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Pay0005933 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0005933
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionArabinogalactan protein 20
Genome locationchr06:787661..788391
RNA-Seq ExpressionPay0005933
SyntenyPay0005933
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK17643.1 Arabinogalactan protein 20 [Cucumis melo var. makuwa]3.9e-24100Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLT
        MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLT
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLT

XP_004133836.1 arabinogalactan protein 41 [Cucumis sativus]3.3e-2383.54Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF
        M S N T+RAFKALFT FSLIFFILSPLVDA    PAPAPAPSSDGTSIDQGIAYVLML+ALVLTYLIHPLDAS   FF
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF

XP_022924337.1 arabinogalactan peptide 16-like [Cucurbita moschata]1.5e-2380.25Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF
        MASSN T+RAF  LFT F+LI FILSPLVDA  + PAPAPAPAP+SDGTSIDQG+AYVLMLVALVLTYLIHPLDAS   FF
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF

XP_023528757.1 arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo]1.9e-2379.75Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF
        MASSN T+RAF  LFT F+LI FILSPLVDA +  PAPAPAP+SDGTSIDQG+AYVLMLVALVLTYLIHPLDAS   FF
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF

XP_038905636.1 arabinogalactan protein 41-like [Benincasa hispida]5.6e-2382.28Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF
        M SSN T+RAF  LFT F+LIFFILSPLVDA   APAPAPAP+SDGTSIDQGIAYVLMLVALVLTYLIHPLDAS   FF
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF

TrEMBL top hitse value%identityAlignment
A0A0A0L7A0 Uncharacterized protein1.6e-2383.54Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF
        M S N T+RAFKALFT FSLIFFILSPLVDA    PAPAPAPSSDGTSIDQGIAYVLML+ALVLTYLIHPLDAS   FF
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF

A0A5D3D0D1 Arabinogalactan protein 201.9e-24100Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLT
        MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLT
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLT

A0A6J1D1D7 arabinogalactan peptide 20-like2.7e-2379.75Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF
        MASS  T+RAF +LFT F+LIFFI+SPLVDA + APAPAPAP+SDGTSIDQGIAYVLML+ALVLTYLIHPLDAS   FF
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF

A0A6J1E8M6 arabinogalactan peptide 16-like7.1e-2480.25Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF
        MASSN T+RAF  LFT F+LI FILSPLVDA  + PAPAPAPAP+SDGTSIDQG+AYVLMLVALVLTYLIHPLDAS   FF
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF

A0A6J1IQM6 arabinogalactan peptide 20-like7.9e-2377.78Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF
        MASSN T RAF  LFT F+LI FILSPL+DA  + P+PAPAPAP+SDGTSIDQG+AYVLMLVALVLTYLIHPLDAS   FF
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFF

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 162.2e-1463.51Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDAS
        MAS N  T      F +FS +F ++  L  A A + APAPAP+SDGTSIDQGIAY+LM+VALVLTYLIHPLDAS
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDAS

Q8L9T8 Arabinogalactan protein 412.1e-1269.35Show/hide
Query:  TRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH
        +R F  + TI S+IF IL P+  A A + APAPAP+SDGT+IDQGIAYVLMLVALVLTYLIH
Subjt:  TRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH

Q9FK16 Arabinogalactan protein 226.2e-0960.71Show/hide
Query:  LFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH
        +  +F +I  IL P+  A + + +PAPAP+SDGTSIDQGIAYVLM+VAL LTY IH
Subjt:  LFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH

Q9M373 Arabinogalactan protein 203.8e-1460.81Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDAS
        MAS N       A+  +F+ +F ++SP   A A + APAP+P+SDGTSIDQGIAY+LM+VALVLTYLIHPLDAS
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDAS

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 161.6e-1563.51Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDAS
        MAS N  T      F +FS +F ++  L  A A + APAPAP+SDGTSIDQGIAY+LM+VALVLTYLIHPLDAS
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDAS

AT3G61640.1 arabinogalactan protein 202.7e-1560.81Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDAS
        MAS N       A+  +F+ +F ++SP   A A + APAP+P+SDGTSIDQGIAY+LM+VALVLTYLIHPLDAS
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDAS

AT5G24105.1 arabinogalactan protein 411.5e-1369.35Show/hide
Query:  TRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH
        +R F  + TI S+IF IL P+  A A + APAPAP+SDGT+IDQGIAYVLMLVALVLTYLIH
Subjt:  TRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH

AT5G53250.1 arabinogalactan protein 224.4e-1060.71Show/hide
Query:  LFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH
        +  +F +I  IL P+  A + + +PAPAP+SDGTSIDQGIAYVLM+VAL LTY IH
Subjt:  LFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCTTCCAATCCTACTACTAGGGCTTTCAAAGCTCTCTTCACCATCTTCTCTCTCATCTTCTTCATTCTTTCTCCACTCGTTGACGCCGCAGCACCTGCT
CCCGCTCCCGCTCCCGCTCCTTCTAGCGACGGGACCTCCATTGATCAGGGGATTGCGTACGTTTTGATGCTAGTGGCGTTGGTTCTCACGTATCTAATTCACCCT
CTCGATGCATCTTTCTTACAATTTTTTTCTGAATTGAATTGA
mRNA sequenceShow/hide mRNA sequence
CTCAATTCTCTCTCTATTTGTAATATATAAAAAACGGGAATCGCCACATTATCCTCCGCCCCACTACTCTCCTCTCCTTCTTCAAACCATTTGGATTTTGATCAG
TGCTTCCACACAAATTCCCCTCCTTTTGGAGAAGGAGAATTCGACCATCCATCAATGGCGTCTTCCAATCCTACTACTAGGGCTTTCAAAGCTCTCTTCACCATC
TTCTCTCTCATCTTCTTCATTCTTTCTCCACTCGTTGACGCCGCAGCACCTGCTCCCGCTCCCGCTCCCGCTCCTTCTAGCGACGGGACCTCCATTGATCAGGGG
ATTGCGTACGTTTTGATGCTAGTGGCGTTGGTTCTCACGTATCTAATTCACCCTCTCGATGCATCTTTCTTACAATTTTTTTCTGAATTGAATTGAATTCTTCTT
CCTAGGATTGTAGCAATGTAGGCGTTGTTTGTGGACGTTTGAGAAGGAACGAGACCCATTTTTTCTTCTCTCTTTTTGTGATAAAATCAAAAGTGTATATTTGGG
TTCCACAGATTTTGATCAATTGCTCCATTTAATTCATTGTTTATTCGGTT
Protein sequenceShow/hide protein sequence
MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFSELN