP  P++ CEVFD+WGMDFMGPFPSSFG+ YILLAVDY
Subjt:  ---------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDY

Query:  VSKWVEAISTRTND-------------SPFGIPRAIISDQGTHFCNRTVEALMRKYGV
        VSKWVEA +TRTND             S FGIPRAIISDQGTHFCNR+VEALM+KYGV
Subjt:  VSKWVEAISTRTND-------------SPFGIPRAIISDQGTHFCNRTVEALMRKYGV

XP_031400978.1 uncharacterized protein LOC116210952 [Punica granatum]1.1e-21256.69Show/hide
Query:  MKEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQ
        MKE+LKL D  IIY + DS WVSPIHVVPKKT +T+VKNE+GE+VP R+QNGWR+CI Y KLN  T+KDHFPL F+DQM++RLA +SYFCFLD +SG+YQ
Subjt:  MKEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQ

Query:  IPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGI
        I +A EDQ+KTTFTC +GT+A+RRMPFGL +APGTFQRCMMSIF D IE CIEVFMDDFTV+G+SFD CLA+L  +L+R IE+NLVLNYEKCHFMV+HGI
Subjt:  IPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGI

Query:  VLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFV
        VLGH++SS+ IEVDK K+D++    YP+ ++ +RSFL           +FSKIA PL +LLQKD  F+   NC++AFD LK+ L S PI+Q  +W LPF 
Subjt:  VLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFV

Query:  IMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLT
        IM DAS+ A+GA+LGQR+DK+ HVIYYAS+TL+ AQ NY+TTEKE LAIVFAL+KF+SY++GS ++V+TD AA+           RL+RW+LLLQEF+L 
Subjt:  IMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLT

Query:  IKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT---------------------------------------------
        IKDRK + NSVADHLSR+V+ +E +PI + FPDEHLF    + PWYAD+VN++VT                                             
Subjt:  IKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT---------------------------------------------

Query:  ---------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDY
                                               D+  FCK C  CQR G++SRRNEMP  P++ CEVFD+WGMDFMGPFPSSFG+ YILLAVDY
Subjt:  ---------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDY

Query:  VSKWVEAISTRTND-------------SPFGIPRAIISDQGTHFCNRTVEALMRKYGV
        VSKWVEA +TRTND             S FGIPRAIISDQGTHFCNR+VEALM+KYGV
Subjt:  VSKWVEAISTRTND-------------SPFGIPRAIISDQGTHFCNRTVEALMRKYGV

XP_031402684.1 uncharacterized protein LOC116212259 [Punica granatum]2.2e-21356.84Show/hide
Query:  MKEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQ
        MKE+LKL D  IIY + DS WVSPIHVVPKKT +T+VKNE+GE+VP R+QNGWR+CI Y KLN  T+KDHFPL F+DQM++RLAG+SYFCFLD +SG+YQ
Subjt:  MKEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQ

Query:  IPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGI
        I +A EDQ+KTTFTC +GT+A+RRMPFGL +APGTFQRCMMSIF D IE CIEVFMDDFTV+G+SFD CLA+L  +L+R IE+NLVLNYEKCHFMV+HGI
Subjt:  IPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGI

Query:  VLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFV
        VLGH++SS+ IEVDK K+D++    YP+ ++ +RSFL           +FSKIA PL +LLQKD  F+   NC++AFD LK+ L S PI+Q  +W LPF 
Subjt:  VLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFV

Query:  IMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLT
        IM DAS+ A+GA+LGQR+DK+ HVIYYAS+TL+ AQ NY+TTEKE LAIVFAL+KF+SY++GS ++V+TD AA+           RL+RW+LLLQEF+L 
Subjt:  IMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLT

Query:  IKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT---------------------------------------------
        IKDRK + NSVADHLSR+V+ +E +PI + FPDEHLF    + PWYAD+VN++VT                                             
Subjt:  IKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT---------------------------------------------

Query:  ---------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDY
                                               D+  FCK C  CQR G++SRRNEMP  P++ CEVFD+WGMDFMGPFPSSFG+ YILLAVDY
Subjt:  ---------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDY

