CuGenDBv2

Gene ID	Pay0005335
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Photosystem II PsbX
Genome location	chr05:3675908..3676276
RNA-Seq Expression	Pay0005335
Synteny	Pay0005335
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0019904 - protein domain specific binding (molecular function)
InterPro domains	IPR009518 - Photosystem II PsbX

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0061475.1 membrane family protein [Cucumis melo var. makuwa]

1.6e-50

98.36

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Query:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSAISM MPITNAAQKR RRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
Subjt:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVTAILGAVIGVANFDPVKRT
        VVVTAILGAVIGVANFDPVKRT
Subjt:  VVVTAILGAVIGVANFDPVKRT

XP_008459641.1 PREDICTED: uncharacterized protein LOC103498700 [Cucumis melo]

4.9e-52

100

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Query:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
Subjt:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVTAILGAVIGVANFDPVKRT
        VVVTAILGAVIGVANFDPVKRT
Subjt:  VVVTAILGAVIGVANFDPVKRT

XP_011648590.1 uncharacterized protein LOC105434533 [Cucumis sativus]

1.3e-49

97.54

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Query:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSAISM MPITNAAQKR RRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGG
Subjt:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVTAILGAVIGVANFDPVKRT
        VVVTAILGAVIGVANFDPVKRT
Subjt:  VVVTAILGAVIGVANFDPVKRT

XP_022946746.1 uncharacterized protein LOC111450721 [Cucurbita moschata]

4.5e-45

88.52

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Query:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSA+SM MPITNA QKR R  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
Subjt:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVTAILGAVIGVANFDPVKRT
        VVVTAILGA+IGV+NFDPVKRT
Subjt:  VVVTAILGAVIGVANFDPVKRT

XP_038890010.1 uncharacterized protein LOC120079733 [Benincasa hispida]

2.5e-48

95.08

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Query:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSAISM MPITNAAQKR R AEAFAKPLPLRPSNKP+ SS+SSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
Subjt:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVTAILGAVIGVANFDPVKRT
        VVVTAILGAVIGVANFDPVKRT
Subjt:  VVVTAILGAVIGVANFDPVKRT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIL7 Uncharacterized protein

6.5e-50

97.54

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Query:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSAISM MPITNAAQKR RRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGG
Subjt:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVTAILGAVIGVANFDPVKRT
        VVVTAILGAVIGVANFDPVKRT
Subjt:  VVVTAILGAVIGVANFDPVKRT

A0A1S3CAS0 uncharacterized protein LOC103498700

2.4e-52

100

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Query:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
Subjt:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVTAILGAVIGVANFDPVKRT
        VVVTAILGAVIGVANFDPVKRT
Subjt:  VVVTAILGAVIGVANFDPVKRT

A0A5A7V6L0 Membrane family protein

7.7e-51

98.36

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Query:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSAISM MPITNAAQKR RRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
Subjt:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVTAILGAVIGVANFDPVKRT
        VVVTAILGAVIGVANFDPVKRT
Subjt:  VVVTAILGAVIGVANFDPVKRT

A0A6J1G4H3 uncharacterized protein LOC111450721

2.2e-45

88.52

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Query:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSA+SM MPITNA QKR R  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
Subjt:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVTAILGAVIGVANFDPVKRT
        VVVTAILGA+IGV+NFDPVKRT
Subjt:  VVVTAILGAVIGVANFDPVKRT

A0A6J1KCH8 uncharacterized protein LOC111493667

8.3e-45

87.7

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Query:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSA+SM MPITNA QKR R  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
Subjt:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVTAILGAVIGVANFDPVKRT
        VVV AILGA+IGV+NFDPVKRT
Subjt:  VVVTAILGAVIGVANFDPVKRT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G06520.1 photosystem II subunit X

1.5e-27

55.74

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Query:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSA+S+  P+         R+  F KPLPL+PS     +   + + QV+A   +KA+ G++A ALTASMV+PE+AEAAG G+SPSLKNFLLSIA+GG
Subjt:  MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVTAILGAVIGVANFDPVKRT
        +V+T I+G V+GV+NFDPVKRT
Subjt:  VVVTAILGAVIGVANFDPVKRT

Sequences

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CDS sequence

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ATGGCTTCAACTTCTGCTATTTCAATGCCGATGCCAATTACTAATGCGGCACAGAAGAGAACGAGGAGGGCCGAAGCCTTCGCCAAACCATTGCCTTTGAGGCCT
TCCAACAAGCCAAGTGGCTCCTCAAGCTCCAGCGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCTGTTGCTGGACTGGCTGCAACGGCACTCACAGCT
TCCATGGTCCTTCCTGAGGTGGCTGAAGCTGCTGGCCCTGGCGTTAGTCCCTCTCTCAAGAATTTCTTGCTCAGCATTGCAGCTGGTGGAGTAGTCGTCACTGCT
ATCTTAGGTGCAGTTATCGGCGTCGCCAATTTCGATCCCGTCAAGCGGACCTGA

mRNA sequence

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Protein sequence

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MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTA
ILGAVIGVANFDPVKRT

Pay0005335 (gene) of Melon (Payzawat) v1 genome