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Pay0005860 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0005860
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReverse transcriptase
Genome locationchr04:6781587..6782075
RNA-Seq ExpressionPay0005860
SyntenyPay0005860
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008194 - UDP-glycosyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040547.1 pol protein [Cucumis melo var. makuwa]8.2e-5972.84Show/hide
Query:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP
        MLTAQ+RQKSYADV RKDLEF+VGDMVFLKVAPM G                      RIGPVAYRLALPPS + VHDVFH+SMLRKYV DPTHVVDFEP
Subjt:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP

Query:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN
        LQ+S NLSYEEQP+E+LAREVK+L +R I+LVKVLW+NHGVEEATWE+EEDMRAQYPELF++
Subjt:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN

KAA0056807.1 pol protein [Cucumis melo var. makuwa]3.7e-5975.31Show/hide
Query:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP
        MLTAQ+RQKSY DV RKDLEFDVGDMVFLKVAPM G                      RIGPVAYRLALPPS S VHDVFHVSMLR+YVVDPTHVVDFEP
Subjt:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP

Query:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN
        LQ++  LSYEEQP+EILAR+VK L NRGIALVKVLWRNHGVEEATWEREEDMRAQY ELF++
Subjt:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN

KAA0063370.1 pol protein [Cucumis melo var. makuwa]1.6e-5974.69Show/hide
Query:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP
        MLTAQ+RQKSYADV RKDLEF+VGDMVFLKVAPM G                      RIGPVAYRLALPPS STVHDVFHVSMLR+YV DPTHVVDFEP
Subjt:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP

Query:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN
        LQ+S NLSYEEQP+E+LAREVK+L +R I+LVKVLWRNHGVEEATWEREEDMRA YPELF++
Subjt:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN

KAA0067940.1 pol protein [Cucumis melo var. makuwa]1.1e-5874.07Show/hide
Query:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP
        MLTAQ+RQKSYADV RKDLEF+VGDMVFLKVAPM G                      RIGPVAYRLALPPS STVHDVFHVSMLR+YV DPTHVVDFEP
Subjt:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP

Query:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN
        LQ+S NLSYEEQP+EILAREVK+L NR I+L KVLWRN GVEEATWEREEDMR QYP+LF++
Subjt:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN

TYK04678.1 pol protein [Cucumis melo var. makuwa]4.8e-5973.46Show/hide
Query:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP
        MLTAQ+RQKSYAD+ RKDLEF+VGDMVFLKVAPM G                      RIGPVAYRLALPPS   VHDVFHVSM+R+YV DPTHVVDFEP
Subjt:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP

Query:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN
        LQ+S NLSYEEQP+EILAREVK+L +R I+LVKV+WRNHGVEEATWEREEDMRAQYPELFK+
Subjt:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN

TrEMBL top hitse value%identityAlignment
A0A5A7TG62 Reverse transcriptase4.0e-5972.84Show/hide
Query:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP
        MLTAQ+RQKSYADV RKDLEF+VGDMVFLKVAPM G                      RIGPVAYRLALPPS + VHDVFH+SMLRKYV DPTHVVDFEP
Subjt:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP

Query:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN
        LQ+S NLSYEEQP+E+LAREVK+L +R I+LVKVLW+NHGVEEATWE+EEDMRAQYPELF++
Subjt:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN

A0A5A7V809 Reverse transcriptase8.0e-6074.69Show/hide
Query:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP
        MLTAQ+RQKSYADV RKDLEF+VGDMVFLKVAPM G                      RIGPVAYRLALPPS STVHDVFHVSMLR+YV DPTHVVDFEP
Subjt:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP

Query:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN
        LQ+S NLSYEEQP+E+LAREVK+L +R I+LVKVLWRNHGVEEATWEREEDMRA YPELF++
Subjt:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN

A0A5A7VL51 Reverse transcriptase5.2e-5974.07Show/hide
Query:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP
        MLTAQ+RQKSYADV RKDLEF+VGDMVFLKVAPM G                      RIGPVAYRLALPPS STVHDVFHVSMLR+YV DPTHVVDFEP
Subjt:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP

Query:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN
        LQ+S NLSYEEQP+EILAREVK+L NR I+L KVLWRN GVEEATWEREEDMR QYP+LF++
Subjt:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN

A0A5D3BLR3 Pol protein1.8e-5975.31Show/hide
Query:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP
        MLTAQ+RQKSY DV RKDLEFDVGDMVFLKVAPM G                      RIGPVAYRLALPPS S VHDVFHVSMLR+YVVDPTHVVDFEP
Subjt:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP

Query:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN
        LQ++  LSYEEQP+EILAR+VK L NRGIALVKVLWRNHGVEEATWEREEDMRAQY ELF++
Subjt:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN

A0A5D3C081 Pol protein2.3e-5973.46Show/hide
Query:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP
        MLTAQ+RQKSYAD+ RKDLEF+VGDMVFLKVAPM G                      RIGPVAYRLALPPS   VHDVFHVSM+R+YV DPTHVVDFEP
Subjt:  MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNG----------------------RIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEP

Query:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN
        LQ+S NLSYEEQP+EILAREVK+L +R I+LVKV+WRNHGVEEATWEREEDMRAQYPELFK+
Subjt:  LQLSGNLSYEEQPLEILAREVKRLSNRGIALVKVLWRNHGVEEATWEREEDMRAQYPELFKN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGACAGCACAGAACAGACAGAAGAGTTATGCTGATGTCCATCGTAAGGATCTCGAGTTTGATGTGGGAGACATGGTTTTTCTAAAGGTAGCACCGATGAATGGTCG
GATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCCCCATCTCTTTCTACAGTGCATGACGTATTCCATGTCTCCATGCTGAGGAAGTATGTCGTAGATCCGACGCATGTAG
TGGACTTCGAGCCATTGCAACTTAGTGGGAACTTGAGCTACGAAGAGCAACCTCTTGAGATTTTGGCAAGGGAGGTCAAGAGGCTCAGTAATCGAGGAATTGCACTGGTC
AAGGTTCTTTGGCGAAACCACGGAGTTGAAGAGGCCACGTGGGAGAGAGAAGAGGACATGAGAGCCCAGTACCCCGAGCTGTTCAAGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGACAGCACAGAACAGACAGAAGAGTTATGCTGATGTCCATCGTAAGGATCTCGAGTTTGATGTGGGAGACATGGTTTTTCTAAAGGTAGCACCGATGAATGGTCG
GATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCCCCATCTCTTTCTACAGTGCATGACGTATTCCATGTCTCCATGCTGAGGAAGTATGTCGTAGATCCGACGCATGTAG
TGGACTTCGAGCCATTGCAACTTAGTGGGAACTTGAGCTACGAAGAGCAACCTCTTGAGATTTTGGCAAGGGAGGTCAAGAGGCTCAGTAATCGAGGAATTGCACTGGTC
AAGGTTCTTTGGCGAAACCACGGAGTTGAAGAGGCCACGTGGGAGAGAGAAGAGGACATGAGAGCCCAGTACCCCGAGCTGTTCAAGAATTAG
Protein sequenceShow/hide protein sequence
MLTAQNRQKSYADVHRKDLEFDVGDMVFLKVAPMNGRIGPVAYRLALPPSLSTVHDVFHVSMLRKYVVDPTHVVDFEPLQLSGNLSYEEQPLEILAREVKRLSNRGIALV
KVLWRNHGVEEATWEREEDMRAQYPELFKN