Query:  VSKWVEAISTRTND-------------SPFGIPRAIISDQGTHFCNRTVEALMRKYGV
        VSKWVEA +TRTND             S FGIPRAIISDQGTHFCNR+VEALM+KYGV
Subjt:  VSKWVEAISTRTND-------------SPFGIPRAIISDQGTHFCNRTVEALMRKYGV

TrEMBL top hitse value%identityAlignment
A0A251UM01 Putative reverse transcriptase domain, Ribonuclease H-like domain protein4.9e-20655.1Show/hide
Query:  KEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQI
        KE+LKL +A +IY + DS WVSPI VVPKKT IT+ +NE+GE+VP R+QNGWR+CI Y KLN  T+KDHFPL F+DQM++RLAG++++C LD +SGF+QI
Subjt:  KEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQI

Query:  PIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGIV
        P+A EDQ+KTTFTC +GT+A+RRMPFGL NAP TFQRCM+SIF D++E+ IEVFMDDFTVYGNSFD CL +L  IL R IETNLVLNYEKCHFMV  GI+
Subjt:  PIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGIV

Query:  LGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFVI
        LGH+VSSK +EVDK KIDI++   YP  +++VRSFL           +FSKI  P+  LLQKDV F+  + CK+AFD LK  LV+ PI+Q  +W+LPF I
Subjt:  LGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFVI

Query:  MCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLTI
        MCDASN A+GA+LGQR D+  HVIYYAS+TL+ AQSNY+TTEKE LAIVFAL+KF+ Y++G+ VIVY+D AA+           RL+RWVLLLQEF+L I
Subjt:  MCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLTI

Query:  KDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT----------------------------------------------
        +D+    N VADHLSRI+  +E MP+ + FPDEHLF   +  PWYADIVNYLVT                                              
Subjt:  KDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT----------------------------------------------

Query:  --------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDYV
                                              DS+ FCKSC  CQ+TG+LS R++MP  P+++CE+FD+WG+DFMGPFPSSFG +YILLAVDYV
Subjt:  --------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDYV

Query:  SKWVEAISTRTNDSP-------------FGIPRAIISDQGTHFCNRTVEALMRKYGV
        SKWVEA +TRTNDS              FG P+A ISD+G+HFCNRT+EAL +KYGV
Subjt:  SKWVEAISTRTNDSP-------------FGIPRAIISDQGTHFCNRTVEALMRKYGV

A0A6P8D4X0 Reverse transcriptase1.4e-21356.84Show/hide
Query:  MKEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQ
        MKE+LKL D  IIY + DS WVSPIHVVPKKT +T+VKNE+GE+VP R+QNGWR+CI Y KLN  T+KDHFPL F+DQM++RLAG+SYFCFLD +SG+YQ
Subjt:  MKEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQ

Query:  IPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGI
        I +A EDQ+KTTFTC +GT+A+RRMPFGL +APGTFQRCMMSIF D IE CIEVFMDDFTV+G+SFD CLA+L  +L+R IE+NLVLNYEKCHFMV+HGI
Subjt:  IPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGI

Query:  VLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFV
        VLGH++SS+ IEVDK K+D++    YP+ ++ +RSFL           +FSKIA PL +LLQKD  F+   NC++AFD LK+ L S PI+Q  +W LPF 
Subjt:  VLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFV

Query:  IMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLT
        IM DAS+ A+GA+LGQR+DK+ HVIYYAS+TL+ AQ NY+TTEKE LAIVFAL+KF+SY++GS ++V+TD AA+           RL+RW+LLLQEF+L 
Subjt:  IMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLT

Query:  IKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT---------------------------------------------
        IKDRK + NSVADHLSR+V+ +E +PI + FPDEHLF    + PWYAD+VN++VT                                             
Subjt:  IKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT---------------------------------------------

Query:  ---------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDY
                                               D+  FCK C  CQR G++SRRNEMP  P++ CEVFD+WGMDFMGPFPSSFG+ YILLAVDY
Subjt:  ---------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDY

