CuGenDBv2

Gene ID	Pay0005703
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Gag/pol protein
Genome location	chr05:24721156..24721599
RNA-Seq Expression	Pay0005703
Synteny	Pay0005703
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-77

100

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Query:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
        DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
Subjt:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
        EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
Subjt:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]

5.9e-76

98.64

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Query:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
        DSRKSTS SVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWL+KFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
Subjt:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
        EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
Subjt:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-77

100

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Query:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
        DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
Subjt:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
        EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
Subjt:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

3.1e-77

100

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Query:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
        DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
Subjt:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
        EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
Subjt:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR

KAA0061170.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-75

98.64

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Query:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
        DSRKSTSGSVFTLN GAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
Subjt:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
        EIVQRGDVIVTKIASEHNIADPFTK LTAKVFEGHLESLGLRDMYIR
Subjt:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2V9 Gag/pol protein

2.9e-76

98.64

Show/hide

Query:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
        DSRKSTS SVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWL+KFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
Subjt:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
        EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
Subjt:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR

A0A5A7TKM4 Gag/pol protein

1.5e-77

100

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Query:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
        DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
Subjt:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
        EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
Subjt:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR

A0A5A7TZD0 Gag/pol protein

1.5e-77

100

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Query:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
        DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
Subjt:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
        EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
Subjt:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR

A0A5A7UYE8 Gag/pol protein

1.5e-77

100

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Query:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
        DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
Subjt:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
        EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
Subjt:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR

A0A5A7V1F5 Gag/pol protein

6.4e-76

98.64

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Query:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
        DSRKSTSGSVFTLN GAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
Subjt:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR
        EIVQRGDVIVTKIASEHNIADPFTK LTAKVFEGHLESLGLRDMYIR
Subjt:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.3e-20

39.29

Show/hide

Query:  RKSTSGSVFTL-NGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE
        RKST+G +F + +   + W + +Q  +A S+ EAEY+A  EA +EA+WL+  L  + +   +  PI +Y DN G ++ +  P  HKR KHI+ KYH  RE
Subjt:  RKSTSGSVFTL-NGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE

Query:  IVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGL
         VQ   + +  I +E+ +AD FTK L A  F    + LGL
Subjt:  IVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGL

P0CV72 Secreted RxLR effector protein 161

1.9e-08

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Query:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWL
        +SR+STSG +F LNGG V WRS KQ  +A S+ E EY+A  EA +EAVWL
Subjt:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-24

42.55

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Query:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
        D+RKS++G +FT +GGA+ W+S  Q C+A ST EAEY+AA E  KE +WL++FL +L +         +YCD+  A+  SK    H R KHI+ +YH IR
Subjt:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR

Query:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGL
        E+V    + V KI++  N AD  TK +    FE   E +G+
Subjt:  EIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGL

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

7.6e-13

36.63

Show/hide

Query:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR
        D+R+ST+G    L    + W+S KQ  ++ S+ EAEY A   A  E +WL +F  +L++   ++ P  L+CDN+ A+  +     H+R KHIE   H +R
Subjt:  DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIR

Query:  E
        E
Subjt:  E

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

GATTCTAGGAAATCCACATCGGGATCAGTGTTCACCCTAAATGGGGGAGCTGTAGTATGGCGTAGCATCAAGCAAGGATGCATTGCAGACTCTACAATGGAGGCTGAATA
CGTCGCTGCTTGTGAAGCAGCAAAAGAAGCAGTTTGGCTTAGGAAGTTCCTACATGATTTGGAAGTTGTTCCAAATATGAACTTGCCCATCACTCTATATTGTGATAACA
GTGGGGCAGTAGCCAATTCTAAAGAACCTCGCAGCCATAAACGAGGGAAACACATAGAGAGGAAGTATCATCTGATACGGGAGATTGTGCAACGAGGGGATGTGATCGTC
ACCAAGATCGCTTCGGAGCACAACATTGCTGATCCATTTACGAAGACTCTCACGGCTAAAGTGTTCGAGGGTCATCTAGAAAGTCTAGGTCTACGAGATATGTACATTAG
GTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

DSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIV
TKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR

Pay0005703 (gene) of Melon (Payzawat) v1 genome