Query:  VSKWVEAISTRTND-------------SPFGIPRAIISDQGTHFCNRTVEALMRKYGV
        VSKWVEA +TRTND             S FGIPRAIISDQGTHFCNR+VEALM+KYGV
Subjt:  VSKWVEAISTRTND-------------SPFGIPRAIISDQGTHFCNRTVEALMRKYGV

A0A6P8DJV3 Reverse transcriptase5.4e-21356.69Show/hide
Query:  MKEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQ
        MKE+LKL D  IIY + DS WVSPIHVVPKKT +T+VKNE+GE+VP R+QNGWR+CI Y KLN  T+KDHFPL F+DQM++RLAG+SYFCFLD +SG+YQ
Subjt:  MKEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQ

Query:  IPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGI
        I +A EDQ+KTTFTC +GT+A+RRMPFGL +APGTFQRCMMSIF D IE CIEVFMDDFTV+G+SFD CLA+L  +L+R IE+NLVLNYEKCHFMV+HGI
Subjt:  IPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGI

Query:  VLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFV
        VLGH++SS+ IEVDK K+D++    YP+ ++ +RSFL           +FSKIA PL +LLQKD  F+   NC++AFD LK+ L S PI+Q  +W LPF 
Subjt:  VLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFV

Query:  IMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLT
        IM DAS+ A+GA+LGQR+DK+ HVIYYAS+TL+ AQ  Y+TTEKE LAIVFAL+KF+SY++GS ++V+TD AA+           RL+RW+LLLQEF+L 
Subjt:  IMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLT

Query:  IKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT---------------------------------------------
        IKDRK + NSVADHLSR+V+ +E +PI + FPDEHLF    + PWYAD+VN++VT                                             
Subjt:  IKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT---------------------------------------------

Query:  ---------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDY
                                               D+  FCK C  CQR G++SRRNEMP  P++ CEVFD+WGMDFMGPFPSSFG+ YILLAVDY
Subjt:  ---------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDY

Query:  VSKWVEAISTRTND-------------SPFGIPRAIISDQGTHFCNRTVEALMRKYGV
        VSKWVEA +TRTND             S FGIPRAIISDQGTHFCNR+VEALM+KYGV
Subjt:  VSKWVEAISTRTND-------------SPFGIPRAIISDQGTHFCNRTVEALMRKYGV

A0A6P8E7C5 Reverse transcriptase5.4e-21356.69Show/hide
Query:  MKEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQ
        MKE+LKL D  IIY + DS WVSPIHVVPKKT +T+VKNE+GE+VP R+QNGWR+CI Y KLN  T+KDHFPL F+DQM++RLA +SYFCFLD +SG+YQ
Subjt:  MKEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQ

Query:  IPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGI
        I +A EDQ+KTTFTC +GT+A+RRMPFGL +APGTFQRCMMSIF D IE CIEVFMDDFTV+G+SFD CLA+L  +L+R IE+NLVLNYEKCHFMV+HGI
Subjt:  IPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGI

Query:  VLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFV
        VLGH++SS+ IEVDK K+D++    YP+ ++ +RSFL           +FSKIA PL +LLQKD  F+   NC++AFD LK+ L S PI+Q  +W LPF 
Subjt:  VLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFV

Query:  IMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLT
        IM DAS+ A+GA+LGQR+DK+ HVIYYAS+TL+ AQ NY+TTEKE LAIVFAL+KF+SY++GS ++V+TD AA+           RL+RW+LLLQEF+L 
Subjt:  IMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLT

Query:  IKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT---------------------------------------------
        IKDRK + NSVADHLSR+V+ +E +PI + FPDEHLF    + PWYAD+VN++VT                                             
Subjt:  IKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT---------------------------------------------

Query:  ---------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDY
                                               D+  FCK C  CQR G++SRRNEMP  P++ CEVFD+WGMDFMGPFPSSFG+ YILLAVDY
Subjt:  ---------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDY

Query:  VSKWVEAISTRTND-------------SPFGIPRAIISDQGTHFCNRTVEALMRKYGV
        VSKWVEA +TRTND             S FGIPRAIISDQGTHFCNR+VEALM+KYGV
Subjt:  VSKWVEAISTRTND-------------SPFGIPRAIISDQGTHFCNRTVEALMRKYGV

A0A6P8E830 Reverse transcriptase1.1e-21356.84Show/hide
Query:  MKEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQ
        MKE+LKL D  IIY + DS WVSPIHVVPKKT +T+VKNE+GE+VP R+QNGWR+CI Y KLN  T+KDHFPL F+DQM++RLAG+SYFCFLD +SG+YQ
Subjt:  MKEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQ

Query:  IPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGI
        I +A EDQ+KTTFTC +GT+A+RRMPFGL +APGTFQRCMMSIF D IE CIEVFMDDFTV+G+SFD CLA+L  +L+R IE+NLVLNYEKCHFMV+HGI
Subjt:  IPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGI

Query:  VLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFV
        VLGH++SS+ IEVDK K+D++    YP+ ++ +RSFL           +FSKIA PL +LLQKD  F+   NC++AFD LK+ L S PI+Q  +W LPF 
Subjt:  VLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFV

Query:  IMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLT
        IM DAS+ A+GA+LGQR+DK+ HVIYYAS+TL+ AQ NY+TTEKE LAIVFAL+KF+SY++GS ++V+TD AA+           RL+RW+LLLQEF+L 
Subjt:  IMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLT

Query:  IKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT---------------------------------------------
        IKDRK + NSVADHLSR+V+ +E +PI + FPDEHLF    + PWYAD+VN++VT                                             
Subjt:  IKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVT---------------------------------------------

Query:  ---------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDY
                                               D+  FCK C  CQR G++SRRNEMP  P++ CEVFD+WGMDFMGPFPSSFG+ YILLAVDY
Subjt:  ---------------------------------------DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDY

Query:  VSKWVEAISTRTND-------------SPFGIPRAIISDQGTHFCNRTVEALMRKYGV
        VSKWVEA +TRTND             S FGIPRAIISDQGTHFCNR+VEALM+KYGV
Subjt:  VSKWVEAISTRTND-------------SPFGIPRAIISDQGTHFCNRTVEALMRKYGV

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.7e-6036.36Show/hide
Query:  IYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQIPIACEDQKKTT
        I    +S + SPI VVPKK      ++  G       +  +RI I Y KLNE+T  D  P+  +D+++ +L   +YF  +D   GF+QI +  E   KT 
Subjt:  IYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQIPIACEDQKKTT

Query:  FTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGIVLGHLVSSKEIE
        F+  +G Y + RMPFGL NAP TFQRCM  I    + K   V++DD  V+  S D  L SL L+  +  + NL L  +KC F+      LGH+++   I+
Subjt:  FTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGIVLGHLVSSKEIE

Query:  VDKEKIDIMQKFSYPTCLKDVRSFLS----------NFSKIALPLTNLLQKDVPF-LIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFVIMCDASNLALG
         + EKI+ +QK+  PT  K++++FL           NF+ IA P+T  L+K++     +     AF  LK  +   PIL+  ++   F +  DAS++ALG
Subjt:  VDKEKIDIMQKFSYPTCLKDVRSFLS----------NFSKIALPLTNLLQKDVPF-LIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFVIMCDASNLALG

Query:  AILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLTIKDRKDANNSV
        A+L Q      H + Y SRTLN+ + NY+T EKE LAIV+A   F+ Y++G    + +D   +           +L RW + L EF+  IK  K   N V
Subjt:  AILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLTIKDRKDANNSV

Query:  ADHLSRI
        AD LSRI
Subjt:  ADHLSRI

P0CT41 Transposon Tf2-12 polyprotein4.4e-4730.39Show/hide
Query:  RICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQIPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIE
        R+ + Y  LN+  K + +PL  ++Q++ ++ G + F  LD  S ++ I +   D+ K  F C  G + +  MP+G+  AP  FQ  + +I  +  E  + 
Subjt:  RICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQIPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIE

Query:  VFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGIVLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFLSNF----------SKI
         +MDD  ++  S    +  ++ +L +    NL++N  KC F  S    +G+ +S K     +E ID + ++  P   K++R FL +           S++
Subjt:  VFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGIVLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFLSNF----------SKI

Query:  ALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFVIMCDASNLALGAILGQR-IDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFA
          PL NLL+KDV +       +A +++KQ LVS P+L+  +++   ++  DAS++A+GA+L Q+  D K + + Y S  +++AQ NY+ ++KE LAI+ +
Subjt:  ALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFVIMCDASNLALGAILGQR-IDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFA

Query:  LDKFKSYIIGS--PVIVYTDRAAV-------------RLVRWVLLLQEFNLTIKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYAD
        L  ++ Y+  +  P  + TD   +             RL RW L LQ+FN  I  R  + N +AD LSRIV + E  PI +D  D  +   N Q     D
Subjt:  LDKFKSYIIGS--PVIVYTDRAAV-------------RLVRWVLLLQEFNLTIKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYAD

Query:  IVNYLVTD
          N +VT+
Subjt:  IVNYLVTD

P10394 Retrovirus-related Pol polyprotein from transposon 4121.6e-5235.06Show/hide
Query:  STWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQIPIACEDQKKTTFTCDYG
        S + SP+ +VPKK+             P   +  WR+ I Y ++N+    D FPL  +D ++ +L    YF  LD  SGF+QI +    +  T+F+   G
Subjt:  STWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQIPIACEDQKKTTFTCDYG

Query:  TYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKC-IEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGIVLGHLVSSKEIEVDKEK
        +Y F R+PFGL  AP +FQR MM+I F  IE     ++MDD  V G S    L +L  +  +  E NL L+ EKC F +     LGH  + K I  D +K
Subjt:  TYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKC-IEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGIVLGHLVSSKEIEVDKEK

Query:  IDIMQKFSYP----------TCLKDVRSFLSNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFVIMCDASNLALGAILGQR
         D++Q +  P                R F+ NF+  +  +T L +K+VPF   D C+KAF  LK +L++  +LQ  +++  F I  DAS  A GA+L Q 
Subjt:  IDIMQKFSYP----------TCLKDVRSFLSNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFVIMCDASNLALGAILGQR

Query:  IDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLTIKDRKDANNSVADHLSR
         +     + YASR   + +SN +TTE+E  AI +A+  F+ YI G    V TD   +           +L R  L L+E+N T++  K  +N VAD LSR
Subjt:  IDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAV-----------RLVRWVLLLQEFNLTIKDRKDANNSVADHLSR

Query:  IVQKQ
        I  K+
Subjt:  IVQKQ

P20825 Retrovirus-related Pol polyprotein from transposon 2974.3e-5834.68Show/hide
Query:  KEVLKLKDARIIYHVLDSTWVSPIHVVP---KKTRITIVKNEKGEM-------------------VPMRMQ----NGWRICIYYWKLNEVTKKDHFPLHF
        KE  KL     I HVL++T  SPI+       +T    V+N+  EM                   VP +      N +R+ I Y KLNE+T  D +P+  
Subjt:  KEVLKLKDARIIYHVLDSTWVSPIHVVP---KKTRITIVKNEKGEM-------------------VPMRMQ----NGWRICIYYWKLNEVTKKDHFPLHF

Query:  LDQMIKRLAGRSYFCFLDEFSGFYQIPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLEL
        +D+++ +L    YF  +D   GF+QI +  E   KT F+   G Y + RMPFGL NAP TFQRCM +I    + K   V++DD  ++  S    L S++L
Subjt:  LDQMIKRLAGRSYFCFLDEFSGFYQIPIACEDQKKTTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLEL

Query:  ILNRYIETNLVLNYEKCHFMVSHGIVLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFLS----------NFSKIALPLTNLLQKDVPFLIDDNCK-
        +  +  + NL L  +KC F+      LGH+V+   I+ +  K+  +  +  PT  K++R+FL           N++ IA P+T+ L+K       D  K 
Subjt:  ILNRYIETNLVLNYEKCHFMVSHGIVLGHLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFLS----------NFSKIALPLTNLLQKDVPFLIDDNCK-

Query:  ---KAFDDLKQRLVSTPILQSLNWNLPFVIMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDR
           +AF+ LK  ++  PILQ  ++   FV+  DASNLALGA+L Q      H I + SRTLN  + NY+  EKE LAIV+A   F+ Y++G   ++ +D 
Subjt:  ---KAFDDLKQRLVSTPILQSLNWNLPFVIMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVIVYTDR

Query:  AAVR-----------LVRWVLLLQEFNLTIKDRKDANNSVADHLSRI
          +R           L RW + L E+   I   K   NSVAD LSRI
Subjt:  AAVR-----------LVRWVLLLQEFNLTIKDRKDANNSVADHLSRI

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus4.0e-5633.9Show/hide
Query:  DSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQIPIACEDQKKTTFTCDY
        +S + SPI +VPKK +        GE         +R+ + + +LN VT  D +P+  ++  +  L    YF  LD  SGF+QI +   D  KT F+   
Subjt:  DSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQIPIACEDQKKTTFTCDY

Query:  GTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGIVLGHLVSSKEIEVDKEK
        G Y F R+PFGL NAP  FQR +  I  + I K   V++DD  V+   +D    +L L+L    + NL +N EK HF+ +    LG++V++  I+ D +K
Subjt:  GTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGIVLGHLVSSKEIEVDKEK

Query:  IDIMQKFSYPTCLKDV----------RSFLSNFSKIALPLTNLLQ-----------KDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFVIMCDAS
        +  + +   PT +K++          R F+ +++K+A PLTNL +             VP  +D+   ++F+DLK  L S+ IL    +  PF +  DAS
Subjt:  IDIMQKFSYPTCLKDV----------RSFLSNFSKIALPLTNLLQ-----------KDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFVIMCDAS

Query:  NLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVI-VYTDRAAV-----------RLVRWVLLLQEFNLTIKDRK
        N A+GA+L Q    +   I Y SR+LN+ + NY T EKE LAI+++LD  ++Y+ G+  I VYTD   +           +L RW   ++E+N  +  + 
Subjt:  NLALGAILGQRIDKKLHVIYYASRTLNQAQSNYTTTEKEFLAIVFALDKFKSYIIGSPVI-VYTDRAAV-----------RLVRWVLLLQEFNLTIKDRK

Query:  DANNSVADHLSRI
          +N VAD LSRI
Subjt:  DANNSVADHLSRI

Arabidopsis top hitse value%identityAlignment
ATMG00750.1 GAG/POL/ENV polyprotein2.1e-0751.16Show/hide
Query:  DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFM
        D+  F  SC  CQR G+ ++RNEMP H ++  EVFD+WG+ FM
Subjt:  DSFSFCKSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFM

ATMG00860.1 DNA/RNA polymerases superfamily protein9.6e-0527.69Show/hide
Query:  LELILNRYIETNLVLNYEKCHFMVSHGIVLG--HLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLID
        L ++L  + +     N +KC F       LG  H++S + +  D  K++ M  +  P    ++R FL           N+ KI  PLT LL+K+      
Subjt:  LELILNRYIETNLVLNYEKCHFMVSHGIVLG--HLVSSKEIEVDKEKIDIMQKFSYPTCLKDVRSFL----------SNFSKIALPLTNLLQKDVPFLID

Query:  DNCKKAFDDLKQRLVSTPILQSLNWNLPFV
        +    AF  LK  + + P+L   +  LPFV
Subjt:  DNCKKAFDDLKQRLVSTPILQSLNWNLPFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAGGTACTAAAGCTAAAAGATGCCAGAATTATCTACCATGTCCTGGATAGTACATGGGTAAGTCCAATTCATGTGGTCCCAAAAAAGACTAGGATAACCATTGT
AAAGAACGAAAAAGGTGAGATGGTTCCGATGCGAATGCAAAATGGTTGGAGAATCTGCATCTATTACTGGAAACTCAATGAGGTAACAAAAAAGGATCATTTCCCCTTAC
ATTTTCTTGATCAAATGATAAAACGCTTAGCGGGTAGATCATATTTTTGTTTCTTAGATGAATTTTCTGGTTTTTATCAAATTCCTATAGCATGTGAAGACCAAAAGAAA
ACAACTTTTACTTGTGATTATGGAACTTATGCATTTAGGCGTATGCCATTTGGTCTTTTTAATGCACCGGGCACATTCCAACGTTGCATGATGAGCATATTTTTCGACTT
TATTGAAAAATGTATTGAAGTTTTCATGGATGATTTTACAGTTTATGGTAATAGTTTTGATGCATGTTTAGCTAGTCTAGAATTAATTCTAAATAGATACATAGAAACTA
ACCTTGTCTTGAATTATGAAAAGTGTCATTTCATGGTGTCTCATGGTATAGTTTTAGGACACTTAGTGTCTTCAAAAGAAATAGAGGTAGATAAAGAAAAAATTGACATT
ATGCAAAAATTTTCATATCCAACATGTTTAAAAGATGTTAGATCCTTCCTTAGCAATTTTTCCAAAATTGCTTTGCCTCTAACTAATCTCTTGCAAAAAGATGTACCATT
TCTGATTGATGACAATTGTAAGAAGGCATTTGATGATCTCAAACAAAGGTTGGTCTCTACCCCTATCCTTCAATCTCTTAATTGGAATTTACCTTTCGTAATAATGTGTG
ATGCAAGCAACTTAGCATTAGGAGCTATTTTAGGACAAAGGATAGATAAAAAATTGCATGTTATATACTATGCATCTAGGACCCTTAACCAAGCACAATCTAACTACACC
ACAACTGAAAAAGAATTTCTTGCTATCGTTTTTGCTTTAGATAAGTTTAAAAGCTACATTATTGGCTCCCCAGTAATTGTTTACACTGATCGTGCAGCAGTTAGGCTTGT
TCGATGGGTTTTACTTTTGCAAGAATTCAACCTAACCATCAAGGATAGAAAAGATGCCAACAATTCTGTAGCCGACCATCTTAGTCGAATTGTACAAAAGCAAGAAAGTA
TGCCAATTCGAGAAGACTTCCCTGATGAACATCTCTTTCAAACAAATCTTCAAGCACCATGGTACGCCGATATTGTAAACTACTTAGTCACGGATTCTTTTTCATTTTGT
AAATCATGTGCAAATTGTCAAAGAACCGGATCTCTATCTAGGAGAAATGAAATGCCCTTTCACCCCGTTATTATTTGTGAAGTTTTTGATATTTGGGGCATGGATTTTAT
GGGTCCCTTTCCTTCTTCTTTTGGATATCTTTACATTTTATTAGCCGTTGATTATGTATCAAAGTGGGTTGAAGCAATCTCCACTAGGACTAATGATTCTCCATTTGGCA
TCCCAAGGGCAATCATTAGCGATCAAGGAACACACTTTTGCAATCGGACCGTTGAAGCCTTGATGAGAAAATATGGTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAGGTACTAAAGCTAAAAGATGCCAGAATTATCTACCATGTCCTGGATAGTACATGGGTAAGTCCAATTCATGTGGTCCCAAAAAAGACTAGGATAACCATTGT
AAAGAACGAAAAAGGTGAGATGGTTCCGATGCGAATGCAAAATGGTTGGAGAATCTGCATCTATTACTGGAAACTCAATGAGGTAACAAAAAAGGATCATTTCCCCTTAC
ATTTTCTTGATCAAATGATAAAACGCTTAGCGGGTAGATCATATTTTTGTTTCTTAGATGAATTTTCTGGTTTTTATCAAATTCCTATAGCATGTGAAGACCAAAAGAAA
ACAACTTTTACTTGTGATTATGGAACTTATGCATTTAGGCGTATGCCATTTGGTCTTTTTAATGCACCGGGCACATTCCAACGTTGCATGATGAGCATATTTTTCGACTT
TATTGAAAAATGTATTGAAGTTTTCATGGATGATTTTACAGTTTATGGTAATAGTTTTGATGCATGTTTAGCTAGTCTAGAATTAATTCTAAATAGATACATAGAAACTA
ACCTTGTCTTGAATTATGAAAAGTGTCATTTCATGGTGTCTCATGGTATAGTTTTAGGACACTTAGTGTCTTCAAAAGAAATAGAGGTAGATAAAGAAAAAATTGACATT
ATGCAAAAATTTTCATATCCAACATGTTTAAAAGATGTTAGATCCTTCCTTAGCAATTTTTCCAAAATTGCTTTGCCTCTAACTAATCTCTTGCAAAAAGATGTACCATT
TCTGATTGATGACAATTGTAAGAAGGCATTTGATGATCTCAAACAAAGGTTGGTCTCTACCCCTATCCTTCAATCTCTTAATTGGAATTTACCTTTCGTAATAATGTGTG
ATGCAAGCAACTTAGCATTAGGAGCTATTTTAGGACAAAGGATAGATAAAAAATTGCATGTTATATACTATGCATCTAGGACCCTTAACCAAGCACAATCTAACTACACC
ACAACTGAAAAAGAATTTCTTGCTATCGTTTTTGCTTTAGATAAGTTTAAAAGCTACATTATTGGCTCCCCAGTAATTGTTTACACTGATCGTGCAGCAGTTAGGCTTGT
TCGATGGGTTTTACTTTTGCAAGAATTCAACCTAACCATCAAGGATAGAAAAGATGCCAACAATTCTGTAGCCGACCATCTTAGTCGAATTGTACAAAAGCAAGAAAGTA
TGCCAATTCGAGAAGACTTCCCTGATGAACATCTCTTTCAAACAAATCTTCAAGCACCATGGTACGCCGATATTGTAAACTACTTAGTCACGGATTCTTTTTCATTTTGT
AAATCATGTGCAAATTGTCAAAGAACCGGATCTCTATCTAGGAGAAATGAAATGCCCTTTCACCCCGTTATTATTTGTGAAGTTTTTGATATTTGGGGCATGGATTTTAT
GGGTCCCTTTCCTTCTTCTTTTGGATATCTTTACATTTTATTAGCCGTTGATTATGTATCAAAGTGGGTTGAAGCAATCTCCACTAGGACTAATGATTCTCCATTTGGCA
TCCCAAGGGCAATCATTAGCGATCAAGGAACACACTTTTGCAATCGGACCGTTGAAGCCTTGATGAGAAAATATGGTGTTTAA
Protein sequenceShow/hide protein sequence
MKEVLKLKDARIIYHVLDSTWVSPIHVVPKKTRITIVKNEKGEMVPMRMQNGWRICIYYWKLNEVTKKDHFPLHFLDQMIKRLAGRSYFCFLDEFSGFYQIPIACEDQKK
TTFTCDYGTYAFRRMPFGLFNAPGTFQRCMMSIFFDFIEKCIEVFMDDFTVYGNSFDACLASLELILNRYIETNLVLNYEKCHFMVSHGIVLGHLVSSKEIEVDKEKIDI
MQKFSYPTCLKDVRSFLSNFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSLNWNLPFVIMCDASNLALGAILGQRIDKKLHVIYYASRTLNQAQSNYT
TTEKEFLAIVFALDKFKSYIIGSPVIVYTDRAAVRLVRWVLLLQEFNLTIKDRKDANNSVADHLSRIVQKQESMPIREDFPDEHLFQTNLQAPWYADIVNYLVTDSFSFC
KSCANCQRTGSLSRRNEMPFHPVIICEVFDIWGMDFMGPFPSSFGYLYILLAVDYVSKWVEAISTRTNDSPFGIPRAIISDQGTHFCNRTVEALMRKYGV